FFCP PHASE1:Hg19::chr1:236228403..236228414,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4811 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7821 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000366595_5end | |||
|cluster_id=chr1:236228403..236228414,- | |||
|coexpression_cluster_id=C2574 | |||
|description=CAGE_peak_3_at_NID1_5end | |||
|id=chr1:236228403..236228414,- | |||
|ontology_enrichment_celltype=CL:0000055!4.66e-23!180;CL:0000057!7.37e-16!75;CL:0000222!3.20e-12!119;CL:0000183!1.15e-09!59;CL:0000680!1.30e-08!57;CL:0000056!1.30e-08!57;CL:0000355!1.30e-08!57;CL:0000187!4.50e-08!54;CL:0002620!6.59e-08!23;CL:0000136!8.76e-08!15 | |||
|ontology_enrichment_celltype_v019=CL:0000136;2.47e-08;13!CL:0002620;2.47e-08;23!CL:0000057;2.59e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.45e-17,76;CL:0000222,3.42e-11,121;CL:0000680,1.13e-08,58;CL:0000056,1.13e-08,58;CL:0000355,1.13e-08,58;CL:0002620,1.84e-08,23;CL:0000136,2.50e-08,15;CL:0000187,4.27e-08,55;CL:0000393,8.65e-07,61;CL:0000211,8.65e-07,61;CL:0000115,9.67e-07,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!2.05e-15!143;UBERON:0000468!4.17e-14!659;UBERON:0000475!1.66e-13!365;UBERON:0002100!3.98e-13!216;UBERON:0000490!4.34e-12!138;UBERON:0002049!9.43e-12!79;UBERON:0007798!9.43e-12!79;UBERON:0000914!1.62e-11!83;UBERON:0002329!1.62e-11!83;UBERON:0003077!1.62e-11!83;UBERON:0003059!1.62e-11!83;UBERON:0007282!1.62e-11!83;UBERON:0009618!1.62e-11!83;UBERON:0007285!1.62e-11!83;UBERON:0004290!4.43e-11!70;UBERON:0000486!1.55e-10!82;UBERON:0003914!1.78e-10!118;UBERON:0000481!2.31e-10!347;UBERON:0002385!3.58e-10!63;UBERON:0001015!3.58e-10!63;UBERON:0000383!3.58e-10!63;UBERON:0000119!3.76e-10!312;UBERON:0000467!5.52e-10!625;UBERON:0000480!9.16e-10!626;UBERON:0001134!1.05e-09!61;UBERON:0002036!1.05e-09!61;UBERON:0003082!1.05e-09!61;UBERON:0000483!2.25e-09!309;UBERON:0004872!3.70e-09!84;UBERON:0001009!6.43e-09!113;UBERON:0000477!9.16e-09!286;UBERON:0000055!1.34e-08!69;UBERON:0003104!2.92e-08!238;UBERON:0009142!2.92e-08!238;UBERON:0004535!3.78e-08!110;UBERON:0003103!8.47e-08!69;UBERON:0003102!3.39e-07!95;UBERON:0002417!5.73e-07!61;UBERON:0000916!5.73e-07!61;UBERON:0004111!9.03e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;4.84e-07;31!UBERON:0001015;4.84e-07;31!UBERON:0000383;4.84e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,7.18e-19,160;UBERON:0009142,7.18e-19,160;UBERON:0005256,5.07e-15,122;UBERON:0000490,8.25e-14,148;UBERON:0007503,9.71e-13,78;UBERON:0002329,2.55e-11,71;UBERON:0003059,2.55e-11,71;UBERON:0007282,2.55e-11,71;UBERON:0004290,2.55e-11,71;UBERON:0009618,2.55e-11,71;UBERON:0002100,2.67e-11,199;UBERON:0007524,2.85e-11,73;UBERON:0000486,6.53e-11,83;UBERON:0003077,7.32e-11,72;UBERON:0007285,7.32e-11,72;UBERON:0002049,1.22e-10,78;UBERON:0007798,1.22e-10,78;UBERON:0002385,2.47e-10,64;UBERON:0001015,2.47e-10,64;UBERON:0000383,2.47e-10,64;UBERON:0003914,6.36e-10,117;UBERON:0001134,7.77e-10,62;UBERON:0002036,7.77e-10,62;UBERON:0003082,7.77e-10,62;UBERON:0001009,6.18e-09,112;UBERON:0004535,4.01e-08,109;UBERON:0004872,5.24e-08,83;UBERON:0000119,6.65e-08,309;UBERON:0000055,1.56e-07,68;UBERON:0003103,2.33e-07,68;UBERON:0000483,3.37e-07,306;UBERON:0003102,8.72e-07,99;UBERON:0000926,8.81e-07,315;UBERON:0004120,8.81e-07,315;UBERON:0006603,8.81e-07,315;UBERON:0002199,9.78e-07,46;UBERON:0002416,9.78e-07,46 | |||
|phase1_expression=18.5311946855968,8.99222200342129,24.244157504507,9.00659685178174,34.8629653653284,4.36169262050184,5.06599756336621,17.6881564559513,24.8126346789847,1.22866968250754,0.697801167972428,0.436882744260345,0.791300934685361,11.1389717664042,16.5698687863958,3.36162573225888,2.41077811209591,2.19093027116212,0.975865597581014,3.69363174230364,4.48801520737357,4.07491137921514,2.86235987131057,1.77936752594749,1.63205431473244,0.61130724598361,0,0.393553906568396,0.393364276848904,0,0,0,0,0.369754010166788,0,0,0,0.553995408531877,1.20326668482085,0,0,0,0,0.145398238779565,0,0,0.464858073811369,0,0,0,0.256160706529101,0.709446689665756,0.689491361473237,0.645484683583826,0,0.188242339542605,0.545812300115692,0,0.612167784741805,0.320929027076094,0,0,0.398927315243264,0.426224750532694,0.290209238628584,0,1.86846674698672,0.251248665256743,0,0,3.02699751316684,0,0.949387162322653,0.211255286311942,1.06302149982522,0.628975936525128,0.336985893439485,0.450530678524519,0,0.570025487482497,0.59675003159727,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,7.37770945674,5.11450247374121,6.86734389530676,7.01873074890245,2.60723734129483,0.795285947051099,1.45990461090791,1.70162670895322,1.10864698731282,1.93236528524877,2.75056058545197,0,0,0,0,0,0,0,0,1.19257444420023,3.4409383804245,4.51282652089873,2.82653970962005,2.09749718104953,1.92582629358047,0.835979866147242,5.42675194255591,6.40379272836078,8.36801531911676,10.876391561947,3.04108842287405,19.0368404887572,3.67663080345869,2.43042584364528,4.91148505562439,7.18493992403743,2.81528701208306,3.06633274931766,4.74632829784064,3.29763139074733,0,0,0.436094052142534,6.95760732373446,3.16576279161449,0.794455084879313,21.2259099354122,3.54668382198357,0.560677600142307,5.33744978648525,1.97334038733728,16.1829738407878,9.83387906108723,12.7500284428498,42.2287223129359,33.9943795443199,15.6995359328644,4.68240115245481,2.2818872861778,6.87463930538285,4.57994544710683,4.85618833104395,3.93262258766296,5.9204709663919,2.94802361548243,10.4359038987523,9.50402285825643,6.67620709052104,16.3829045148845,12.9351265526923,4.71341119071385,6.13080747372624,3.3247693858102,3.95079858792754,1.5324389789951,7.51190294532984,2.49550802952046,9.50765069150968,12.3863285514769,9.32500365102072,13.2040082277137,6.28620428354477,9.01741890159702,5.02515512095292,12.1518959213712,4.96928726322113,7.82544700156755,6.07529331039176,11.9618082045921,11.005297368015,3.72782763442269,4.23901480776219,0,0,0,1.34171076742555,1.98794652482228,2.32387885739037,2.17688215532278,1.00928340350251,0,3.12899064659632,6.43240938192885,1.38134921352481,9.28735856063958,4.33127689001751,0,0,0,0,0,0,0,0,0,12.548642728619,11.2193419042757,8.231480226628,19.1111324801205,0,3.9313088667105,8.86184860022106,0,1.59884970106048,3.94605963686609,0.109750285408626,0,0,0.0925884451585296,9.77424915930974,8.31947828223663,1.44331342025273,1.97081688457631,6.34006948873437,8.37325397014228,7.40776820122577,8.37118269832232,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0.414656231081544,0,0.25248486685276,1.14296209725904,2.29193055334967,1.17217447210047,6.84289784090821,1.33675740514321,0.300343057843917,0.571652865261156,16.3711383144227,27.9014444053299,5.06034172164555,2.97324946242889,53.6484668777824,7.607724773004,13.5628439458284,11.4408180602503,7.20180647933998,2.83698264046557,6.39413229638638,37.746190325751,77.5948895709763,6.58592269424615,6.84045987016844,34.4730190280269,3.16780749173372,0.602878754119172,1.74306691720059,1.59956785891291,0,0,2.10833939483032,2.63587341040741,1.14861935834114,1.42636905040718,3.18518874668674,8.6300055471161,3.22309733831812,0,0,0,0,1.01637849688985,0,0,0,0,0,0,0,25.397138785862,10.0034104211935,16.8184314693836,5.61521326133179,1.78428988797162,3.78485796081443,3.5142424497814,8.12554469264841,0,10.3473071292505,3.98535359121262,2.58116835958384,3.38846096425523,43.0762546418029,50.7852267240067,0,0,0.213455115606889,0,0,2.11673205330776,6.94701861892575,5.83155498494637,7.85848264412606,5.38184426873944,4.09365799253363,2.41280881715411,2.96836132889982,2.00472601943452,2.13074070375753,1.8067974323038,1.03850885836724,2.32420756919918,1.45031339509947,0.601519410909855,0.184161977871793,9.29997030133315,5.09855270418808,5.37610101333639,1.35359883872224,1.07821471946181,1.56869953835371,4.38417673959782,1.37217117560738,18.1973414513435,5.78318597940153,4.75015015424707,13.880452742126,3.25135725052623,6.02027728625824,1.52925763827023,0,1.56712328305525,0,0,0.769350375349168,1.31205858279882,0,6.80070676874967,1.28197250745681,0.742585499285292,0.574265537996172,0,3.21367859688319,3.48014585851639,7.85647947284686,9.21022048356777,7.16750176919559,12.9978496290611,10.8762520435671,6.13631717395926,6.49933860221183,0,0,0,0,0.464845549297286,5.98143458978216,2.0911118104818,6.16067160352178,1.06461206063404,4.34966496037536,3.3358359438705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| |||
|short_description=p3@NID1 | |||
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Latest revision as of 13:54, 16 September 2015
Short description: | p3@NID1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NID1_5end |
Coexpression cluster: | C2574_Mesenchymal_Pericytes_Fibroblast_Adipocyte_Nucleus_Meningeal_stomach |
Association with transcript: | 0bp_to_ENST00000366595_5end |
EntrezGene: | NID1 |
HGNC: | 7821 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.45e-17 | 76 |
mesodermal cell | 3.42e-11 | 121 |
muscle precursor cell | 1.13e-08 | 58 |
myoblast | 1.13e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.13e-08 | 58 |
skin fibroblast | 1.84e-08 | 23 |
fat cell | 2.50e-08 | 15 |
muscle cell | 4.27e-08 | 55 |
electrically responsive cell | 8.65e-07 | 61 |
electrically active cell | 8.65e-07 | 61 |
endothelial cell | 9.67e-07 | 36 |