FFCP PHASE1:Hg19::chr17:8301132..8301150,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=643904 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=34517 | |||
|TSSclassifier=strong | |||
|UniProt=A6NCQ9 | |||
|association_with_transcript=0bp_to_ENST00000399398,NM_001146684,uc010vuy.1_5end | |||
|cluster_id=chr17:8301132..8301150,- | |||
|coexpression_cluster_id=C629 | |||
|description=CAGE_peak_1_at_RNF222_5end | |||
|id=chr17:8301132..8301150,- | |||
|ontology_enrichment_celltype=CL:0001014!1.17e-09!2;CL:0000575!1.17e-09!2;CL:0001016!1.17e-09!2;CL:0002537!8.33e-09!5;CL:0000453!4.10e-08!5;CL:0002328!8.69e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002537;4.02e-28;5!CL:0000575;7.49e-09;2!CL:0000349;7.28e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002537,4.41e-28,5;CL:0000575,6.94e-09,2;CL:0000349,7.45e-08,19 | |||
|ontology_enrichment_development_v019=UBERON:0009143;5.53e-17;1!UBERON:0008814;3.71e-09;2!UBERON:0010056;3.71e-09;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000166!1.62e-09!21;UBERON:0005631!1.55e-07!14;UBERON:0000158!1.55e-07!14;UBERON:0001723!3.97e-07!3;UBERON:0001033!3.97e-07!3;UBERON:0010056!3.97e-07!3;UBERON:0000165!6.96e-07!28;UBERON:0000930!6.96e-07!28;UBERON:0004815!8.69e-07!3;UBERON:0002031!8.69e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001723;1.43e-21;3!UBERON:0001033;1.43e-21;3!UBERON:0000305;2.64e-20;7!UBERON:0002372;8.85e-17;1!UBERON:0001961;8.85e-17;1!UBERON:0001744;8.85e-17;1!UBERON:0001042;8.85e-17;1!UBERON:0001735;8.85e-17;1!UBERON:0005795;2.25e-16;1!UBERON:0007029;2.25e-16;1!UBERON:0005631;2.03e-14;10!UBERON:0000158;2.03e-14;10!UBERON:0000165;4.11e-09;28!UBERON:0000341;4.34e-09;2!UBERON:0006562;4.70e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001723,1.17e-21,3;UBERON:0001033,1.17e-21,3;UBERON:0010056,1.17e-21,3;UBERON:0000305,2.82e-20,7;UBERON:0004871,7.88e-18,8;UBERON:0002372,8.86e-17,1;UBERON:0001961,8.86e-17,1;UBERON:0001744,8.86e-17,1;UBERON:0001735,8.86e-17,1;UBERON:0007029,1.65e-16,1;UBERON:0001042,1.41e-14,10;UBERON:0009145,1.41e-14,10;UBERON:0006562,2.60e-13,11;UBERON:0000166,1.55e-11,22;UBERON:0005631,1.84e-10,14;UBERON:0000158,1.84e-10,14;UBERON:0000341,4.34e-09,2;UBERON:0000165,8.14e-09,29;UBERON:0000930,8.14e-09,29;UBERON:0000153,1.06e-08,62;UBERON:0007811,1.06e-08,62;UBERON:0001557,6.02e-08,19;UBERON:0001444,7.46e-08,49;UBERON:0000161,3.82e-07,36;UBERON:0000033,7.28e-07,56 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.6024118375565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451199612907412,0.770153371044148,0,0,0,0,0,0,0,0,0,1.01950509218015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3874448473769,1.78178808499583,5.22173193568695,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0.615602068030377,0,0,0.0897576444097721,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.33439590686307,0,0.225980740780532,0,0,0,0.391102765469606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0.449947783103001,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0.559518030877778,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07377898544228,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,1.94284397223656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.26467963801962,0,0,0,0,0,0,5.660635445321,2.39563310759697,3.63701086278773,0.430333232356058,0,0,0,0,0,0,0.244482888365733,1.22068853494722,0,0,0 | |||
|short_description=p1@RNF222 | |||
}} |
Latest revision as of 15:32, 18 September 2015
Short description: | p1@RNF222 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RNF222_5end |
Coexpression cluster: | C629_esophagus_amniotic_tongue_throat_tonsil_uterus_salivary |
Association with transcript: | 0bp_to_ENST00000399398, NM_001146684, uc010vuy.1_5end |
EntrezGene: | RNF222 |
HGNC: | 34517 |
UniProt: | A6NCQ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amnion mesenchymal stem cell | 4.41e-28 | 5 |
corneal epithelial cell | 6.94e-09 | 2 |
extraembryonic cell | 7.45e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
tongue | 1.17e-21 | 3 |
gustatory system | 1.17e-21 | 3 |
future tongue | 1.17e-21 | 3 |
amnion | 2.82e-20 | 7 |
somatic layer of lateral plate mesoderm | 7.88e-18 | 8 |
tonsil | 8.86e-17 | 1 |
mucosa-associated lymphoid tissue | 8.86e-17 | 1 |
lymphoid tissue | 8.86e-17 | 1 |
tonsillar ring | 8.86e-17 | 1 |
surface | 1.65e-16 | 1 |
chordate pharynx | 1.41e-14 | 10 |
pharyngeal region of foregut | 1.41e-14 | 10 |
pharynx | 2.60e-13 | 11 |
oral opening | 1.55e-11 | 22 |
extraembryonic membrane | 1.84e-10 | 14 |
membranous layer | 1.84e-10 | 14 |
throat | 4.34e-09 | 2 |
mouth | 8.14e-09 | 29 |
stomodeum | 8.14e-09 | 29 |
anterior region of body | 1.06e-08 | 62 |
craniocervical region | 1.06e-08 | 62 |
upper respiratory tract | 6.02e-08 | 19 |
subdivision of head | 7.46e-08 | 49 |
orifice | 3.82e-07 | 36 |
head | 7.28e-07 | 56 |