FFCP PHASE1:Mm9::chr6:71657820..71657831,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=52250|HGNC=|MCL_coexpression_id=13|UniProt=Q8BGH4|association_with_transcript=-22bp_to_uc009chc.1_5end|description=CAGE_peak_3_at_Reep1_5end|id=chr6:71657820..71657831,+|ontology_enrichment_celltype=CL:0000117!6.17e-16!23;CL:0000337!6.17e-16!23;CL:0000540!9.72e-14!33;CL:0000047!9.72e-14!33;CL:0000031!9.72e-14!33;CL:0000404!9.72e-14!33;CL:0002319!1.05e-11!43;CL:0000221!1.15e-11!44;CL:0000133!1.15e-11!44;CL:0000393!1.21e-09!39;CL:0000211!1.21e-09!39;CL:0000055!4.91e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,4.80e-21,23;CL:0000337,4.80e-21,23;CL:0000540,2.23e-15,33;CL:0000047,2.23e-15,33;CL:0000031,2.23e-15,33;CL:0000404,2.23e-15,33;CL:0002319,2.18e-12,43;CL:0000393,3.41e-12,39;CL:0000211,3.41e-12,39;CL:0000221,7.66e-12,44;CL:0000133,7.66e-12,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!6.28e-24!75;UBERON:0001016!6.28e-24!75;UBERON:0001017!8.19e-24!73;UBERON:0005743!8.19e-24!73;UBERON:0001049!2.66e-20!52;UBERON:0005068!2.66e-20!52;UBERON:0006241!2.66e-20!52;UBERON:0007135!2.66e-20!52;UBERON:0002346!8.39e-20!71;UBERON:0003075!8.39e-20!71;UBERON:0007284!8.39e-20!71;UBERON:0002020!3.79e-19!34;UBERON:0000955!1.71e-18!50;UBERON:0006238!1.71e-18!50;UBERON:0004121!1.73e-18!102;UBERON:0000924!1.73e-18!102;UBERON:0006601!1.73e-18!102;UBERON:0002616!5.23e-18!49;UBERON:0000033!4.52e-17!63;UBERON:0003056!1.42e-15!49;UBERON:0002791!1.42e-15!29;UBERON:0003528!1.42e-15!29;UBERON:0001893!1.42e-15!29;UBERON:0003080!1.70e-15!40;UBERON:0002780!4.93e-15!39;UBERON:0001890!4.93e-15!39;UBERON:0006240!4.93e-15!39;UBERON:0000956!1.38e-10!21;UBERON:0001869!1.38e-10!21;UBERON:0000203!1.38e-10!21;UBERON:0002619!2.68e-08!17;UBERON:0000025!1.38e-07!114;UBERON:0007811!1.39e-07!86;UBERON:0000153!1.75e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.52e-26,73;UBERON:0001016,3.42e-26,75;UBERON:0000073,2.30e-25,54;UBERON:0002020,1.18e-24,34;UBERON:0001049,1.03e-23,52;UBERON:0005068,1.03e-23,52;UBERON:0006241,1.03e-23,52;UBERON:0007135,1.03e-23,52;UBERON:0002346,4.05e-23,64;UBERON:0003075,4.05e-23,64;UBERON:0007284,4.05e-23,64;UBERON:0003528,7.84e-20,29;UBERON:0002791,7.84e-20,29;UBERON:0001893,7.84e-20,29;UBERON:0004121,9.82e-20,95;UBERON:0000924,9.82e-20,95;UBERON:0006601,9.82e-20,95;UBERON:0000955,4.59e-19,47;UBERON:0006238,4.59e-19,47;UBERON:0002616,1.92e-18,46;UBERON:0010371,7.42e-18,73;UBERON:0003080,1.62e-17,40;UBERON:0002780,6.56e-17,39;UBERON:0001890,6.56e-17,39;UBERON:0006240,6.56e-17,39;UBERON:0003056,4.14e-16,49;UBERON:0010314,7.53e-14,92;UBERON:0000956,4.06e-13,21;UBERON:0001869,4.06e-13,21;UBERON:0000203,4.06e-13,21;UBERON:0002619,4.72e-10,17;UBERON:0002021,1.94e-08,10;UBERON:0000411,1.94e-08,10;UBERON:0001950,1.94e-08,10;UBERON:0002420,4.94e-08,8;UBERON:0007245,4.94e-08,8;UBERON:0010009,4.94e-08,8;UBERON:0010011,4.94e-08,8;UBERON:0000454,4.94e-08,8;UBERON:0003076,7.99e-07,12;UBERON:0003057,7.99e-07,12;UBERON:0002240,8.93e-07,6;UBERON:0005174,8.93e-07,6;UBERON:0001137,8.93e-07,6|phase1_expression=0.960893082628764,0.697950815278722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7008658030214,0.0992909512008853,0,0.799962113967033,0.68822784320151,0,0.430761996159075,0,0,0,0,0.635030673459631,0.61506478758457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65407546914134,0.439372365468944,0.194429899074283,0,1.43752564364972,0,0,0,0,0,1.54701627683233,14.566785181891,8.46385566835253,12.0427966666174,0.677689064138264,0,0,0,0,1.79760066311043,1.15265491596466,7.98410014775278,6.48028503992115,4.41682418837902,9.99778445413313,9.93908434282261,6.61450315760752,3.83381884072945,13.7882817991503,4.40463523997555,6.76742891851495,4.76180253094355,13.7161739239402,17.9315781460723,10.939180781692,4.4669279840221,4.50210088025344,5.19514042441154,12.9636577608414,9.25415925194169,14.7255562201987,0.605809546665472,1.43585964202892,0.289864488701678,0,0,0,0,0,0.421333260395256,0,0,0,0.704217098883403,0,0,0,0,0,0,0.22836775943812,0.517875767294343,0,1.04091196059682,0.304465478312141,0.691846491768175,0.60289056221049,1.05829836422134,0.502666365318702,0,0,0,2.10296904931632,0.220841518460394,0.484875253135222,0,2.34224637609238,2.09446706813455,0,0,0,0.127070227073065,2.84602214869163,4.11750542536764,9.29842205635197,5.04090528557602,2.81287003063364,4.36354893575076,3.40706652442291,1.73126918545538,0.124406970610093,0.505445516867349,0.210441855886474,0.260240885925407,0.919608417733892,1.80062129805349,0.90422890701429,1.63287597963187,1.2811372028485,1.12442069471675,1.55222022443409,0.215567992932842,1.13463648100692,0.527853372491847,0.876782929710299,0,1.74126083261083,0.61734640922383,1.39323986772945,0,0,0,1.24275463521301,0.938104239924385,1.62055855314913,0.710234206755631,0.590292695242212,0.771335564436891,0.697601834251224,0.536546802799238,0.700592054203017,0.987359099480883,0.32833492815819,0.405344047729279,0.438599962275997,1.3173006917463,0.805238512562231,2.73376933133365,6.07137213037778,0,0,0.639864751605702,0.928946687441754,1.9330119198314,0.605050573870028,0.667134131534611,0.190225626112559,0.474529061544512,0.164698954724011,0.251335208800269,0.397912944082302,0.19496408711912,0,0.216138049874694,0,0.189667900953082,0.571242563048644,1.1270773567308,0,0.193952487167626,0.280543279561274,0.632365371242573,0,0,0,0,0.83422552858047,0.196558995113203,0.224862112384854,0,0,0,0.287696137450811,0.162135226775035,0.274561413188081,0,0.372140947668503,0.936113019343682,0,0.179397413521912,0,0.369506380333209,0.37898282354097,0.977789858652155,0,0.938760993154008,0.335012514883631,0.476087281772027,1.75620283072019,0.630540576424764,1.10732344824387,0.956728611944923,0.163863314715738,0.518054945597687,0.144649058581512,0,0,0,0,3.37156238974363,5.74337264301796,0,1.51482556322624,1.26203287766503,1.95219372148319,1.07711698866399,1.43381278771531,0.891194696329576,0.283076530788832,0.404810701674894,0,0.790575555893047,2.89189184779626,0.141940085208269,0.890328018336276,1.46598263418218,0.329940245945071,0,0,0,0.377210159511796,0.295301892880773,0,0,0,0.356497378384721,0,0,0,0,0.720244376125241,1.03486947026204,1.07168517515796,0.709360934569094,0.535106452806212,1.31639216481697,0.913394847343798,0.23467170806371,0.21183207086382,0,0,0.645857706783622,0.361877549568935,0.238744688006273,0.164140899745061,0,4.45020724825223,0,0.412773735926445,0.185194527369712,0,0,0,0,0.139951452323658,0,0,0.790839983952838,1.01659733563424,0.216010681643603,0.418176592028937,0,0.134864346384821,0.41326727862668,0.26175594198403,0,0,0.56369293868419,2.54178128274764,1.98550188548517,1.36115831840833,2.71235629303235,2.02747350588934,3.28600268208111,3.6457227756306,3.67007705489988,5.79801889982414,3.16833006883652,0,0.202725215290164,0,0.25984164595559,0.179026695667481,0,0.360586348559907,0.147689527174577,0.403865799792591,0.304827226619999,0.201652370273681,0.194915761479505,0,0.350630706544707,0,0,0.0897138566094757,0.335769232728157,0.386379188064381,0.187682475451182,0,0,0.501572104035363,7.90652579663893,3.22227665555024,6.87474616127276,6.35856774671644,5.48066015816514,2.2661816921691,8.77529250301348,4.95353323546643,3.62513927187364,2.5888015587591,1.14166082342594,1.99512436700516,1.53660245178721,3.16038732188782,1.46729213839588,1.2869045591501,2.66696073361938,2.06035057238894,1.92551525755089,1.76888048234658,1.01391719956096,1.88626341386076,1.87283014939765,2.04880487695582,2.41228969613576,2.38146845641537,2.54945517078682,1.92909220463705,1.23625770240992,1.76638704161277,1.37147700954166,1.59728225543404,2.62279808942053,0.872078499793971,1.88218760830661,2.19997980518359,2.37806364734604,2.89376682581627,1.62964936615034,2.24456908663095,2.72860541685601,1.87158516513571,2.45538625901814,2.63392630016142,1.73615949883027,1.99848462350357,1.16965804222704,1.71896843238639,0.956441660344217,1.10295709559758,0.927471342481686|short_description=p3@Reep1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=52250 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BGH4 | |||
|association_with_transcript=-22bp_to_uc009chc.1_5end | |||
|cluster_id=chr6:71657820..71657831,+ | |||
|description=CAGE_peak_3_at_Reep1_5end | |||
|id=chr6:71657820..71657831,+ | |||
|ontology_enrichment_celltype=CL:0000117!6.17e-16!23;CL:0000337!6.17e-16!23;CL:0000540!9.72e-14!33;CL:0000047!9.72e-14!33;CL:0000031!9.72e-14!33;CL:0000404!9.72e-14!33;CL:0002319!1.05e-11!43;CL:0000221!1.15e-11!44;CL:0000133!1.15e-11!44;CL:0000393!1.21e-09!39;CL:0000211!1.21e-09!39;CL:0000055!4.91e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.80e-21,23;CL:0000337,4.80e-21,23;CL:0000540,2.23e-15,33;CL:0000047,2.23e-15,33;CL:0000031,2.23e-15,33;CL:0000404,2.23e-15,33;CL:0002319,2.18e-12,43;CL:0000393,3.41e-12,39;CL:0000211,3.41e-12,39;CL:0000221,7.66e-12,44;CL:0000133,7.66e-12,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.28e-24!75;UBERON:0001016!6.28e-24!75;UBERON:0001017!8.19e-24!73;UBERON:0005743!8.19e-24!73;UBERON:0001049!2.66e-20!52;UBERON:0005068!2.66e-20!52;UBERON:0006241!2.66e-20!52;UBERON:0007135!2.66e-20!52;UBERON:0002346!8.39e-20!71;UBERON:0003075!8.39e-20!71;UBERON:0007284!8.39e-20!71;UBERON:0002020!3.79e-19!34;UBERON:0000955!1.71e-18!50;UBERON:0006238!1.71e-18!50;UBERON:0004121!1.73e-18!102;UBERON:0000924!1.73e-18!102;UBERON:0006601!1.73e-18!102;UBERON:0002616!5.23e-18!49;UBERON:0000033!4.52e-17!63;UBERON:0003056!1.42e-15!49;UBERON:0002791!1.42e-15!29;UBERON:0003528!1.42e-15!29;UBERON:0001893!1.42e-15!29;UBERON:0003080!1.70e-15!40;UBERON:0002780!4.93e-15!39;UBERON:0001890!4.93e-15!39;UBERON:0006240!4.93e-15!39;UBERON:0000956!1.38e-10!21;UBERON:0001869!1.38e-10!21;UBERON:0000203!1.38e-10!21;UBERON:0002619!2.68e-08!17;UBERON:0000025!1.38e-07!114;UBERON:0007811!1.39e-07!86;UBERON:0000153!1.75e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.52e-26,73;UBERON:0001016,3.42e-26,75;UBERON:0000073,2.30e-25,54;UBERON:0002020,1.18e-24,34;UBERON:0001049,1.03e-23,52;UBERON:0005068,1.03e-23,52;UBERON:0006241,1.03e-23,52;UBERON:0007135,1.03e-23,52;UBERON:0002346,4.05e-23,64;UBERON:0003075,4.05e-23,64;UBERON:0007284,4.05e-23,64;UBERON:0003528,7.84e-20,29;UBERON:0002791,7.84e-20,29;UBERON:0001893,7.84e-20,29;UBERON:0004121,9.82e-20,95;UBERON:0000924,9.82e-20,95;UBERON:0006601,9.82e-20,95;UBERON:0000955,4.59e-19,47;UBERON:0006238,4.59e-19,47;UBERON:0002616,1.92e-18,46;UBERON:0010371,7.42e-18,73;UBERON:0003080,1.62e-17,40;UBERON:0002780,6.56e-17,39;UBERON:0001890,6.56e-17,39;UBERON:0006240,6.56e-17,39;UBERON:0003056,4.14e-16,49;UBERON:0010314,7.53e-14,92;UBERON:0000956,4.06e-13,21;UBERON:0001869,4.06e-13,21;UBERON:0000203,4.06e-13,21;UBERON:0002619,4.72e-10,17;UBERON:0002021,1.94e-08,10;UBERON:0000411,1.94e-08,10;UBERON:0001950,1.94e-08,10;UBERON:0002420,4.94e-08,8;UBERON:0007245,4.94e-08,8;UBERON:0010009,4.94e-08,8;UBERON:0010011,4.94e-08,8;UBERON:0000454,4.94e-08,8;UBERON:0003076,7.99e-07,12;UBERON:0003057,7.99e-07,12;UBERON:0002240,8.93e-07,6;UBERON:0005174,8.93e-07,6;UBERON:0001137,8.93e-07,6 | |||
|phase1_expression=0.960893082628764,0.697950815278722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7008658030214,0.0992909512008853,0,0.799962113967033,0.68822784320151,0,0.430761996159075,0,0,0,0,0.635030673459631,0.61506478758457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65407546914134,0.439372365468944,0.194429899074283,0,1.43752564364972,0,0,0,0,0,1.54701627683233,14.566785181891,8.46385566835253,12.0427966666174,0.677689064138264,0,0,0,0,1.79760066311043,1.15265491596466,7.98410014775278,6.48028503992115,4.41682418837902,9.99778445413313,9.93908434282261,6.61450315760752,3.83381884072945,13.7882817991503,4.40463523997555,6.76742891851495,4.76180253094355,13.7161739239402,17.9315781460723,10.939180781692,4.4669279840221,4.50210088025344,5.19514042441154,12.9636577608414,9.25415925194169,14.7255562201987,0.605809546665472,1.43585964202892,0.289864488701678,0,0,0,0,0,0.421333260395256,0,0,0,0.704217098883403,0,0,0,0,0,0,0.22836775943812,0.517875767294343,0,1.04091196059682,0.304465478312141,0.691846491768175,0.60289056221049,1.05829836422134,0.502666365318702,0,0,0,2.10296904931632,0.220841518460394,0.484875253135222,0,2.34224637609238,2.09446706813455,0,0,0,0.127070227073065,2.84602214869163,4.11750542536764,9.29842205635197,5.04090528557602,2.81287003063364,4.36354893575076,3.40706652442291,1.73126918545538,0.124406970610093,0.505445516867349,0.210441855886474,0.260240885925407,0.919608417733892,1.80062129805349,0.90422890701429,1.63287597963187,1.2811372028485,1.12442069471675,1.55222022443409,0.215567992932842,1.13463648100692,0.527853372491847,0.876782929710299,0,1.74126083261083,0.61734640922383,1.39323986772945,0,0,0,1.24275463521301,0.938104239924385,1.62055855314913,0.710234206755631,0.590292695242212,0.771335564436891,0.697601834251224,0.536546802799238,0.700592054203017,0.987359099480883,0.32833492815819,0.405344047729279,0.438599962275997,1.3173006917463,0.805238512562231,2.73376933133365,6.07137213037778,0,0,0.639864751605702,0.928946687441754,1.9330119198314,0.605050573870028,0.667134131534611,0.190225626112559,0.474529061544512,0.164698954724011,0.251335208800269,0.397912944082302,0.19496408711912,0,0.216138049874694,0,0.189667900953082,0.571242563048644,1.1270773567308,0,0.193952487167626,0.280543279561274,0.632365371242573,0,0,0,0,0.83422552858047,0.196558995113203,0.224862112384854,0,0,0,0.287696137450811,0.162135226775035,0.274561413188081,0,0.372140947668503,0.936113019343682,0,0.179397413521912,0,0.369506380333209,0.37898282354097,0.977789858652155,0,0.938760993154008,0.335012514883631,0.476087281772027,1.75620283072019,0.630540576424764,1.10732344824387,0.956728611944923,0.163863314715738,0.518054945597687,0.144649058581512,0,0,0,0,3.37156238974363,5.74337264301796,0,1.51482556322624,1.26203287766503,1.95219372148319,1.07711698866399,1.43381278771531,0.891194696329576,0.283076530788832,0.404810701674894,0,0.790575555893047,2.89189184779626,0.141940085208269,0.890328018336276,1.46598263418218,0.329940245945071,0,0,0,0.377210159511796,0.295301892880773,0,0,0,0.356497378384721,0,0,0,0,0.720244376125241,1.03486947026204,1.07168517515796,0.709360934569094,0.535106452806212,1.31639216481697,0.913394847343798,0.23467170806371,0.21183207086382,0,0,0.645857706783622,0.361877549568935,0.238744688006273,0.164140899745061,0,4.45020724825223,0,0.412773735926445,0.185194527369712,0,0,0,0,0.139951452323658,0,0,0.790839983952838,1.01659733563424,0.216010681643603,0.418176592028937,0,0.134864346384821,0.41326727862668,0.26175594198403,0,0,0.56369293868419,2.54178128274764,1.98550188548517,1.36115831840833,2.71235629303235,2.02747350588934,3.28600268208111,3.6457227756306,3.67007705489988,5.79801889982414,3.16833006883652,0,0.202725215290164,0,0.25984164595559,0.179026695667481,0,0.360586348559907,0.147689527174577,0.403865799792591,0.304827226619999,0.201652370273681,0.194915761479505,0,0.350630706544707,0,0,0.0897138566094757,0.335769232728157,0.386379188064381,0.187682475451182,0,0,0.501572104035363,7.90652579663893,3.22227665555024,6.87474616127276,6.35856774671644,5.48066015816514,2.2661816921691,8.77529250301348,4.95353323546643,3.62513927187364,2.5888015587591,1.14166082342594,1.99512436700516,1.53660245178721,3.16038732188782,1.46729213839588,1.2869045591501,2.66696073361938,2.06035057238894,1.92551525755089,1.76888048234658,1.01391719956096,1.88626341386076,1.87283014939765,2.04880487695582,2.41228969613576,2.38146845641537,2.54945517078682,1.92909220463705,1.23625770240992,1.76638704161277,1.37147700954166,1.59728225543404,2.62279808942053,0.872078499793971,1.88218760830661,2.19997980518359,2.37806364734604,2.89376682581627,1.62964936615034,2.24456908663095,2.72860541685601,1.87158516513571,2.45538625901814,2.63392630016142,1.73615949883027,1.99848462350357,1.16965804222704,1.71896843238639,0.956441660344217,1.10295709559758,0.927471342481686 | |||
|short_description=p3@Reep1 | |||
}} |
Latest revision as of 16:56, 1 October 2015
Short description: | p3@Reep1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Reep1_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -22bp_to_uc009chc.1_5end |
EntrezGene: | Reep1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.80e-21 | 23 |
neuroblast (sensu Vertebrata) | 4.80e-21 | 23 |
neuron | 2.23e-15 | 33 |
neuronal stem cell | 2.23e-15 | 33 |
neuroblast | 2.23e-15 | 33 |
electrically signaling cell | 2.23e-15 | 33 |
neural cell | 2.18e-12 | 43 |
electrically responsive cell | 3.41e-12 | 39 |
electrically active cell | 3.41e-12 | 39 |
ectodermal cell | 7.66e-12 | 44 |
neurectodermal cell | 7.66e-12 | 44 |