FFCP PHASE1:Hg19::chrX:153979315..153979373,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:153979315..153979373,-
|short_description=p1@GAB3
|description=CAGE_peak_1_at_GAB3_5end
|association_with_transcript=0bp_to_ENST00000369568,ENST00000369575...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=139716 | |EntrezGene=139716 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17515 | |HGNC=17515 | ||
|TSSclassifier=strong | |||
|UniProt=A6NHF8,Q8WWW8,E9PB44 | |UniProt=A6NHF8,Q8WWW8,E9PB44 | ||
|association_with_transcript=0bp_to_ENST00000369568,ENST00000369575,ENST00000424127,NM_001081573,NM_080612,uc004fmj.1,uc004fmk.1,uc010nve.1_5end | |||
|cluster_id=chrX:153979315..153979373,- | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_1_at_GAB3_5end | |||
|id=chrX:153979315..153979373,- | |||
|ontology_enrichment_celltype=CL:0000037!4.10e-50!172;CL:0000566!4.10e-50!172;CL:0002032!1.14e-46!165;CL:0000837!1.14e-46!165;CL:0000988!4.67e-46!182;CL:0000763!5.11e-43!112;CL:0000049!5.11e-43!112;CL:0000738!3.40e-39!140;CL:0000766!1.07e-33!76;CL:0002031!1.41e-32!124;CL:0000557!3.87e-30!71;CL:0002087!1.18e-29!119;CL:0000839!1.49e-29!70;CL:0002009!3.64e-26!65;CL:0002194!1.31e-25!63;CL:0000576!1.31e-25!63;CL:0000040!1.31e-25!63;CL:0000559!1.31e-25!63;CL:0002057!2.55e-24!42;CL:0000860!2.52e-20!45;CL:0000134!7.98e-13!358;CL:0002320!8.85e-12!365;CL:0000048!2.94e-10!430;CL:0000034!4.52e-09!444;CL:0000723!5.82e-09!436;CL:0000791!2.00e-08!18;CL:0000789!2.00e-08!18;CL:0002420!2.00e-08!18;CL:0002419!2.00e-08!18;CL:0000790!2.00e-08!18;CL:0000084!4.53e-08!25;CL:0000827!4.53e-08!25;CL:0000625!2.40e-07!11;CL:0000219!3.60e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.73e-20;33!CL:0002057;2.73e-20;33!CL:0000473;1.80e-19;39!CL:0000234;1.80e-19;39!CL:0000576;1.82e-18;48!CL:0000766;1.77e-17;69!CL:0000763;3.82e-15;100!CL:0002087;8.33e-11;104!CL:0000738;3.72e-10;136!CL:0000988;7.45e-10;177!CL:0000791;4.01e-09;18!CL:0000789;4.01e-09;18!CL:0002419;4.01e-09;18!CL:0000084;6.91e-09;25!CL:0000625;5.49e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,8.26e-58,168;CL:0002032,5.99e-54,161;CL:0000837,5.99e-54,161;CL:0000988,6.51e-54,177;CL:0000763,7.40e-51,108;CL:0000049,7.40e-51,108;CL:0000738,1.12e-45,136;CL:0000766,5.55e-41,72;CL:0002031,3.00e-38,120;CL:0000557,6.31e-37,67;CL:0000839,2.91e-36,66;CL:0002087,6.33e-35,115;CL:0002009,2.17e-32,61;CL:0002194,8.35e-32,59;CL:0000576,8.35e-32,59;CL:0000040,8.35e-32,59;CL:0000559,8.35e-32,59;CL:0000473,8.60e-30,48;CL:0000234,8.60e-30,48;CL:0000860,9.76e-27,42;CL:0002057,9.76e-27,42;CL:0000134,1.75e-12,354;CL:0002320,2.46e-11,361;CL:0000791,3.73e-09,18;CL:0000789,3.73e-09,18;CL:0002420,3.73e-09,18;CL:0002419,3.73e-09,18;CL:0000790,3.73e-09,18;CL:0000084,5.36e-09,25;CL:0000827,5.36e-09,25;CL:0000048,3.41e-08,427;CL:0000625,5.82e-08,11;CL:0000723,2.77e-07,433;CL:0000034,3.20e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.91e-19;42!CL:0000049;8.10e-14;108!CL:0000790;4.01e-09;18 | |||
|ontology_enrichment_disease=DOID:1240!2.05e-08!39;DOID:8692!4.31e-08!31;DOID:2531!2.04e-07!51;DOID:0060083!2.04e-07!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;2.48e-08;31!DOID:1240;3.58e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,2.45e-09,39;DOID:8692,8.74e-09,31;DOID:2531,4.48e-08,51;DOID:0060083,4.48e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0002193!7.26e-39!112;UBERON:0002390!6.27e-37!102;UBERON:0003061!6.27e-37!102;UBERON:0002371!6.94e-27!80;UBERON:0002405!5.35e-25!115;UBERON:0001474!6.50e-25!86;UBERON:0003081!8.92e-19!216;UBERON:0004765!5.31e-18!101;UBERON:0001434!5.31e-18!101;UBERON:0007023!1.37e-16!115;UBERON:0002384!3.20e-11!375;UBERON:0002204!1.21e-10!167;UBERON:0000178!5.98e-08!15;UBERON:0000179!5.98e-08!15;UBERON:0000463!5.98e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.26e-08;15!UBERON:0000179;1.26e-08;15!UBERON:0000463;1.26e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.86e-45,108;UBERON:0002390,4.04e-43,98;UBERON:0003061,4.04e-43,98;UBERON:0002405,2.71e-37,93;UBERON:0002371,6.98e-32,76;UBERON:0001474,1.10e-29,82;UBERON:0003081,3.14e-25,203;UBERON:0004765,2.46e-24,90;UBERON:0001434,9.63e-19,100;UBERON:0007023,9.03e-17,114;UBERON:0002384,7.70e-11,371;UBERON:0000926,2.73e-09,315;UBERON:0004120,2.73e-09,315;UBERON:0006603,2.73e-09,315;UBERON:0002204,9.57e-09,167;UBERON:0000178,1.26e-08,15;UBERON:0000179,1.26e-08,15;UBERON:0000463,1.26e-08,15 | |||
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| ||
|short_description=p1@GAB3 | |||
}} | }} |
Latest revision as of 04:16, 20 September 2015
Short description: | p1@GAB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GAB3_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000369568, ENST00000369575, ENST00000424127, NM_001081573, NM_080612, uc004fmj.1, uc004fmk.1, uc010nve.1_5end |
EntrezGene: | GAB3 |
HGNC: | 17515 |
UniProt: | A6NHF8Q8WWW8E9PB44 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.86e-45 | 108 |
hematopoietic system | 4.04e-43 | 98 |
blood island | 4.04e-43 | 98 |
immune system | 2.71e-37 | 93 |
bone marrow | 6.98e-32 | 76 |
bone element | 1.10e-29 | 82 |
lateral plate mesoderm | 3.14e-25 | 203 |
skeletal element | 2.46e-24 | 90 |
skeletal system | 9.63e-19 | 100 |
adult organism | 9.03e-17 | 114 |
connective tissue | 7.70e-11 | 371 |
mesoderm | 2.73e-09 | 315 |
mesoderm-derived structure | 2.73e-09 | 315 |
presumptive mesoderm | 2.73e-09 | 315 |
musculoskeletal system | 9.57e-09 | 167 |
blood | 1.26e-08 | 15 |
haemolymphatic fluid | 1.26e-08 | 15 |
organism substance | 1.26e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
leukemia | 2.45e-09 | 39 |
myeloid leukemia | 8.74e-09 | 31 |
hematologic cancer | 4.48e-08 | 51 |
immune system cancer | 4.48e-08 | 51 |