FFCP PHASE1:Hg19::chr17:61959284..61959322,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2689 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4262 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000332800_5end | |||
|cluster_id=chr17:61959284..61959322,- | |||
|coexpression_cluster_id=C34 | |||
|description=CAGE_peak_1_at_GH2_5end | |||
|id=chr17:61959284..61959322,- | |||
|ontology_enrichment_celltype=CL:0000039!1.56e-76!7;CL:0000586!1.56e-76!7;CL:0002322!2.60e-54!5;CL:0000148!1.78e-10!10;CL:0000541!1.78e-10!10;CL:0000147!1.25e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.34e-77;7!CL:0000586;1.34e-77;7!CL:0000083;9.11e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.34e-77,7;CL:0000586,1.34e-77,7;CL:0000083,9.11e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0003124;1.07e-23;1!UBERON:0009117;2.33e-20;10!UBERON:0005564;2.33e-20;10 | |||
|ontology_enrichment_disease=DOID:3095!4.72e-24!22;DOID:2994!4.72e-24!22;DOID:1799!1.40e-12!1;DOID:10165!1.40e-12!1;DOID:1798!1.40e-12!1 | |||
|ontology_enrichment_disease_v019=DOID:3095;5.32e-25;22!DOID:2994;5.32e-25;22!DOID:1799;4.10e-23;1!DOID:10165;4.10e-23;1!DOID:1798;4.10e-23;1!DOID:1793;9.11e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,5.32e-25,22;DOID:2994,5.32e-25,22;DOID:1799,4.10e-23,1;DOID:10165,4.10e-23,1;DOID:1798,4.10e-23,1;DOID:1793,9.11e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.55e-22!8;UBERON:0003135!1.77e-16!11;UBERON:0000991!9.69e-09!21;UBERON:0009196!9.69e-09!21;UBERON:0009117!9.69e-09!21;UBERON:0005564!9.69e-09!21;UBERON:0004176!2.37e-08!22;UBERON:0003101!2.37e-08!22;UBERON:0000079!2.37e-08!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;3.04e-25;8!UBERON:0003135;1.40e-18;11!UBERON:0000991;4.58e-10;21!UBERON:0003101;1.23e-09;22!UBERON:0000079;1.23e-09;22!UBERON:0002323;1.05e-07;45!UBERON:0001987;6.50e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.04e-25,8;UBERON:0003135,1.40e-18,11;UBERON:0000991,4.58e-10,21;UBERON:0009196,4.58e-10,21;UBERON:0009117,4.58e-10,21;UBERON:0005564,4.58e-10,21;UBERON:0004176,1.23e-09,22;UBERON:0003101,1.23e-09,22;UBERON:0000079,1.23e-09,22;UBERON:0002323,5.18e-08,46;UBERON:0003133,9.72e-08,48;UBERON:0004458,1.53e-07,49;UBERON:0001987,6.50e-07,4;UBERON:0004340,6.50e-07,4;UBERON:0003886,7.16e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.975789649036763,0.132529768321485,0.580969714347592,0.621966330092223,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,125.400911175278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,113.066704732912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1528195219403,25.221898079146,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.14288033377707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,390.911345306749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509944148709909,5.61156551057677,5.97316846976492,2.75778293221613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@GH2 | |||
}} |
Latest revision as of 18:32, 16 September 2015
Short description: | p1@GH2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GH2_5end |
Coexpression cluster: | C34_placenta_chorionic_choriocarcinoma_mesothelioma_Wilms_Smooth_bile |
Association with transcript: | 0bp_to_ENST00000332800_5end |
EntrezGene: | GH2 |
HGNC: | 4262 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.34e-77 | 7 |
germ cell | 1.34e-77 | 7 |
epithelial cell of pancreas | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
testis | 3.04e-25 | 8 |
male reproductive organ | 1.40e-18 | 11 |
gonad | 4.58e-10 | 21 |
indifferent external genitalia | 4.58e-10 | 21 |
indifferent gonad | 4.58e-10 | 21 |
gonad primordium | 4.58e-10 | 21 |
external genitalia | 1.23e-09 | 22 |
male organism | 1.23e-09 | 22 |
male reproductive system | 1.23e-09 | 22 |
body cavity | 5.18e-08 | 46 |
reproductive organ | 9.72e-08 | 48 |
body cavity or lining | 1.53e-07 | 49 |
placenta | 6.50e-07 | 4 |
allantois | 6.50e-07 | 4 |
body cavity precursor | 7.16e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.32e-25 | 22 |
germ cell cancer | 5.32e-25 | 22 |
islet cell tumor | 4.10e-23 | 1 |
endocrine pancreas cancer | 4.10e-23 | 1 |
pancreatic endocrine carcinoma | 4.10e-23 | 1 |
pancreatic cancer | 9.11e-07 | 4 |