FFCP PHASE1:Hg19::chr1:50889155..50889173,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=63950 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13908 | |||
|TSSclassifier=strong | |||
|UniProt=Q96SC8 | |||
|association_with_transcript=0bp_to_ENST00000404795_5end | |||
|cluster_id=chr1:50889155..50889173,- | |||
|description=CAGE_peak_2_at_DMRTA2_5end | |||
|id=chr1:50889155..50889173,- | |||
|ontology_enrichment_celltype=CL:0002076!4.71e-13!43;CL:0000223!2.94e-09!59;CL:0000068!1.16e-07!3;CL:0000069!1.16e-07!3;CL:0000307!1.16e-07!3;CL:0000377!1.16e-07!3;CL:0002368!2.79e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0000307;3.06e-17;3!CL:0000575;1.49e-12;2!CL:0002202;2.94e-10;9!CL:0002632;2.94e-10;9!CL:0000222;2.73e-07;1!CL:0002252;2.73e-07;1!CL:0002368;4.00e-07;13!CL:0002174;9.50e-07;1!CL:1001319;9.50e-07;1!CL:1000600;9.50e-07;1!CL:0000501;9.50e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,4.94e-17,3;CL:0000069,4.94e-17,3;CL:0000307,4.94e-17,3;CL:0000377,4.94e-17,3;CL:0000575,1.41e-12,2;CL:0002202,3.62e-10,9;CL:0002632,3.62e-10,9;CL:0002076,1.62e-09,42;CL:0002252,2.99e-07,1;CL:0002368,4.60e-07,13 | |||
|ontology_enrichment_development_v019=CL:0000377;3.06e-17;3!UBERON:0000358;4.13e-07;1 | |||
|ontology_enrichment_disease=DOID:1749!3.40e-09!14;DOID:4362!2.59e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.77e-14;14!DOID:0050619;9.50e-07;1!DOID:178;9.50e-07;1!DOID:326;9.50e-07;1!DOID:3978;9.50e-07;1!DOID:3394;9.50e-07;1!DOID:5844;9.50e-07;1!DOID:1357;9.50e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,5.98e-14,14;DOID:0050619,6.76e-07,1;DOID:1357,6.76e-07,1;DOID:162,7.78e-07,235;DOID:178,8.98e-07,1;DOID:326,8.98e-07,1;DOID:3978,8.98e-07,1;DOID:3394,8.98e-07,1;DOID:5844,8.98e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005178!2.00e-09!34;UBERON:0002224!2.00e-09!34;UBERON:0005181!4.69e-09!35;UBERON:0005743!6.30e-09!86;UBERON:0001017!9.05e-09!82;UBERON:0000073!2.41e-08!94;UBERON:0001016!2.41e-08!94;UBERON:0003126!7.31e-08!7;UBERON:0001005!7.31e-08!7;UBERON:0007196!5.36e-07!14;UBERON:0001558!5.36e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0003126;8.19e-13;7!UBERON:0001005;8.19e-13;7!UBERON:0005178;7.23e-11;34!UBERON:0002224;7.23e-11;34!UBERON:0005181;1.60e-09;35!UBERON:0007196;3.56e-09;15!UBERON:0001558;3.56e-09;15!UBERON:0000072;2.74e-08;37!UBERON:0004645;9.50e-07;1!UBERON:0001764;9.50e-07;1!UBERON:0001825;9.50e-07;1!UBERON:0001256;9.50e-07;1!UBERON:0001259;9.50e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003126,1.29e-12,7;UBERON:0001005,1.29e-12,7;UBERON:0005178,7.85e-12,34;UBERON:0002224,7.85e-12,34;UBERON:0005181,1.89e-11,35;UBERON:0007196,4.61e-09,15;UBERON:0001558,4.61e-09,15;UBERON:0008947,3.46e-08,38;UBERON:0003258,3.46e-08,38;UBERON:0000915,3.16e-07,52;UBERON:0001764,6.76e-07,1;UBERON:0001825,6.76e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821246550437305,0.125542639594803,0,0,0,0,0,0,0,0.90361775633475,5.54631015250181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0,0.196468613246569,2.18577172975525,2.59549109949101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05265836499774,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,0,0.370353780634118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,0,0.773288812777695,0.670065061337395,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0.165018999841176,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21310859268678,1.34060455107157,1.08890984861323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.15068535015921,2.23676107892416,2.16903884225481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422250816255987,0.398495976502139,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,1.593108275997,0,0,0,0,0.520874984799877,0,0,0,0,0,0,0.871507708151921,1.25481369850743,0,0,0,0.807818799687949,1.52106320690811,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0.269604531922708,0,0,0,0,0,0,0,0,0,0.300646838828985,0.103688191397247,0,0,0,0,0,9.84590178393285,0.173559738335131,0,1.39294730528644,0,0,0,0,0,0.387956065953678,0,0,0,0,0.0633107959558787,2.54216797555244,0,0,0.39961921916426,1.72908500584927,0,0,0,0,0,0,0.313808538937,0,0,0,0,0,1.28929632425987,0,0,0,0,1.39775300349294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,1.97216073266129,0.383830394638891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72759505875258,0,0,0,0,0.110929051536852,0.310482014706917,0.138348634936231,3.12451019905266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.78554694685953,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6208787907713,0,0,0,0,0,0,0,1.67855409263333,0.622077260032973,0,0.970423302570136,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0.504143392443436,0,0,0,0,4.12894031717091,0,0,0,0,0,0,0,0,0.785720083444267,0,0,0,0.781078098613847,0,0.126831620387814,0,0,0,0,1.78867398695433,0,0,0.606965604236632,0.682986574053893,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467878926924211,0,0,0.11294608203896,0,2.41540549706678,0,0,0.940634592723046,0,0,0,0.297046400327086,0,0,0,0,0,3.57107877211315,0,1.36410323371586,0,0,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0.504665699340316,0,0,0,0,0.459474497674225,0,0.151557396436479,1.07185652062471,0,0.20686599172379,0,0,0,0,0,0,0,0.217716747896961,0,0,1.07583308089015,0.332660356546013,1.05824249194267,0,0,0,2.34640942403454,0,0,0,0,0 | |||
|short_description=p2@DMRTA2 | |||
}} |
Latest revision as of 10:57, 18 September 2015
Short description: | p2@DMRTA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_DMRTA2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000404795_5end |
EntrezGene: | DMRTA2 |
HGNC: | 13908 |
UniProt: | Q96SC8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 4.94e-17 | 3 |
branched duct epithelial cell | 4.94e-17 | 3 |
tracheal epithelial cell | 4.94e-17 | 3 |
tracheoblast | 4.94e-17 | 3 |
corneal epithelial cell | 1.41e-12 | 2 |
epithelial cell of tracheobronchial tree | 3.62e-10 | 9 |
epithelial cell of lower respiratory tract | 3.62e-10 | 9 |
endo-epithelial cell | 1.62e-09 | 42 |
epithelial cell of esophagus | 2.99e-07 | 1 |
respiratory epithelial cell | 4.60e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
trachea | 1.29e-12 | 7 |
respiratory airway | 1.29e-12 | 7 |
thoracic cavity element | 7.85e-12 | 34 |
thoracic cavity | 7.85e-12 | 34 |
thoracic segment organ | 1.89e-11 | 35 |
tracheobronchial tree | 4.61e-09 | 15 |
lower respiratory tract | 4.61e-09 | 15 |
respiratory primordium | 3.46e-08 | 38 |
endoderm of foregut | 3.46e-08 | 38 |
thoracic segment of trunk | 3.16e-07 | 52 |
maxillary sinus | 6.76e-07 | 1 |
paranasal sinus | 6.76e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 5.98e-14 | 14 |
paranasal sinus cancer | 6.76e-07 | 1 |
maxillary sinus cancer | 6.76e-07 | 1 |
cancer | 7.78e-07 | 235 |
vascular disease | 8.98e-07 | 1 |
ischemia | 8.98e-07 | 1 |
extrinsic cardiomyopathy | 8.98e-07 | 1 |
myocardial ischemia | 8.98e-07 | 1 |
myocardial infarction | 8.98e-07 | 1 |