FFCP PHASE1:Hg19::chr19:55720862..55720880,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5794 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9672 | |||
|TSSclassifier=strong | |||
|UniProt=C9JCH2,Q9HD43 | |||
|association_with_transcript=0bp_to_ENST00000263434,ENST00000376350,NM_001161440,NM_002842,uc002qjq.2,uc002qjs.2,uc010esv.2_5end | |||
|cluster_id=chr19:55720862..55720880,- | |||
|coexpression_cluster_id=C1341 | |||
|description=CAGE_peak_1_at_PTPRH_5end | |||
|id=chr19:55720862..55720880,- | |||
|ontology_enrichment_celltype=CL:0000066!6.42e-13!254;CL:0000223!3.01e-08!59 | |||
|ontology_enrichment_celltype_v019=CL:1000415;1.44e-08;2!CL:1000497;2.13e-07;17!CL:0002518;2.13e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:1000415,1.39e-08,2;CL:1000497,2.18e-07,17;CL:0002518,2.18e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0006595;3.31e-08;86!UBERON:0009497;1.85e-07;13 | |||
|ontology_enrichment_disease=DOID:305!3.16e-25!106;DOID:0050687!3.91e-19!143;DOID:162!2.46e-15!235;DOID:14566!1.31e-14!239;DOID:299!1.49e-11!25;DOID:7!8.81e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:299;1.41e-11;25!DOID:4929;2.61e-09;2!DOID:3493;5.50e-09;2!DOID:3119;6.22e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.15e-17,106;DOID:0050687,4.41e-12,143;DOID:299,1.46e-11,25;DOID:4929,2.72e-09,2;DOID:3493,6.59e-09,2;DOID:162,1.08e-07,235;DOID:14566,2.12e-07,239;DOID:3119,6.23e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004921!2.61e-18!129;UBERON:0004185!2.61e-18!129;UBERON:0004119!4.59e-18!169;UBERON:0000925!4.59e-18!169;UBERON:0006595!4.59e-18!169;UBERON:0001007!7.79e-18!155;UBERON:0001555!7.79e-18!155;UBERON:0007026!7.79e-18!155;UBERON:0005409!3.37e-16!35;UBERON:0000077!5.32e-14!130;UBERON:0000466!1.97e-11!126;UBERON:0000160!1.31e-10!27;UBERON:0005177!1.32e-09!107;UBERON:0002294!4.13e-09!7;UBERON:0001173!4.13e-09!7;UBERON:0004912!4.13e-09!7;UBERON:0001041!7.74e-09!98;UBERON:0000464!1.65e-08!104;UBERON:0002075!1.17e-07!18;UBERON:0000945!1.20e-07!8;UBERON:0010039!1.20e-07!8;UBERON:0005911!1.24e-07!82;UBERON:0003104!2.81e-07!238;UBERON:0009142!2.81e-07!238;UBERON:0005172!2.94e-07!55;UBERON:0005173!2.94e-07!55;UBERON:0009497!9.17e-07!25;UBERON:0000015!9.17e-07!25;UBERON:0002423!9.17e-07!25;UBERON:0006235!9.17e-07!25;UBERON:0004161!9.17e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;4.62e-27;22!UBERON:0000160;7.10e-21;17!UBERON:0002294;3.62e-20;7!UBERON:0001173;3.62e-20;7!UBERON:0004921;1.60e-15;33!UBERON:0002108;1.04e-13;4!UBERON:0000059;1.04e-12;11!UBERON:0002110;1.59e-12;3!UBERON:0002075;5.91e-10;18!UBERON:0002394;9.39e-10;4!UBERON:0003928;9.39e-10;4!UBERON:0002423;6.99e-09;25!UBERON:0000945;9.05e-08;5!UBERON:0010039;9.05e-08;5!UBERON:0001155;1.58e-07;9!UBERON:0004907;1.63e-07;5!UBERON:0005172;2.54e-07;52!UBERON:0005173;2.54e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,6.39e-32,25;UBERON:0000160,6.33e-21,17;UBERON:0002294,1.63e-15,9;UBERON:0001173,1.63e-15,9;UBERON:0004912,1.63e-15,9;UBERON:0002108,1.06e-13,4;UBERON:0004921,1.64e-13,118;UBERON:0001007,2.17e-13,145;UBERON:0001555,2.17e-13,145;UBERON:0007026,2.17e-13,145;UBERON:0000059,9.18e-13,11;UBERON:0000945,1.41e-12,8;UBERON:0010039,1.41e-12,8;UBERON:0002110,1.53e-12,3;UBERON:0006242,1.53e-12,3;UBERON:0004119,1.52e-11,160;UBERON:0000925,1.52e-11,160;UBERON:0006595,1.52e-11,160;UBERON:0005172,8.52e-11,54;UBERON:0005173,8.52e-11,54;UBERON:0005177,1.70e-10,101;UBERON:0002075,4.99e-10,18;UBERON:0002417,2.05e-09,60;UBERON:0000916,2.05e-09,60;UBERON:0009497,7.24e-09,25;UBERON:0000015,7.24e-09,25;UBERON:0002423,7.24e-09,25;UBERON:0006235,7.24e-09,25;UBERON:0004161,7.24e-09,25;UBERON:0004907,1.45e-07,5;UBERON:0001155,1.54e-07,9;UBERON:0009569,5.68e-07,112 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.614942192715568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.899756920638513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368323955743585,0,0,0,2.25599806453706,0.847168708148562,0,0,0.211103257785751,0,0,0,0,0,1.00337954770971,1.01950509218015,1.66215201785745,0,0,0,0,0,0.325378394664303,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0.255225424989168,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55507742614196,0,1.84344458585075,1.3420566473545,0.834245708559542,0,0,0,0,0.33307196799782,0,7.11134053551235,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0.19924798825107,2.48655523978033,0,0,0,0.622079175323615,2.06697207638852,4.47552936689023,0,0.591860433821602,0,0,0,0,0,0,0,0,0,3.0510438035132,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.153900517007594,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.979396848954886,0,0,10.9478812418636,7.96118080530053,10.9985426088053,0,0,0,0.067401132980677,0,0,0,1.9566461893209,0.242780379534093,0,1.20990716048664,0,0,0,0,0,0,0,0,0.569219092059585,0.138674673013139,0.867798691675654,1.17590876897253,0,0,3.26773461696071,0,0.146178634172371,0.0821154570532092,0.0969890164884194,0.706049013532002,0.677942222341597,0,0,0,1.36885967914362,2.48492342779755,14.9417096317547,0.39961921916426,5.33134543470192,0,0,0,0,0.235694034616795,0,0.104602846312333,0,0,0,0,0,0.429765441419957,0,0.279282401272254,0,0,0.199679000498991,0,0,0.0671834724867263,0,3.49487848582361,0.157566364614447,0.164831716762333,0.202210631562555,1.27955725969173,0,0,0,0,0,0,0.899895566206002,2.32140586367385,0,0,0,0.0524545881349981,0.105600336519406,0,0.191915197319445,0,0,0,0,0,0,0,0.082092520749339,0,0,0.293104467356165,0,0,0,0.855434189421647,12.6866704017001,0.106787412567695,0,0,0,0,0,1.27668251554036,0,0,0,0,0.471162288750703,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,1.07220795687463,0.521988583930423,0,0,0,0,0.617602894321944,0.219284049578707,0,0.578742114812744,0,0,0,0,0,0,0.132864840313363,0,0,0,7.8185485642692,0,0.106691729694141,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235939446695481,0,0.115525666150338,0,0,0,0.150420656698515,0,0.781514011233092,0,0.163771917510097,9.31493343167385,0,0,0,0,0,0,1.48863353516788,0,0.766574565837572,0,0,0,0,0.0887023701626388,0,0,0,0,0.590969204419841,0.222462803784138,0.313972371402056,0,1.40136081656895,3.65263488203798,2.80705868584208,1.9110067515482,0.0714765441766563,0,0.23248285073625,0,0,0,0,0,0.430227358820278,0,0,0,1.3746412112643,0,0,0.111855431797792,1.17780280338292,16.8246736475532,0,0,0,0,0,0,0,0,0,1.05673990496671,18.2902754715829,5.24542945209498,50.7942680070445,0,0,0,0,0,0.169927114687817,20.8644297915275,3.99638905436179,0,1.42843150884526,0,0.401206833445841,9.49437304720472,0,0,0,0,0,5.290268405154,0,0,0,0,0,0,0,0.26721740526556,0.18378979906969,0,0,0.267964130156178,0,0,1.27940389140589,0,0,0,0.224263725161227,0,0,0.435433495793923,0,0.134704106029175,5.09227658288002,0,0,0,0,4.31160970111617,0,0,0,2.66302709674205,0,0 | |||
|short_description=p1@PTPRH | |||
}} |
Latest revision as of 00:51, 20 September 2015
Short description: | p1@PTPRH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PTPRH_5end |
Coexpression cluster: | C1341_smallcell_small_gall_colon_temporal_signet_adenocarcinoma |
Association with transcript: | 0bp_to_ENST00000263434, ENST00000376350, NM_001161440, NM_002842, uc002qjq.2, uc002qjs.2, uc010esv.2_5end |
EntrezGene: | PTPRH |
HGNC: | 9672 |
UniProt: | C9JCH2Q9HD43 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of gall bladder | 1.39e-08 | 2 |
kidney cell | 2.18e-07 | 17 |
kidney epithelial cell | 2.18e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 6.39e-32 | 25 |
intestine | 6.33e-21 | 17 |
biliary system | 1.63e-15 | 9 |
biliary tree | 1.63e-15 | 9 |
biliary bud | 1.63e-15 | 9 |
small intestine | 1.06e-13 | 4 |
subdivision of digestive tract | 1.64e-13 | 118 |
digestive system | 2.17e-13 | 145 |
digestive tract | 2.17e-13 | 145 |
primitive gut | 2.17e-13 | 145 |
large intestine | 9.18e-13 | 11 |
stomach | 1.41e-12 | 8 |
food storage organ | 1.41e-12 | 8 |
gallbladder | 1.53e-12 | 3 |
gall bladder primordium | 1.53e-12 | 3 |
endoderm-derived structure | 1.52e-11 | 160 |
endoderm | 1.52e-11 | 160 |
presumptive endoderm | 1.52e-11 | 160 |
abdomen element | 8.52e-11 | 54 |
abdominal segment element | 8.52e-11 | 54 |
trunk region element | 1.70e-10 | 101 |
viscus | 4.99e-10 | 18 |
abdominal segment of trunk | 2.05e-09 | 60 |
abdomen | 2.05e-09 | 60 |
epithelium of foregut-midgut junction | 7.24e-09 | 25 |
anatomical boundary | 7.24e-09 | 25 |
hepatobiliary system | 7.24e-09 | 25 |
foregut-midgut junction | 7.24e-09 | 25 |
septum transversum | 7.24e-09 | 25 |
lower digestive tract | 1.45e-07 | 5 |
colon | 1.54e-07 | 9 |
subdivision of trunk | 5.68e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.15e-17 | 106 |
cell type cancer | 4.41e-12 | 143 |
adenocarcinoma | 1.46e-11 | 25 |
tubular adenocarcinoma | 2.72e-09 | 2 |
signet ring cell adenocarcinoma | 6.59e-09 | 2 |
cancer | 1.08e-07 | 235 |
disease of cellular proliferation | 2.12e-07 | 239 |
gastrointestinal system cancer | 6.23e-07 | 14 |