FFCP PHASE1:Hg19::chr19:50979981..50980050,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=112703 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25107 | |||
|TSSclassifier=strong | |||
|UniProt=Q6IPT2 | |||
|association_with_transcript=0bp_to_ENST00000270620,ENST00000391816,NM_138411,uc002psg.2,uc002psh.2,uc002psi.2_5end | |||
|cluster_id=chr19:50979981..50980050,- | |||
|description=CAGE_peak_2_at_FAM71E1_5end | |||
|id=chr19:50979981..50980050,- | |||
|ontology_enrichment_celltype=CL:0000066!2.00e-29!254;CL:0002076!4.03e-08!43;CL:0000082!1.83e-07!19;CL:0000076!6.05e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0000082;5.49e-10;19!CL:0002368;4.32e-09;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.12e-32,253;CL:0000082,7.66e-10,19;CL:0002076,3.83e-09,42;CL:0002368,6.05e-09,13;CL:0000076,1.01e-07,63 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.13e-07;29 | |||
|ontology_enrichment_disease=DOID:305!1.43e-15!106;DOID:0050687!1.72e-13!143 | |||
|ontology_enrichment_disease_v019=DOID:0050615;1.89e-08;16!DOID:1324;9.72e-08;15!DOID:1749;6.91e-07;14!DOID:305;7.88e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.05e-19,106;DOID:0050687,1.06e-15,143;DOID:162,6.13e-08,235;DOID:0050615,6.14e-08,16;DOID:14566,2.53e-07,239;DOID:1324,2.77e-07,15;DOID:1749,6.08e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000064!1.15e-14!219;UBERON:0000481!3.46e-13!347;UBERON:0000119!4.16e-12!312;UBERON:0000483!5.59e-12!309;UBERON:0000922!6.91e-12!612;UBERON:0000468!5.08e-11!659;UBERON:0002050!3.98e-10!605;UBERON:0005423!3.98e-10!605;UBERON:0000475!7.06e-10!365;UBERON:0000923!8.00e-10!604;UBERON:0005291!8.00e-10!604;UBERON:0006598!8.00e-10!604;UBERON:0002532!8.00e-10!604;UBERON:0003056!8.84e-10!61;UBERON:0004111!1.86e-09!241;UBERON:0000924!2.77e-09!173;UBERON:0006601!2.77e-09!173;UBERON:0000063!6.13e-09!97;UBERON:0002346!1.22e-08!90;UBERON:0004121!1.32e-08!169;UBERON:0000477!1.57e-08!286;UBERON:0000025!1.91e-08!194;UBERON:0000153!2.18e-08!129;UBERON:0007811!2.18e-08!129;UBERON:0000033!2.21e-08!123;UBERON:0000065!2.66e-08!53;UBERON:0001004!3.81e-08!72;UBERON:0003075!6.89e-08!86;UBERON:0007284!6.89e-08!86;UBERON:0008947!7.96e-08!38;UBERON:0003258!7.96e-08!38;UBERON:0005153!8.62e-08!37;UBERON:0000480!1.06e-07!626;UBERON:0000467!1.25e-07!625;UBERON:0004802!1.83e-07!19;UBERON:0000115!1.83e-07!19;UBERON:0001869!1.95e-07!32;UBERON:0002048!1.96e-07!22;UBERON:0000117!1.96e-07!22;UBERON:0000171!1.96e-07!22;UBERON:0000170!1.96e-07!22;UBERON:0005597!1.96e-07!22;UBERON:0000118!1.96e-07!22;UBERON:0002780!2.04e-07!41;UBERON:0001890!2.04e-07!41;UBERON:0006240!2.04e-07!41;UBERON:0000062!2.36e-07!511;UBERON:0005157!3.17e-07!51;UBERON:0001893!4.26e-07!34;UBERON:0005743!5.27e-07!86;UBERON:0002020!5.53e-07!34;UBERON:0003528!5.53e-07!34;UBERON:0002791!5.72e-07!33;UBERON:0003080!6.97e-07!42;UBERON:0009569!7.22e-07!113;UBERON:0000915!9.27e-07!52;UBERON:0000072!9.45e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0004802;5.49e-10;19!UBERON:0000115;5.49e-10;19!UBERON:0002048;6.16e-09;22!UBERON:0000117;6.16e-09;22!UBERON:0000171;6.16e-09;22!UBERON:0000170;6.16e-09;22!UBERON:0005181;3.55e-08;35!UBERON:0000072;5.29e-08;37!UBERON:0000065;5.38e-08;44!UBERON:0004807;6.59e-08;22!UBERON:0005178;7.04e-08;34!UBERON:0002224;7.04e-08;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004802,7.66e-10,19;UBERON:0000115,7.66e-10,19;UBERON:0008947,1.29e-09,38;UBERON:0003258,1.29e-09,38;UBERON:0000065,1.90e-09,54;UBERON:0005181,6.98e-09,35;UBERON:0002048,9.23e-09,22;UBERON:0000117,9.23e-09,22;UBERON:0000171,9.23e-09,22;UBERON:0000170,9.23e-09,22;UBERON:0005597,9.23e-09,22;UBERON:0000118,9.23e-09,22;UBERON:0005153,1.12e-08,37;UBERON:0005178,2.01e-08,34;UBERON:0002224,2.01e-08,34;UBERON:0000072,6.12e-08,47;UBERON:0005157,7.22e-08,47;UBERON:0001048,9.11e-08,160;UBERON:0001004,9.71e-08,74;UBERON:0004119,1.33e-07,160;UBERON:0000925,1.33e-07,160;UBERON:0006595,1.33e-07,160;UBERON:0005177,1.55e-07,101;UBERON:0000922,1.82e-07,592;UBERON:0011216,5.87e-07,223;UBERON:0009569,6.20e-07,112;UBERON:0001041,9.87e-07,87 | |||
|phase1_expression=0.54503513781167,0.214100523890983,0.563817616383885,1.0007329835313,0.893922188854576,0,0,0,0.261185628199839,2.21160542851358,2.09340350391728,3.27662058195258,2.90143676051299,0.37129905888014,0,0,0.602694528023977,0.730310090387373,0.487932798790507,0.61560529038394,0.204000691244253,1.88072832886853,0.286235987131057,0.273748850145768,0.502170558379211,0.229240217243854,0.164201178899891,0.0787107813136792,0,0,0.154816123316076,1.83884244895785,1.8072355126695,2.58827807116751,0.309868802321207,0,0.293600439334847,0,0,0.434021741431704,0,0,0,0.145398238779565,0,0.242584061187816,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0.449446968890169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,1.32171328579026,0,0,0.393419540227666,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0.221533894583621,0,0,0,0,0.276350017785848,0,0.14828656316206,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289648807765598,0,0.670700859703636,1.53435074212236,0,0,0.579386075843295,0,0,1.03988298880475,0.886917589850256,0.527008714158756,1.44076983047484,3.64295288292542,1.11235332835329,0,0.348259474598534,0.132957960518865,0,0.571994910780128,0.371457501329565,0.39752481473341,0,0.347140501607594,0,0.419499436209906,0,0,0,0.35576626268671,1.00416183829401,0.805658634218294,0.760272105718513,2.68468263302986,0.367663080345869,0.81014194788176,0.17859945656816,0,0.337834441449967,1.53316637465883,0.949265659568129,0.183201743930407,0,0,2.61656431285521,0,0.506522046658319,0.264818361626438,1.14734648299525,0.354668382198357,1.12135520028461,1.06748995729705,0.98667019366864,0.622422070799533,0.67355336034844,0.326923806226917,0.302714855289863,0.576175924479999,0.234321431833797,0.624320153660641,0,0,0.117434498643765,0,0,0,0.368502951935304,0.206651562351531,1.18800285728205,0.247266929278557,0,0.718618141816238,0,0.125118519871964,0,0.438977620880838,0,0,0.226864366320042,0.358779271377724,0.213557388818567,0,0,0.103052529238439,0.515281080091258,0.37223371266318,0.337552664482532,0.194874010322397,0,0.276149695926898,0,0,0,0.169560592310488,0.773043412653187,0.272746120590835,0.573609190778008,2.92736894711029,0.927708378250397,1.2781333715647,2.48786532036889,2.52320850875628,0.72995471815166,0,0,0,0.464367928031979,0,1.0647612003586,0.168584690078102,0.241011029883482,1.43382164552112,1.74303555273925,0.474541238222193,1.21348177344148,0.392442930250692,1.15424147083917,0,0,0.8231480226628,1.47008711385542,0,4.91413608338813,0.590789906681404,0.882926198829301,0.737930631258681,0.686271241194102,2.19500570817251,1.1240175325762,0.603173834469785,1.20364978706088,1.3032332212413,1.03993478527958,1.44331342025273,1.04337364477569,1.99594780200897,0.577465791044295,0.925971025153221,0.190254152234598,10.2726571734706,6.00940313466411,0,0,0,1.87467667973554,0.503946384596579,0.850650583454319,1.97028749946266,1.16253575405585,1.15014803749563,0,0.088048434013226,0.207328115540772,0,0,0,0,0,0,0,0,0,0.336393253036082,1.30788020649984,0.2933531432838,0.517086863031111,3.57656445851882,0,0.797814349754612,0,0,1.41849132023278,0,0.714889968290738,1.08524321078289,0.823240336780769,0.325736184293735,0,1.58390374586686,2.1100756394171,4.35766729300147,1.79951384127703,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0.112085143993527,0.197030760201927,0.215627574859517,0.128343036279748,0.254094624222463,0,1.54657762555539,1.00509759200609,0.637938751653163,0,0,0.414415513436035,0.12269149171914,1.50051156317903,0.542530047399471,0.831883446123229,0.713715955188647,1.26161932027148,0.585707074963566,0,0,0,0,0,0.347534457872331,1.37060810223918,0.686286847621712,0.206768026122887,0,0.213455115606889,0.909382714338778,3.32870879020994,3.0239029332968,0.496215615637554,0.306923946576125,0.561320188866147,0.512556597022804,0,0.160853921143607,0,0,0.177561725313127,0.328508624055237,0.519254429183621,0,0.846016147141356,2.6065841139427,1.84161977871793,0.114814448164607,0.182091168006717,0.131124414959424,3.15839729035188,2.46449078734127,3.92174884588428,4.38417673959782,2.95544560900052,0,0.170093705276516,0.647747748306418,0,2.43851793789468,4.01351819083883,0.764628819135115,0.831076008928724,1.34324852833307,0,0,1.79515087581472,2.95213181129735,4.88067591996455,0.618246069886334,0.0915694648183434,0.495056999523528,2.29706215198469,1.30012049207304,0,1.64340221096607,0,0.15350367472613,0,0.107420244868274,0.580066775656914,0,0.979352392114111,3.63626813794152,1.92190067365106,1.02090169995667,3.33820676823315,0.929691098594572,0.62962469366128,0,0.616067160352178,0,0,1.11194531462352,0,0,0,0.762520775695299,0.255897791311334,0,0.318203247925937,0.78494864019923,0.359744915166629,0,0.824686816419805,0,1.58510321173008,0.421258456238981,0,0.243713489631284,1.05650146756755,0.409499734223957,0.141405431953713,0,0.551365343546124,0.66343897524122,0.876901770507525,0,0,0.405820753925408,0.30982349809975,0.281695602532241,0.286822704408103,0.589494246078727,0.35667105148125,0.354761064070598,0.211107635297664,0.658589785919804,0.75894634753143,0.349934720244983,1.25088746543166,2.01090682660736,1.08890984861323,0.753150406214233,2.15252686335615,5.05414427002877,0.886860307073351,1.60806380144872,0,0,0,0,0,0,0,0,0.961416640147258,0,3.67560323971548,0.371606350251437,0,0.0711418433484141,0,0.199579371432817,0.5745161103971,0.635020748171649,0.324621940274555,0,0,0,0,0,0,0,0,0,0.614481528616916,0.223676107892416,0.500547425135725,0,0,0,0,0,0,1.49712432326576,0,0.36408156524854,0.111443384277478,2.84136146806413,1.19372242368845,1.48482340416319,0.614321404198464,0.994147647766298,0.984685914873589,0.111308705022906,1.15362711958732,2.53350489753592,0.398495976502139,0.276283915531148,1.76352923497993,0.613612095012929,0.246169610922139,0.311039587661807,1.3480252672099,2.68531762013414,0,0.0986434056369336,0,0,0,1.02044907978036,3.99227596002388,0.520855522170466,1.13697999995054,0,1.365521379426,1.01701460117107,4.49136595359079,2.41320361269025,0.874813840149763,0.868124974666461,3.54296554325536,3.0149109656352,0,2.10100593869327,1.77328571372128,1.53569778007781,1.52513848926586,5.85579725970134,0.384751292518985,0,0,0,0.108647371922008,0.31900115973192,1.09917112082235,0,0,0,0,0,0.588187602953219,1.00692952185506,0,0,1.05499032264014,1.14262965711403,0.424059214301822,1.08194319871046,0.995261931078505,0.442287822516696,0,2.37216902944498,0.86494757262552,0.730953646538188,0.202203398942031,1.60515529459758,2.81117334870407,0.364909578431332,3.32629852184552,0.485560759068186,3.55125962564451,1.20990716048664,1.53036380815245,0.126373159256976,20.143338201542,8.70980807736876,0,0.992975867626496,0.313932918407225,0,0,0,3.99187398170801,2.05784034570193,2.08942095792966,1.39781334593624,0,3.77349692027432,4.09300175682639,3.44884919623479,0.387956065953678,0.617792886840502,0.677942222341597,0.137041924646751,0,1.32952671507345,4.10657903743086,0.961905843018405,1.28071796843612,1.79828648623917,1.87317542300338,2.63434171181606,1.02956998717179,0.14405479798815,1.11827282008889,1.88555227693436,0.815425236441684,0.627617077873999,0.101998217636322,0.577901179803038,2.40168115483916,0.684526894459965,0,0.429765441419957,0.262887354279314,0.558564802544508,0,0,1.79711100449092,0,0,1.67958681216816,0,0,0,0,0,1.27955725969173,0,0.795229689809303,1.36203406111576,1.28602518772015,1.37539436597234,1.66176135211674,0.2249738915515,0.77380195455795,1.70098758642469,2.0126081255956,0.551639951094387,1.25891011523995,2.32320740342694,0.717149357331379,6.14128631422225,0.714695326373367,0.662091970365432,0.5085370753095,0.542999601753713,0,0.653174720218818,1.19730191562487,0.574647645245373,0.170388021785422,0.906496732161005,1.31897010310274,0,0.129282956361551,0.79339561045614,1.19760786519031,2.11444506695002,0.640724475406168,0.471612915298998,1.24271716604159,0,0.592834895693833,0.243585196761792,0.638341257770182,0,0,0.306345576763462,0,2.19875734750328,0,1.95242023843141,2.1282458220105,0.573409195690071,0.554645257684261,0.620964029413834,2.90532133366085,0.249960815924213,0.606596470166591,1.14186133417987,1.41159491818903,1.40500471742064,1.88397337194073,0.149254802886874,0.467426619694449,0,0.189403005275089,0.754703705257725,0,0.457680136793847,0.302461847526478,0,0.147855149989634,0,1.34940933649081,0.465788870628778,0,0,0,1.05180326298053,1.14241563650639,0,0,0.644463342254931,0,0.796191777397232,0,0.343395705182793,0.336749488765919,0,0.57785949122191,2.78774068787403,1.04397716786085,0.226705925512272,0,1.46842022703881,0.895444205407437,5.86722749605847,3.28926074368061,1.59020231351293,7.33073345429476,2.70307905044916,1.79369063011563,0,0,1.10606748921385,0.194860308839388,0.132864840313363,0.327130788511688,0.982829546539238,0.245772908753719,0.633936370075881,0.39997479170986,0.106691729694141,0,0.567515953566836,0,1.81843360035278,1.24415452006595,0,0.107824811396682,2.20172318598255,0.873677105536111,1.18812770967818,2.33832412111851,2.10690799240304,0,0.636008701306837,0,2.40171224485641,0,0.3062454773532,2.31225210347254,1.41696576325585,0.798169295285756,2.46139637088906,0.756215088665154,1.59061680667701,1.77623210195036,0,0,3.42112197708447,1.28400018965175,1.96393632455575,0,0,1.19349733269765,0.300841313397029,0.40341013740704,0,0,2.29280684514135,3.40068998299204,0.945526184657525,0.781078098613847,1.2401207790071,1.14148458349032,1.64092442705466,0.548257766857182,0.496211178389294,0.351742488719241,1.66091155931474,1.07140367175657,0.672567444437648,0.606965604236632,2.95960848756687,0.532214220975833,0.345701962667338,0,1.01954599465248,0.986591603442736,1.06374456795571,2.55832224351759,0.078493092850514,1.25692471932802,3.36326595976547,0.913158720509496,1.51149313853035,0.9555033757741,0.428859265059938,0,1.85986280589,0.869291361512897,0,0.828864656652147,2.21934020222135,0,0.430227358820278,0,0.170426809518315,1.69354820076372,5.0403511079691,0.93061915699296,0.955538938977433,0,1.47225350422864,4.87671699929078,0.647428837187895,1.33461648913121,11.598144313382,0,4.91272873270422,5.17272015419557,0,0.45178432815584,1.09940516745429,3.77407108916684,0.154348316215889,2.40415516554353,0,0,0.942706188406504,0.196308467114945,0,0,0.169927114687817,0,0,0,3.74963271071881,0,4.17255106783675,0.730336388246517,0.458729283404541,0.573358332605805,1.57771562193185,1.29183831362738,2.61810414204226,0,0.371995018166751,0.924351257262837,0.865253124247578,0,0.327796715891087,0.126698501011437,2.44773191380756,3.74104367371785,6.89211746511337,2.50707539292375,1.43979526614655,2.67964130156179,0,0.310298987585686,0.639701945702943,1.42838658878244,0.775066918032073,0.931120714437869,0,1.20929600728513,1.41482032270754,1.95945073107265,1.71116650542641,0.134704106029175,1.36272190246085,2.32862249582209,1.05824249194267,0.533636729388577,0,0.718601616852695,0,0.366724332548599,2.44137706989443,0,0,0.320568492303233 | |||
|short_description=p2@FAM71E1 | |||
}} |
Latest revision as of 11:16, 19 September 2015
Short description: | p2@FAM71E1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_FAM71E1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000270620, ENST00000391816, NM_138411, uc002psg.2, uc002psh.2, uc002psi.2_5end |
EntrezGene: | FAM71E1 |
HGNC: | 25107 |
UniProt: | Q6IPT2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.12e-32 | 253 |
epithelial cell of lung | 7.66e-10 | 19 |
endo-epithelial cell | 3.83e-09 | 42 |
respiratory epithelial cell | 6.05e-09 | 13 |
squamous epithelial cell | 1.01e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
respiratory tract epithelium | 7.66e-10 | 19 |
lung epithelium | 7.66e-10 | 19 |
respiratory primordium | 1.29e-09 | 38 |
endoderm of foregut | 1.29e-09 | 38 |
respiratory tract | 1.90e-09 | 54 |
thoracic segment organ | 6.98e-09 | 35 |
lung | 9.23e-09 | 22 |
respiratory tube | 9.23e-09 | 22 |
respiration organ | 9.23e-09 | 22 |
pair of lungs | 9.23e-09 | 22 |
lung primordium | 9.23e-09 | 22 |
lung bud | 9.23e-09 | 22 |
epithelial bud | 1.12e-08 | 37 |
thoracic cavity element | 2.01e-08 | 34 |
thoracic cavity | 2.01e-08 | 34 |
segment of respiratory tract | 6.12e-08 | 47 |
epithelial fold | 7.22e-08 | 47 |
primordium | 9.11e-08 | 160 |
respiratory system | 9.71e-08 | 74 |
endoderm-derived structure | 1.33e-07 | 160 |
endoderm | 1.33e-07 | 160 |
presumptive endoderm | 1.33e-07 | 160 |
trunk region element | 1.55e-07 | 101 |
embryo | 1.82e-07 | 592 |
organ system subdivision | 5.87e-07 | 223 |
subdivision of trunk | 6.20e-07 | 112 |
foregut | 9.87e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.05e-19 | 106 |
cell type cancer | 1.06e-15 | 143 |
cancer | 6.13e-08 | 235 |
respiratory system cancer | 6.14e-08 | 16 |
disease of cellular proliferation | 2.53e-07 | 239 |
lung cancer | 2.77e-07 | 15 |
squamous cell carcinoma | 6.08e-07 | 14 |