FFCP PHASE1:Hg19::chr6:160114293..160114305,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6648 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11180 | |||
|TSSclassifier=strong | |||
|UniProt=P04179 | |||
|association_with_transcript=4bp_to_ENST00000337404_5end | |||
|cluster_id=chr6:160114293..160114305,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_2_at_SOD2_5end | |||
|id=chr6:160114293..160114305,- | |||
|ontology_enrichment_celltype=CL:0000766!8.64e-26!76;CL:0002057!1.62e-25!42;CL:0000860!1.55e-24!45;CL:0002194!9.41e-24!63;CL:0000576!9.41e-24!63;CL:0000040!9.41e-24!63;CL:0000559!9.41e-24!63;CL:0002009!9.18e-23!65;CL:0000839!4.58e-21!70;CL:0000557!1.68e-20!71;CL:0000763!2.28e-17!112;CL:0000049!2.28e-17!112;CL:0000738!5.56e-14!140;CL:0002087!6.81e-13!119;CL:0000037!3.66e-12!172;CL:0000566!3.66e-12!172;CL:0002031!3.03e-11!124;CL:0002032!5.95e-11!165;CL:0000837!5.95e-11!165;CL:0000988!8.85e-09!182;CL:0000048!5.11e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.16e-19;33!CL:0002057;1.16e-19;33!CL:0000473;5.36e-19;39!CL:0000234;5.36e-19;39!CL:0000576;2.34e-15;48!CL:0000766;2.44e-12;69!CL:0000763;6.93e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.63e-28,48;CL:0000234,1.63e-28,48;CL:0000766,3.07e-26,72;CL:0000860,1.62e-25,42;CL:0002057,1.62e-25,42;CL:0002194,2.53e-24,59;CL:0000576,2.53e-24,59;CL:0000040,2.53e-24,59;CL:0000559,2.53e-24,59;CL:0002009,2.94e-23,61;CL:0000839,2.00e-21,66;CL:0000557,7.90e-21,67;CL:0000763,2.31e-17,108;CL:0000049,2.31e-17,108;CL:0000738,7.11e-14,136;CL:0002087,8.23e-13,115;CL:0000037,5.15e-12,168;CL:0002031,3.87e-11,120;CL:0002032,8.33e-11,161;CL:0000837,8.33e-11,161;CL:0000988,6.02e-09,177;CL:0000048,3.45e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;1.26e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.77e-22!112;UBERON:0002390!7.73e-22!102;UBERON:0003061!7.73e-22!102;UBERON:0002371!6.91e-19!80;UBERON:0002405!4.17e-18!115;UBERON:0007023!4.72e-18!115;UBERON:0002204!8.78e-17!167;UBERON:0001474!1.24e-16!86;UBERON:0004765!3.20e-15!101;UBERON:0001434!3.20e-15!101;UBERON:0003081!1.82e-11!216;UBERON:0000926!9.23e-08!448;UBERON:0004120!9.23e-08!448;UBERON:0006603!9.23e-08!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.18e-22,108;UBERON:0002390,5.89e-22,98;UBERON:0003061,5.89e-22,98;UBERON:0002371,4.45e-19,76;UBERON:0002405,3.83e-18,93;UBERON:0007023,6.95e-18,114;UBERON:0002204,4.77e-17,167;UBERON:0001474,1.01e-16,82;UBERON:0004765,1.03e-16,90;UBERON:0001434,1.84e-15,100;UBERON:0003081,5.85e-12,203;UBERON:0000926,2.49e-10,315;UBERON:0004120,2.49e-10,315;UBERON:0006603,2.49e-10,315 | |||
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| |||
|short_description=p2@SOD2 | |||
}} |
Latest revision as of 14:47, 16 September 2015
Short description: | p2@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SOD2_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 4bp_to_ENST00000337404_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | P04179 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.63e-28 | 48 |
phagocyte | 1.63e-28 | 48 |
myeloid leukocyte | 3.07e-26 | 72 |
classical monocyte | 1.62e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.62e-25 | 42 |
monopoietic cell | 2.53e-24 | 59 |
monocyte | 2.53e-24 | 59 |
monoblast | 2.53e-24 | 59 |
promonocyte | 2.53e-24 | 59 |
macrophage dendritic cell progenitor | 2.94e-23 | 61 |
myeloid lineage restricted progenitor cell | 2.00e-21 | 66 |
granulocyte monocyte progenitor cell | 7.90e-21 | 67 |
myeloid cell | 2.31e-17 | 108 |
common myeloid progenitor | 2.31e-17 | 108 |
leukocyte | 7.11e-14 | 136 |
nongranular leukocyte | 8.23e-13 | 115 |
hematopoietic stem cell | 5.15e-12 | 168 |
hematopoietic lineage restricted progenitor cell | 3.87e-11 | 120 |
hematopoietic oligopotent progenitor cell | 8.33e-11 | 161 |
hematopoietic multipotent progenitor cell | 8.33e-11 | 161 |
hematopoietic cell | 6.02e-09 | 177 |
multi fate stem cell | 3.45e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 3.18e-22 | 108 |
hematopoietic system | 5.89e-22 | 98 |
blood island | 5.89e-22 | 98 |
bone marrow | 4.45e-19 | 76 |
immune system | 3.83e-18 | 93 |
adult organism | 6.95e-18 | 114 |
musculoskeletal system | 4.77e-17 | 167 |
bone element | 1.01e-16 | 82 |
skeletal element | 1.03e-16 | 90 |
skeletal system | 1.84e-15 | 100 |
lateral plate mesoderm | 5.85e-12 | 203 |
mesoderm | 2.49e-10 | 315 |
mesoderm-derived structure | 2.49e-10 | 315 |
presumptive mesoderm | 2.49e-10 | 315 |