FFCP PHASE1:Hg19::chr2:138722028..138722057,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3176 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5028 | |||
|TSSclassifier=strong | |||
|UniProt=Q9BRW6 | |||
|association_with_transcript=0bp_to_ENST00000280096,ENST00000467390,ENST00000475675_5end | |||
|cluster_id=chr2:138722028..138722057,+ | |||
|description=CAGE_peak_1_at_HNMT_5end | |||
|id=chr2:138722028..138722057,+ | |||
|ontology_enrichment_celltype=CL:0002009!2.32e-31!65;CL:0002194!2.78e-30!63;CL:0000576!2.78e-30!63;CL:0000040!2.78e-30!63;CL:0000559!2.78e-30!63;CL:0000557!9.89e-26!71;CL:0000860!3.56e-23!45;CL:0000839!7.46e-23!70;CL:0002057!6.33e-22!42;CL:0000766!9.51e-21!76;CL:0000763!6.74e-12!112;CL:0000049!6.74e-12!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.90e-17;39!CL:0000234;3.90e-17;39!CL:0000576;8.95e-17;48!CL:0000860;2.44e-16;33!CL:0002057;2.44e-16;33!CL:0000766;5.08e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,2.32e-31,61;CL:0002194,2.87e-30,59;CL:0000576,2.87e-30,59;CL:0000040,2.87e-30,59;CL:0000559,2.87e-30,59;CL:0000473,2.58e-26,48;CL:0000234,2.58e-26,48;CL:0000557,2.86e-25,67;CL:0000839,1.61e-22,66;CL:0000860,2.85e-22,42;CL:0002057,2.85e-22,42;CL:0000766,1.35e-20,72;CL:0000763,7.29e-12,108;CL:0000049,7.29e-12,108 | |||
|ontology_enrichment_development_v019=CL:0002057;2.89e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.15e-21!80;UBERON:0002405!1.03e-19!115;UBERON:0001474!2.91e-19!86;UBERON:0002390!2.26e-17!102;UBERON:0003061!2.26e-17!102;UBERON:0000062!4.58e-17!511;UBERON:0000922!5.43e-17!612;UBERON:0004765!7.74e-17!101;UBERON:0001434!7.74e-17!101;UBERON:0002050!1.06e-16!605;UBERON:0005423!1.06e-16!605;UBERON:0007023!1.18e-16!115;UBERON:0000468!1.46e-16!659;UBERON:0000923!2.49e-16!604;UBERON:0005291!2.49e-16!604;UBERON:0006598!2.49e-16!604;UBERON:0002532!2.49e-16!604;UBERON:0002193!6.04e-15!112;UBERON:0000467!2.51e-14!625;UBERON:0000480!5.22e-14!626;UBERON:0002204!2.15e-13!167;UBERON:0000926!1.49e-11!448;UBERON:0004120!1.49e-11!448;UBERON:0006603!1.49e-11!448;UBERON:0000479!3.13e-09!787;UBERON:0005743!4.37e-07!86;UBERON:0001017!5.48e-07!82;UBERON:0001049!5.90e-07!57;UBERON:0005068!5.90e-07!57;UBERON:0006241!5.90e-07!57;UBERON:0007135!5.90e-07!57 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.40e-21,76;UBERON:0001474,8.82e-19,82;UBERON:0002390,2.39e-17,98;UBERON:0003061,2.39e-17,98;UBERON:0004765,3.33e-17,90;UBERON:0007023,1.18e-16,114;UBERON:0001434,2.76e-16,100;UBERON:0002050,1.06e-15,564;UBERON:0000923,1.06e-15,560;UBERON:0010316,1.06e-15,560;UBERON:0005291,1.06e-15,560;UBERON:0006598,1.06e-15,560;UBERON:0010317,1.06e-15,560;UBERON:0002532,1.06e-15,560;UBERON:0002405,1.87e-15,93;UBERON:0005423,8.97e-15,581;UBERON:0002193,1.20e-14,108;UBERON:0000922,3.39e-14,592;UBERON:0002204,9.15e-13,167;UBERON:0000926,6.03e-10,315;UBERON:0004120,6.03e-10,315;UBERON:0006603,6.03e-10,315;UBERON:0000479,6.66e-08,773;UBERON:0011216,2.34e-07,223 | |||
|phase1_expression=51.233302954297,30.6163749164106,28.4727896273862,12.0087958023756,11.6209884551095,5.23403114460221,5.06599756336621,5.05375898741465,11.2309820125931,3.19454117451962,0.697801167972428,0.655324116390517,0,6.06455129504228,2.98257638155124,5.3786011716142,1.80808358407193,1.46062018077475,0,1.60057375499824,0.204000691244253,0.940364164434263,14.884271330815,5.06435372769671,3.26410862946487,0,0,0,15.3412067971073,18.039981710569,17.4942219347166,1.83884244895785,0.30120591877825,1.10926203050036,0,0,6.45920966536664,31.577738286317,19.0517225096635,15.8417935622572,172.414915164742,101.054823797922,132.90899289924,56.123720168912,31.74157926986,30.323007648477,39.5129362739664,24.6700732813095,26.6347478969789,33.6600099016916,33.044731142254,36.8912278626193,52.401343471966,29.0468107612722,36.5651513804723,40.8485876807452,26.471896555611,35.9557575112135,47.136919425119,33.3766188159137,24.9341479061626,34.6343865196052,34.5072127685423,22.1636870277001,49.9159890441165,21.5606385382633,19.9303119678584,32.6623264833766,28.1600775946909,30.8408159481266,43.5887641896025,33.5132648748684,33.5450130687338,54.292608582169,48.4737803920299,64.155545525563,65.7122492206996,66.5283635287873,54.0037971302189,37.9066949175861,29.8375015798635,40.916770443278,0,0.546138611262131,0,5.12076267079809,1.20118796110804,1.14950487990897,0.661044872784862,0.954053754535364,0.569212969109448,0,0.382273228125229,0,4.48406850385229,5.00429761072646,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91139248594458,0,0,1.95747654801105,0.76791966692651,4.99722906209383,7.34009481336452,0,0,0,0,31.694892620815,24.8159318090345,14.0648818027883,6.86734389530676,5.51471701699479,13.6155727823174,3.9764297352555,6.32625331393427,6.52290238432068,3.99112915432615,1.93236528524877,18.9264764094195,0,0,37.6474976639433,33.9552987733571,33.1065321691974,1.90792499444274,1.71598473234038,0.74291500265913,2.58391129576717,4.30117297553062,3.12426451446835,1.69592382577203,1.25849830862972,0.275118041940067,1.25396979922086,1.8089173141853,0.35576626268671,1.00416183829401,2.01414658554573,0.760272105718513,1.95249646038536,1.83831540172934,4.0507097394088,15.2702535365776,6.51135180615892,10.5854791654323,1.53316637465883,0,1.09921046358244,0,0,0,9.44246708221105,2.78587125662075,3.97227542439656,0.860509862246441,3.90135220418193,4.48542080113846,1.06748995729705,2.4666754841716,23.963249725782,4.58016285036939,4.7403951902903,0.756787138224657,3.45705554687999,2.57753575017176,10.9256026890612,2.85235910772225,16.5888035412499,2.81842796745036,3.0755859429945,2.94946694074722,5.30800845262722,4.91337269247072,3.61640234115179,13.0680314301026,14.0942149688777,1.82032272387605,3.59309070908119,4.71341119071385,1.87677779807946,4.15596173226274,4.82875382968922,7.96868269077451,13.5214253015937,7.37309190540137,0.89694817844431,5.55249210928275,5.08636562782948,0,1.03052529238439,3.09168648054755,6.32797311527405,1.68776332241266,0.876933046450788,1.51460264546469,8.56064057373384,2.7479829659198,0.355009592516614,1.10827308050404,0.847802961552438,0.966304265816484,0.272746120590835,0.286804595389004,1.95157929807353,2.25300606146525,3.71820617182459,4.66474747569167,4.03713361401005,1.45990943630332,4.69348596989448,4.5026865673502,0,53.8666796517096,24.5439023767659,17.0361792057375,14.3296986566386,13.014595613708,18.0882115281126,16.9945966392077,13.7616959084436,18.6067205261027,17.4637103961558,13.4661504931237,2.21446636387394,1.40241773803446,1.6462960453256,0,65.912618107352,27.5191620669735,27.1763357073446,0,59.6493926934101,3.43135620597051,0.658501712451753,0,1.40740561376283,0.555530670951178,2.28065813717227,1.03993478527958,1.44331342025273,1.507095264676,2.81780866165972,1.29929802984966,0.462985512576611,1.33177906564219,5.53143078571493,6.00940313466411,183.431669535111,56.161023633417,87.0978611011948,2.81201501960331,4.87148171776693,0.850650583454319,0,0.581267877027924,3.83382679165211,0,0,0.207328115540772,0.144119953416961,0.6312121671319,32.1299345118375,9.54971063895694,5.86087236050235,6.84289784090821,20.4626710479614,39.3449405775532,43.1597913272173,1.90622843387113,3.92364061949952,9.90066858582825,6.72212921940444,10.7296933755565,14.370146793452,27.3916260082417,14.5610411675913,4.11531798819427,0,1.5985330740966,17.3003372326359,2.71310802695722,0.823240336780769,22.8015329005615,16.3480296421571,6.33561498346743,14.7705294759197,9.58686804460323,4.59875759437462,51.0819878693,88.8995051834864,90.6585939777036,1.4377491329495,0,5.70547620162874,12.8855362934145,14.3833425785268,16.6526695813103,0,0.985153801009636,0.215627574859517,0.77005821767849,41.671518372484,6.50699269288109,10.8260433788877,18.0917566561097,8.29320377149112,0,0,0,12.269149171914,12.0040925054323,4.6115054028955,16.8456397839954,6.60187258549499,17.8203728988346,13.3541213091693,5.71797589482666,6.82222512167955,4.1389228517002,3.32112799267718,3.13427586520895,11.0342190374465,0.979005787313703,1.37257369524342,15.5076019592166,17.0414218646707,8.96511485548932,0.606255142892519,0,3.93107381328584,25.0588885896965,24.2469917795139,19.084886421449,16.0173936569626,14.3278029738677,9.49038134747284,2.96836132889982,5.24312958929029,7.81271591377759,7.30931688522901,3.11552657510173,5.81051892299796,47.4977636895075,3.60911646545913,1.19705285616665,19.0591983953247,9.46874073634929,15.6038053801715,0.902399225814824,5.31405826020462,0,0,6.86085587803692,0,0.170093705276516,1.72732732881711,1.54227252690289,0.541892875087706,0,4.84264918785573,1.66215201785745,0.447749509444357,0,0,8.71930425395723,3.28014645699706,8.13445986660758,87.2757368656208,2.83865340936865,4.86806049531469,0,0.650060246036521,17.6752322828576,5.89691381581944,11.8617435178276,12.2802939780904,9.37288692894808,43.6126194165191,14.6466860853371,10.5681017995965,7.03353081609225,1.81813406897076,2.30628080838127,3.44554323735377,0.30347334256665,0.464845549297286,0.31481234683064,0,1.23213432070436,2.12922412126809,0.869932992075073,3.15051172476664,1.43124886741991,16.3749682518254,11.0732798651554,13.9160041564392,0.255897791311334,11.1264136888819,3.18203247925937,1.56989728039846,20.8652050796645,28.2773140628136,16.7293611330875,0.404364963146632,4.75530963519025,1.26377536871694,1.95053495635836,6.33655073041339,0,9.41849388715102,14.4233540592787,2.26016233240486,0,6.6343897524122,5.26141062304515,2.31510213706675,11.1502107847928,3.24656603140326,3.0982349809975,0.563391205064483,5.73645408816206,4.61770492761669,6.4200789266625,11.7071151143297,4.43326034125095,21.0748731494337,0.379473173765715,3.84928192269481,1.25088746543166,2.01090682660736,0,83.7879826913335,0.43050537267123,0,1.7737206141467,12.4050636111758,7.61171413848254,7.64637207142375,8.54470780761244,10.9586616710583,11.5181436464134,7.78167973431261,6.48037724685738,13.4831279970026,0,0,7.59624669541198,0,0,0,0,0,0,0,0,4.7735520279288,10.2705605564937,3.13359791546046,15.038068625404,0,1.4452926759333,10.8971841883166,11.4978484176388,28.5109436147285,38.7123363028657,47.1956587652998,42.0459837114009,8.79246429309181,0,0,0.270455678475983,0,0,21.7083026873535,54.2080263306008,0,0.222886768554957,0,1.19372242368845,9.79983446747707,0.921482106297696,17.8946576597934,20.8190736287559,17.4754666885962,0,0.211125408127993,20.3232948016091,16.8533188474,0,19.9423930879202,0,6.22079175323615,15.6370930996349,1.43216939740487,50.6456646524603,19.5313943161129,11.974154617347,0,9.69332746095218,16.6054895709714,5.98841394003583,0.7812832832557,0,37.6999779226093,1.365521379426,6.10208760702639,0,0,11.0809753085637,0,14.1718621730214,19.4160266186907,15.2581736317083,18.1349986287208,10.3441666633742,14.2600508150082,0,0,41.0144877825238,24.8393681746463,0.69169171316418,0.359030577639089,0,4.78501739597879,15.4799932849147,12.2597998484286,0,7.06411153777611,0.664846727600626,0.451191321234361,0.392125068635479,1.1747511088309,0,1.27149263184303,0,18.4453073219837,23.3232567866002,0.216388639742091,18.9099766904916,20.6990700937814,32.9956278264158,0,0,0,13.4802265961354,18.4592858878721,12.6502800691683,0,5.6742739490306,3.3989253134773,20.1238045453189,13.308978765353,9.48825561054519,30.3295582216742,3.15679180770434,3.42171031610916,1.32930774541437,1.65495977937749,0.627865836814451,0,10.8151627491321,3.18951747930219,0,0.0979923974143777,0,31.8002536200495,0,25.5436714603185,26.8237793706301,24.716752573016,16.6821108360081,0,16.2706133361983,0.137041924646751,4.37172145746577,17.3471580919108,10.3642232849446,5.29048213660123,29.8834192635094,5.19504984913539,14.6972225497188,0,1.02956998717179,4.17758914165634,0.372757606696298,0,41.8584954706731,47.0712808405499,9.79182889308689,0,15.0105072177447,13.2798217525233,5.10986352267889,8.16554338697919,0,22.0633097005081,21.0827590090749,3.58936512288407,1.39775300349294,2.14613024068285,5.57928643604681,10.0103374005222,1.44119953416961,29.1239873818635,127.943888066931,123.706203430131,137.435825918683,20.0792062290088,0,11.9284453471395,23.5631892573026,1.92903778158023,0.825236619583403,0.83088067605837,47.4694911173666,27.8568703640862,9.96292729191605,0,42.8703047707638,9.07464374735467,6.12481951812558,9.32294164530793,0,27.1584224021879,11.2555634962123,3.051222451857,15.203988849104,22.469758771233,23.8408772879869,0,0,12.4383255903358,9.06496732161006,49.9743116842261,6.62534444561107,10.0840705962009,15.7356796073801,2.73738940614927,6.34333520085005,32.0362237703084,11.1615056620763,42.6666227007611,24.3121350687856,0,0,0,70.7223144380316,54.1490171089032,82.7133057261346,102.952006042879,0,7.08854543973589,13.9109941988238,19.780167051627,13.7618206965617,21.2983778950756,13.1023410206319,0,3.37447101497688,4.09452617362449,3.14011866899464,0,0,0,10.2985813991943,19.8656313370141,7.21247619953397,11.1747773112303,15.8487778104122,4.44905610798268,4.34796129954155,13.1570903674018,4.81855321806619,3.54852359975121,4.61960624774737,16.6427151500534,6.36578123192664,24.0529600547696,10.8995102968778,13.5653716071051,11.1190630657942,6.85449381903832,10.1717683301165,13.4568007809894,3.43713782535963,7.88857391793439,11.9428766609585,13.2009162338841,15.1094110280429,17.5109734158278,0,1.73357847366573,2.78774068787403,0,0.680117776536817,2.31522474323834,1.95789363605174,0,0,0,0,0,0.168942440653073,0,0,2.12701969324168,13.5493267428696,79.5030060064705,63.3765288294742,57.2478879895455,8.19024622116032,7.12741435385786,0.422624246717254,0,26.8863158829235,0,2.83757976783418,3.68211900503681,0.139879507719444,0,1.79052119825112,0.215649622793364,0.786329709279482,0.218419276384028,15.9548578156784,0,13.7568698327492,2.23457967189298,7.63210441568205,0,0,2.46873160583479,40.7306484879756,12.717386569099,15.5866233958143,12.7707087245721,15.1786109538159,12.3515131148642,2.83544735103293,15.3401863350259,9.99385941814081,0,0.11796972334774,0,0,7.62764190934334,0.690359926060101,9.34906243946491,44.2236730693633,6.85797233591968,7.81514011233093,0,1.14640342257068,3.54854606920909,9.65787460043044,9.37293718336617,13.434641772577,8.30747113540179,13.6743702254555,9.86863980342928,21.8332918491289,0.175871244359621,0.511049710558381,3.21421101526972,10.0885116665647,6.06965604236632,6.37454135783633,17.0308550712267,0.115233987555779,112.153158172072,12.506430867737,6.37995903559636,0,9.78836336650208,32.5746335329633,13.6690563226922,19.899323595279,19.1763331306994,15.1149313853035,10.9882888214022,14.7956446445679,0,1.16241425368125,14.0825200565089,8.81882501203278,0.414432328326074,0,0,6.02318302348389,0.473328002922261,0.255640214277473,26.2499971118376,3.6657098967048,2.17144469965024,0.955538938977433,62.9746081021571,0.785201868921944,72.7850012144148,1.29485767437579,7.39172209364979,11.598144313382,18.9427287293064,0.467878926924211,0,0.118920090777569,0,1.09940516745429,0.754814217833368,14.2772192499698,19.0146817638443,0,17.4055308445273,4.47785439493089,26.6979515276326,24.060758426494,19.8648191964198,5.09781344063451,22.6501242331447,8.83073065238007,0,0,0,5.13544746810677,5.84269110597214,15.1380663523498,22.0742958053235,0,4.1474809016458,12.2178193295306,15.3417783749466,4.83593523616777,11.092215087154,7.7872781182282,15.5184702547147,1.63898357945543,20.018363159807,2.54972074354954,0,2.94063678511504,0,23.1882816547813,3.7514978221865,12.4375415918817,22.9621250813407,20.6836962443951,11.903221573187,1.42095601639213,5.21427600085206,8.52202155612662,9.86530953311556,10.105859447911,12.4098546301268,13.347098742326,9.09252715696932,24.600716449688,19.2943006796688,13.5943458580327,0,0,14.2822071349473,18.7712753922763,17.9694922948814,26.0413554122073,15.9781625804523,13.6866179641898,1.28227396921293 | |||
|short_description=p1@HNMT | |||
}} |
Latest revision as of 03:56, 17 September 2015
Short description: | p1@HNMT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HNMT_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000280096, ENST00000467390, ENST00000475675_5end |
EntrezGene: | HNMT |
HGNC: | 5028 |
UniProt: | Q9BRW6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 2.32e-31 | 61 |
monopoietic cell | 2.87e-30 | 59 |
monocyte | 2.87e-30 | 59 |
monoblast | 2.87e-30 | 59 |
promonocyte | 2.87e-30 | 59 |
defensive cell | 2.58e-26 | 48 |
phagocyte | 2.58e-26 | 48 |
granulocyte monocyte progenitor cell | 2.86e-25 | 67 |
myeloid lineage restricted progenitor cell | 1.61e-22 | 66 |
classical monocyte | 2.85e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.85e-22 | 42 |
myeloid leukocyte | 1.35e-20 | 72 |
myeloid cell | 7.29e-12 | 108 |
common myeloid progenitor | 7.29e-12 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.40e-21 | 76 |
bone element | 8.82e-19 | 82 |
hematopoietic system | 2.39e-17 | 98 |
blood island | 2.39e-17 | 98 |
skeletal element | 3.33e-17 | 90 |
adult organism | 1.18e-16 | 114 |
skeletal system | 2.76e-16 | 100 |
embryonic structure | 1.06e-15 | 564 |
germ layer | 1.06e-15 | 560 |
germ layer / neural crest | 1.06e-15 | 560 |
embryonic tissue | 1.06e-15 | 560 |
presumptive structure | 1.06e-15 | 560 |
germ layer / neural crest derived structure | 1.06e-15 | 560 |
epiblast (generic) | 1.06e-15 | 560 |
immune system | 1.87e-15 | 93 |
developing anatomical structure | 8.97e-15 | 581 |
hemolymphoid system | 1.20e-14 | 108 |
embryo | 3.39e-14 | 592 |
musculoskeletal system | 9.15e-13 | 167 |
mesoderm | 6.03e-10 | 315 |
mesoderm-derived structure | 6.03e-10 | 315 |
presumptive mesoderm | 6.03e-10 | 315 |
tissue | 6.66e-08 | 773 |
organ system subdivision | 2.34e-07 | 223 |