FFCP PHASE1:Mm9::chr6:71657855..71657872,+: Difference between revisions
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{{FFCP|EntrezGene=52250|HGNC=|MCL_coexpression_id=13|UniProt=Q8BGH4|association_with_transcript=1bp_to_uc009chc.1_5end|description=CAGE_peak_1_at_Reep1_5end|id=chr6:71657855..71657872,+|ontology_enrichment_celltype=CL:0000117!9.06e-15!23;CL:0000337!9.06e-15!23;CL:0000540!3.69e-13!33;CL:0000047!3.69e-13!33;CL:0000031!3.69e-13!33;CL:0000404!3.69e-13!33;CL:0002319!1.43e-09!43;CL:0000221!1.56e-09!44;CL:0000133!1.56e-09!44;CL:0000393!6.34e-09!39;CL:0000211!6.34e-09!39|ontology_enrichment_celltype_v019_2=CL:0000117,6.79e-15,23;CL:0000337,6.79e-15,23;CL:0000540,2.86e-13,33;CL:0000047,2.86e-13,33;CL:0000031,2.86e-13,33;CL:0000404,2.86e-13,33;CL:0002319,1.02e-09,43;CL:0000221,1.11e-09,44;CL:0000133,1.11e-09,44;CL:0000393,1.64e-08,39;CL:0000211,1.64e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.01e-20!73;UBERON:0005743!4.01e-20!73;UBERON:0000073!5.44e-20!75;UBERON:0001016!5.44e-20!75;UBERON:0002346!1.02e-17!71;UBERON:0003075!1.02e-17!71;UBERON:0007284!1.02e-17!71;UBERON:0004121!1.79e-17!102;UBERON:0000924!1.79e-17!102;UBERON:0006601!1.79e-17!102;UBERON:0001049!2.98e-17!52;UBERON:0005068!2.98e-17!52;UBERON:0006241!2.98e-17!52;UBERON:0007135!2.98e-17!52;UBERON:0002020!1.00e-16!34;UBERON:0000033!2.22e-15!63;UBERON:0000955!2.28e-15!50;UBERON:0006238!2.28e-15!50;UBERON:0002616!4.54e-15!49;UBERON:0003056!5.33e-14!49;UBERON:0003080!1.85e-13!40;UBERON:0002791!1.90e-13!29;UBERON:0003528!1.90e-13!29;UBERON:0001893!1.90e-13!29;UBERON:0002780!6.23e-13!39;UBERON:0001890!6.23e-13!39;UBERON:0006240!6.23e-13!39;UBERON:0000956!5.50e-09!21;UBERON:0001869!5.50e-09!21;UBERON:0000203!5.50e-09!21;UBERON:0000025!5.94e-09!114;UBERON:0000468!6.04e-09!333;UBERON:0004111!2.67e-08!122;UBERON:0002619!5.32e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.22e-20,73;UBERON:0001016,4.37e-20,75;UBERON:0000073,2.44e-18,54;UBERON:0002346,3.02e-18,64;UBERON:0003075,3.02e-18,64;UBERON:0007284,3.02e-18,64;UBERON:0010314,1.20e-17,92;UBERON:0001049,2.58e-17,52;UBERON:0005068,2.58e-17,52;UBERON:0006241,2.58e-17,52;UBERON:0007135,2.58e-17,52;UBERON:0004121,4.67e-17,95;UBERON:0000924,4.67e-17,95;UBERON:0006601,4.67e-17,95;UBERON:0002020,7.17e-17,34;UBERON:0010371,4.25e-15,73;UBERON:0003056,5.89e-14,49;UBERON:0000955,7.71e-14,47;UBERON:0006238,7.71e-14,47;UBERON:0003528,1.46e-13,29;UBERON:0002791,1.46e-13,29;UBERON:0001893,1.46e-13,29;UBERON:0002616,1.52e-13,46;UBERON:0003080,2.12e-13,40;UBERON:0002780,7.19e-13,39;UBERON:0001890,7.19e-13,39;UBERON:0006240,7.19e-13,39;UBERON:0000956,4.67e-09,21;UBERON:0001869,4.67e-09,21;UBERON:0000203,4.67e-09,21;UBERON:0000025,7.63e-09,114;UBERON:0004111,3.39e-08,122;UBERON:0002619,4.72e-07,17|phase1_expression=8.64803774365887,5.58360652222978,7.27998783023258,0,0,1.00727563147134,0.467225281191051,0,0.422366166455,0,0,0,0,0,0.333109761815663,0.202475267389826,0,0,0,0,14.7124891961351,0.595745707205312,0.261199789138935,15.359272588167,19.4997888907094,2.29692785646008,1.29228598847722,2.80112602491656,0.570070258369122,0.504060259519861,1.33038306393183,6.35030673459631,7.99584223859941,0,0,0.664938581433969,0.408338712524738,0,0,0,0,0,0,0.629484089877886,0.202753862439029,0.367093504323363,0,3.70642765846759,3.51497892375155,1.94429899074283,3.63964696225943,8.62515386189829,0,0,0.336093799142464,0.514518872071894,0.85960031981627,5.15672092277442,92.053989691117,98.9213131238701,101.413024560989,1.69422266034566,0,0,0,0,5.99200221036809,4.99483796918021,37.0171915941265,41.5818290061607,39.5410927340598,50.5602242394732,46.3823935998388,40.1769821425049,28.370259421398,51.4762520501612,37.4393995397922,37.2847027208748,38.0944202475484,96.2769900430415,69.9880473558434,96.3689735530006,35.177057874174,34.8912818219642,30.4068513075852,76.0141750522063,66.345203252382,102.892494095566,5.14938114665652,12.9983083383671,9.85539261585705,2.58127163094416,0,0,1.29955283489534,0,10.3928870897496,0,0,0,8.16891834704747,0,0,0,0.216491041011214,0,0,3.31133251185274,4.14300613835475,3.41416919849097,9.1947223186052,12.7875500891099,8.53277339847416,9.64624899536784,12.9347577849275,4.52399728786832,0.988779870937496,2.74738778147832,6.19227386364912,27.1768307911647,17.0047969214503,11.6370060752453,0,13.1751358655196,16.7557365450764,0.510914110417183,0.359445373517761,0.599902730993408,0.381210681219194,38.4961943270394,30.652540388848,61.5706325353036,31.462201954802,36.5673103982373,35.9473317088039,39.1001443993296,9.980257657331,5.97153458928446,2.52722758433675,2.52530227063769,5.46505860443356,16.0931473103431,13.5046597354012,18.0845781402858,18.9821832632205,19.3451717630123,13.8678552348399,15.5222022443409,1.94011193639558,2.08016688184601,4.04687585577082,3.94552318369635,4.72680323683516,7.3132954969655,6.58502836505419,16.7188784127534,0,0.257347907114715,0,9.11353399156208,8.91199027928165,7.92273070428465,9.46978942340841,12.3961466000864,8.63895832169318,15.3472403535269,14.4867636755794,8.17357396570186,14.3167069424728,12.6408947340903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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=52250 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BGH4 | |||
|association_with_transcript=1bp_to_uc009chc.1_5end | |||
|cluster_id=chr6:71657855..71657872,+ | |||
|description=CAGE_peak_1_at_Reep1_5end | |||
|id=chr6:71657855..71657872,+ | |||
|ontology_enrichment_celltype=CL:0000117!9.06e-15!23;CL:0000337!9.06e-15!23;CL:0000540!3.69e-13!33;CL:0000047!3.69e-13!33;CL:0000031!3.69e-13!33;CL:0000404!3.69e-13!33;CL:0002319!1.43e-09!43;CL:0000221!1.56e-09!44;CL:0000133!1.56e-09!44;CL:0000393!6.34e-09!39;CL:0000211!6.34e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.79e-15,23;CL:0000337,6.79e-15,23;CL:0000540,2.86e-13,33;CL:0000047,2.86e-13,33;CL:0000031,2.86e-13,33;CL:0000404,2.86e-13,33;CL:0002319,1.02e-09,43;CL:0000221,1.11e-09,44;CL:0000133,1.11e-09,44;CL:0000393,1.64e-08,39;CL:0000211,1.64e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.01e-20!73;UBERON:0005743!4.01e-20!73;UBERON:0000073!5.44e-20!75;UBERON:0001016!5.44e-20!75;UBERON:0002346!1.02e-17!71;UBERON:0003075!1.02e-17!71;UBERON:0007284!1.02e-17!71;UBERON:0004121!1.79e-17!102;UBERON:0000924!1.79e-17!102;UBERON:0006601!1.79e-17!102;UBERON:0001049!2.98e-17!52;UBERON:0005068!2.98e-17!52;UBERON:0006241!2.98e-17!52;UBERON:0007135!2.98e-17!52;UBERON:0002020!1.00e-16!34;UBERON:0000033!2.22e-15!63;UBERON:0000955!2.28e-15!50;UBERON:0006238!2.28e-15!50;UBERON:0002616!4.54e-15!49;UBERON:0003056!5.33e-14!49;UBERON:0003080!1.85e-13!40;UBERON:0002791!1.90e-13!29;UBERON:0003528!1.90e-13!29;UBERON:0001893!1.90e-13!29;UBERON:0002780!6.23e-13!39;UBERON:0001890!6.23e-13!39;UBERON:0006240!6.23e-13!39;UBERON:0000956!5.50e-09!21;UBERON:0001869!5.50e-09!21;UBERON:0000203!5.50e-09!21;UBERON:0000025!5.94e-09!114;UBERON:0000468!6.04e-09!333;UBERON:0004111!2.67e-08!122;UBERON:0002619!5.32e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.22e-20,73;UBERON:0001016,4.37e-20,75;UBERON:0000073,2.44e-18,54;UBERON:0002346,3.02e-18,64;UBERON:0003075,3.02e-18,64;UBERON:0007284,3.02e-18,64;UBERON:0010314,1.20e-17,92;UBERON:0001049,2.58e-17,52;UBERON:0005068,2.58e-17,52;UBERON:0006241,2.58e-17,52;UBERON:0007135,2.58e-17,52;UBERON:0004121,4.67e-17,95;UBERON:0000924,4.67e-17,95;UBERON:0006601,4.67e-17,95;UBERON:0002020,7.17e-17,34;UBERON:0010371,4.25e-15,73;UBERON:0003056,5.89e-14,49;UBERON:0000955,7.71e-14,47;UBERON:0006238,7.71e-14,47;UBERON:0003528,1.46e-13,29;UBERON:0002791,1.46e-13,29;UBERON:0001893,1.46e-13,29;UBERON:0002616,1.52e-13,46;UBERON:0003080,2.12e-13,40;UBERON:0002780,7.19e-13,39;UBERON:0001890,7.19e-13,39;UBERON:0006240,7.19e-13,39;UBERON:0000956,4.67e-09,21;UBERON:0001869,4.67e-09,21;UBERON:0000203,4.67e-09,21;UBERON:0000025,7.63e-09,114;UBERON:0004111,3.39e-08,122;UBERON:0002619,4.72e-07,17 | |||
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| |||
|short_description=p1@Reep1 | |||
}} |
Latest revision as of 16:56, 1 October 2015
Short description: | p1@Reep1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Reep1_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 1bp_to_uc009chc.1_5end |
EntrezGene: | Reep1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.79e-15 | 23 |
neuroblast (sensu Vertebrata) | 6.79e-15 | 23 |
neuron | 2.86e-13 | 33 |
neuronal stem cell | 2.86e-13 | 33 |
neuroblast | 2.86e-13 | 33 |
electrically signaling cell | 2.86e-13 | 33 |
neural cell | 1.02e-09 | 43 |
ectodermal cell | 1.11e-09 | 44 |
neurectodermal cell | 1.11e-09 | 44 |
electrically responsive cell | 1.64e-08 | 39 |
electrically active cell | 1.64e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.22e-20 | 73 |
nervous system | 4.37e-20 | 75 |
regional part of nervous system | 2.44e-18 | 54 |
neurectoderm | 3.02e-18 | 64 |
neural plate | 3.02e-18 | 64 |
presumptive neural plate | 3.02e-18 | 64 |
structure with developmental contribution from neural crest | 1.20e-17 | 92 |
neural tube | 2.58e-17 | 52 |
neural rod | 2.58e-17 | 52 |
future spinal cord | 2.58e-17 | 52 |
neural keel | 2.58e-17 | 52 |
ectoderm-derived structure | 4.67e-17 | 95 |
ectoderm | 4.67e-17 | 95 |
presumptive ectoderm | 4.67e-17 | 95 |
gray matter | 7.17e-17 | 34 |
ecto-epithelium | 4.25e-15 | 73 |
pre-chordal neural plate | 5.89e-14 | 49 |
brain | 7.71e-14 | 47 |
future brain | 7.71e-14 | 47 |
brain grey matter | 1.46e-13 | 29 |
regional part of telencephalon | 1.46e-13 | 29 |
telencephalon | 1.46e-13 | 29 |
regional part of brain | 1.52e-13 | 46 |
anterior neural tube | 2.12e-13 | 40 |
regional part of forebrain | 7.19e-13 | 39 |
forebrain | 7.19e-13 | 39 |
future forebrain | 7.19e-13 | 39 |
cerebral cortex | 4.67e-09 | 21 |
cerebral hemisphere | 4.67e-09 | 21 |
pallium | 4.67e-09 | 21 |
tube | 7.63e-09 | 114 |
anatomical conduit | 3.39e-08 | 122 |
regional part of cerebral cortex | 4.72e-07 | 17 |