FFCP PHASE1:Hg19::chrM:10902..10945,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrM:10902..10945,+
|short_description=p2@uc004cov.3
|description=CAGE_peak_2_at_uc004cov.3_5end
|association_with_transcript=323bp_to_uc004cov.3_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=323bp_to_uc004cov.3_5end | |||
|cluster_id=chrM:10902..10945,+ | |||
|coexpression_cluster_id=C180 | |||
|description=CAGE_peak_2_at_uc004cov.3_5end | |||
|id=chrM:10902..10945,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.80e-08;82 | |||
|ontology_enrichment_disease=DOID:14566!2.04e-22!239;DOID:162!1.57e-21!235;DOID:0050687!1.00e-11!143;DOID:0050686!3.06e-10!137;DOID:305!2.33e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,2.04e-22,239;DOID:162,1.57e-21,235;DOID:0050687,1.00e-11,143;DOID:0050686,3.06e-10,137;DOID:305,2.33e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.10e-20!115;UBERON:0001049!1.46e-17!57;UBERON:0005068!1.46e-17!57;UBERON:0006241!1.46e-17!57;UBERON:0007135!1.46e-17!57;UBERON:0002780!7.48e-15!41;UBERON:0001890!7.48e-15!41;UBERON:0006240!7.48e-15!41;UBERON:0003080!1.68e-14!42;UBERON:0001017!3.05e-14!82;UBERON:0000955!5.69e-14!69;UBERON:0006238!5.69e-14!69;UBERON:0000073!2.02e-13!94;UBERON:0001016!2.02e-13!94;UBERON:0002616!5.00e-13!59;UBERON:0005743!5.26e-13!86;UBERON:0002020!1.66e-12!34;UBERON:0003528!1.66e-12!34;UBERON:0001893!9.87e-12!34;UBERON:0002791!1.68e-11!33;UBERON:0002346!3.11e-11!90;UBERON:0001869!4.80e-11!32;UBERON:0003075!1.70e-10!86;UBERON:0007284!1.70e-10!86;UBERON:0002619!1.51e-09!22;UBERON:0001950!2.16e-08!20;UBERON:0000956!4.02e-08!25;UBERON:0000203!4.02e-08!25;UBERON:0000924!9.11e-08!173;UBERON:0006601!9.11e-08!173;UBERON:0003056!1.08e-07!61;UBERON:0004121!3.38e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;7.73e-11;34!UBERON:0002020;7.73e-11;34!UBERON:0002780;8.16e-11;41!UBERON:0001890;8.16e-11;41!UBERON:0002791;3.34e-10;32!UBERON:0001893;4.63e-10;34!UBERON:0001869;6.10e-10;32!UBERON:0000073;6.52e-10;53!UBERON:0002616;6.52e-10;53!UBERON:0002619;1.49e-09;22!UBERON:0001950;2.13e-08;20!UBERON:0000956;4.00e-08;25!UBERON:0000203;4.00e-08;25!UBERON:0000955;2.74e-07;68!UBERON:0001017;8.59e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.07e-20,114;UBERON:0001049,7.02e-18,56;UBERON:0005068,7.02e-18,56;UBERON:0006241,7.02e-18,56;UBERON:0007135,7.02e-18,56;UBERON:0000073,1.77e-16,53;UBERON:0002616,1.77e-16,53;UBERON:0002780,7.48e-15,41;UBERON:0001890,7.48e-15,41;UBERON:0003080,7.48e-15,41;UBERON:0006240,7.48e-15,41;UBERON:0001016,9.10e-15,89;UBERON:0001017,2.01e-14,81;UBERON:0000955,3.52e-14,68;UBERON:0006238,3.52e-14,68;UBERON:0003528,1.66e-12,34;UBERON:0002020,1.66e-12,34;UBERON:0002346,3.63e-12,86;UBERON:0001893,9.87e-12,34;UBERON:0003075,2.07e-11,82;UBERON:0007284,2.07e-11,82;UBERON:0002791,2.43e-11,32;UBERON:0001869,4.80e-11,32;UBERON:0011216,3.87e-10,223;UBERON:0002619,1.51e-09,22;UBERON:0010371,5.72e-09,104;UBERON:0001950,2.16e-08,20;UBERON:0003056,3.88e-08,61;UBERON:0000956,4.02e-08,25;UBERON:0000203,4.02e-08,25;UBERON:0004121,5.80e-08,171;UBERON:0000924,5.80e-08,171;UBERON:0006601,5.80e-08,171 | |||
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14,317.683375872504 | ||
|short_description=p2@uc004cov.3 | |||
}} | }} |
Latest revision as of 03:53, 1 August 2015
Short description: | p2@uc004cov.3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_uc004cov.3_5end |
Coexpression cluster: | C180_skeletal_heart_Hepatocyte_acute_occipital_hippocampus_middle |
Association with transcript: | 323bp_to_uc004cov.3_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 7.07e-20 | 114 |
neural tube | 7.02e-18 | 56 |
neural rod | 7.02e-18 | 56 |
future spinal cord | 7.02e-18 | 56 |
neural keel | 7.02e-18 | 56 |
regional part of nervous system | 1.77e-16 | 53 |
regional part of brain | 1.77e-16 | 53 |
regional part of forebrain | 7.48e-15 | 41 |
forebrain | 7.48e-15 | 41 |
anterior neural tube | 7.48e-15 | 41 |
future forebrain | 7.48e-15 | 41 |
nervous system | 9.10e-15 | 89 |
central nervous system | 2.01e-14 | 81 |
brain | 3.52e-14 | 68 |
future brain | 3.52e-14 | 68 |
brain grey matter | 1.66e-12 | 34 |
gray matter | 1.66e-12 | 34 |
neurectoderm | 3.63e-12 | 86 |
telencephalon | 9.87e-12 | 34 |
neural plate | 2.07e-11 | 82 |
presumptive neural plate | 2.07e-11 | 82 |
regional part of telencephalon | 2.43e-11 | 32 |
cerebral hemisphere | 4.80e-11 | 32 |
organ system subdivision | 3.87e-10 | 223 |
regional part of cerebral cortex | 1.51e-09 | 22 |
ecto-epithelium | 5.72e-09 | 104 |
neocortex | 2.16e-08 | 20 |
pre-chordal neural plate | 3.88e-08 | 61 |
cerebral cortex | 4.02e-08 | 25 |
pallium | 4.02e-08 | 25 |
ectoderm-derived structure | 5.80e-08 | 171 |
ectoderm | 5.80e-08 | 171 |
presumptive ectoderm | 5.80e-08 | 171 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 2.04e-22 | 239 |
cancer | 1.57e-21 | 235 |
cell type cancer | 1.00e-11 | 143 |
organ system cancer | 3.06e-10 | 137 |
carcinoma | 2.33e-08 | 106 |