FFCP PHASE1:Mm9::chr6:92041399..92041417,+: Difference between revisions
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{{FFCP|EntrezGene=22026|HGNC=|MCL_coexpression_id=959|UniProt=P49117,Q3ZAS1|association_with_transcript=0bp_to_NM_011630,uc009cyp.2_5end|description=CAGE_peak_2_at_Nr2c2_5end|id=chr6:92041399..92041417,+|ontology_enrichment_celltype=CL:0000540!5.23e-14!33;CL:0000047!5.23e-14!33;CL:0000031!5.23e-14!33;CL:0000404!5.23e-14!33;CL:0000117!2.09e-11!23;CL:0000337!2.09e-11!23;CL:0000393!6.24e-10!39;CL:0000211!6.24e-10!39;CL:0000221!5.29e-07!44;CL:0000133!5.29e-07!44|ontology_enrichment_celltype_v019_2=CL:0000540,4.08e-14,33;CL:0000047,4.08e-14,33;CL:0000031,4.08e-14,33;CL:0000404,4.08e-14,33;CL:0000117,1.72e-11,23;CL:0000337,1.72e-11,23;CL:0000393,4.07e-10,39;CL:0000211,4.07e-10,39;CL:0000221,4.13e-07,44;CL:0000133,4.13e-07,44;CL:0002319,9.71e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.15e-18!73;UBERON:0005743!2.15e-18!73;UBERON:0000073!9.08e-18!75;UBERON:0001016!9.08e-18!75;UBERON:0002346!1.56e-16!71;UBERON:0003075!1.56e-16!71;UBERON:0007284!1.56e-16!71;UBERON:0004121!3.83e-16!102;UBERON:0000924!3.83e-16!102;UBERON:0006601!3.83e-16!102;UBERON:0000033!4.11e-16!63;UBERON:0001049!1.83e-15!52;UBERON:0005068!1.83e-15!52;UBERON:0006241!1.83e-15!52;UBERON:0007135!1.83e-15!52;UBERON:0003056!8.74e-15!49;UBERON:0000955!1.02e-14!50;UBERON:0006238!1.02e-14!50;UBERON:0002616!2.11e-14!49;UBERON:0002020!2.76e-14!34;UBERON:0003080!2.07e-13!40;UBERON:0002780!6.71e-13!39;UBERON:0001890!6.71e-13!39;UBERON:0006240!6.71e-13!39;UBERON:0002791!2.04e-12!29;UBERON:0003528!2.04e-12!29;UBERON:0001893!2.04e-12!29;UBERON:0000956!6.81e-10!21;UBERON:0001869!6.81e-10!21;UBERON:0000203!6.81e-10!21;UBERON:0000468!1.28e-09!333;UBERON:0000153!7.59e-08!94;UBERON:0007811!8.56e-08!86;UBERON:0002021!1.22e-07!10;UBERON:0000411!1.22e-07!10;UBERON:0001950!1.22e-07!10;UBERON:0000922!1.26e-07!328;UBERON:0002619!1.61e-07!17;UBERON:0000025!7.68e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.26e-18,73;UBERON:0001016,5.44e-18,75;UBERON:0002346,1.00e-17,64;UBERON:0003075,1.00e-17,64;UBERON:0007284,1.00e-17,64;UBERON:0004121,5.42e-17,95;UBERON:0000924,5.42e-17,95;UBERON:0006601,5.42e-17,95;UBERON:0010371,1.52e-16,73;UBERON:0000073,2.47e-16,54;UBERON:0001049,2.01e-15,52;UBERON:0005068,2.01e-15,52;UBERON:0006241,2.01e-15,52;UBERON:0007135,2.01e-15,52;UBERON:0003056,8.31e-15,49;UBERON:0010314,2.09e-14,92;UBERON:0002020,2.74e-14,34;UBERON:0003080,2.03e-13,40;UBERON:0000955,2.66e-13,47;UBERON:0006238,2.66e-13,47;UBERON:0002616,5.45e-13,46;UBERON:0002780,6.67e-13,39;UBERON:0001890,6.67e-13,39;UBERON:0006240,6.67e-13,39;UBERON:0003528,2.10e-12,29;UBERON:0002791,2.10e-12,29;UBERON:0001893,2.10e-12,29;UBERON:0000956,7.41e-10,21;UBERON:0001869,7.41e-10,21;UBERON:0000203,7.41e-10,21;UBERON:0002021,1.08e-07,10;UBERON:0000411,1.08e-07,10;UBERON:0001950,1.08e-07,10;UBERON:0002619,1.80e-07,17;UBERON:0000922,2.56e-07,320|phase1_expression=4.48416771893423,1.39590163055744,1.81999695755814,1.20985684522732,1.50268718983904,0.839396359559449,1.40167584357315,1.54947988129892,0.281577444303333,0.70219357896598,0.856089841127525,1.19658238493005,1.19840510951844,1.66098764596095,1.99865857089398,2.42970320867791,4.19737126876888,0.788655413395594,1.37114433605739,2.12194825899015,4.08207792725135,0.595745707205312,0.522399578277871,1.43993180514066,0.68822784320151,0.57423196411502,0.430761996159075,1.72376986148711,1.33016393619462,3.78045194639896,1.55211357458713,0.635030673459631,0,0,2.3108129580102,0.498703936075477,1.83752420636132,0,0.7813353445238,0,0,0,0.485510353031154,1.38486499773135,1.72340783073175,1.83546752161682,0.782391344348039,0.218025156380447,0.878744730937887,0.194429899074283,0.419959264876088,0,1.00669563634642,0.725362142011344,1.34437519656986,1.02903774414379,1.14613375975503,0,9.5088736604011,5.81890077199236,8.23980824558033,1.69422266034566,0,0.449949858640699,0,0.7104801149461,0.599200221036809,0,10.8874092923902,8.6403800532282,6.30974884054146,3.71346279724945,3.3130281142742,7.96190194897201,4.2172007248024,4.5960939330501,4.40463523997555,6.2566795661742,4.6081959976873,8.83638127792299,4.29991924931325,7.8137005583514,3.07101298901519,3.93933827022176,4.12555268997387,4.41942878210502,5.97961059356232,7.82877672466262,1.8931548333296,1.73814588245607,2.31891590961342,0.860423876981386,0,1.07940638327563,0.649776417447669,0.448026887097336,1.54488862144927,1.70430322578058,0.779358013808606,1.06001872353102,5.0703631119605,1.28326477414318,0,0,0.649473123033642,1.26679932737549,1.01104889002957,1.37020655662872,0.517875767294343,2.3750742250372,2.25530924795977,0.913396434936424,1.84492397804847,2.11011696773672,2.4693628498498,3.51866455723091,0.247194967734374,0.722996784599558,0,3.72063754879041,1.98757366614354,1.93950101254089,0,3.80615036115011,9.00620839297857,1.53274233125155,0.718890747035522,0,0.762421362438388,5.69204429738326,2.28750301409313,8.67015029578764,7.82209440865244,10.2286182932132,5.40248915854856,3.89379031362618,7.02691610567182,1.990511529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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=22026 | |||
|HGNC= | |||
|MCL_coexpression_id=959 | |||
|TSSclassifier=NA | |||
|UniProt=P49117,Q3ZAS1 | |||
|association_with_transcript=0bp_to_NM_011630,uc009cyp.2_5end | |||
|cluster_id=chr6:92041399..92041417,+ | |||
|description=CAGE_peak_2_at_Nr2c2_5end | |||
|id=chr6:92041399..92041417,+ | |||
|ontology_enrichment_celltype=CL:0000540!5.23e-14!33;CL:0000047!5.23e-14!33;CL:0000031!5.23e-14!33;CL:0000404!5.23e-14!33;CL:0000117!2.09e-11!23;CL:0000337!2.09e-11!23;CL:0000393!6.24e-10!39;CL:0000211!6.24e-10!39;CL:0000221!5.29e-07!44;CL:0000133!5.29e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.08e-14,33;CL:0000047,4.08e-14,33;CL:0000031,4.08e-14,33;CL:0000404,4.08e-14,33;CL:0000117,1.72e-11,23;CL:0000337,1.72e-11,23;CL:0000393,4.07e-10,39;CL:0000211,4.07e-10,39;CL:0000221,4.13e-07,44;CL:0000133,4.13e-07,44;CL:0002319,9.71e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.15e-18!73;UBERON:0005743!2.15e-18!73;UBERON:0000073!9.08e-18!75;UBERON:0001016!9.08e-18!75;UBERON:0002346!1.56e-16!71;UBERON:0003075!1.56e-16!71;UBERON:0007284!1.56e-16!71;UBERON:0004121!3.83e-16!102;UBERON:0000924!3.83e-16!102;UBERON:0006601!3.83e-16!102;UBERON:0000033!4.11e-16!63;UBERON:0001049!1.83e-15!52;UBERON:0005068!1.83e-15!52;UBERON:0006241!1.83e-15!52;UBERON:0007135!1.83e-15!52;UBERON:0003056!8.74e-15!49;UBERON:0000955!1.02e-14!50;UBERON:0006238!1.02e-14!50;UBERON:0002616!2.11e-14!49;UBERON:0002020!2.76e-14!34;UBERON:0003080!2.07e-13!40;UBERON:0002780!6.71e-13!39;UBERON:0001890!6.71e-13!39;UBERON:0006240!6.71e-13!39;UBERON:0002791!2.04e-12!29;UBERON:0003528!2.04e-12!29;UBERON:0001893!2.04e-12!29;UBERON:0000956!6.81e-10!21;UBERON:0001869!6.81e-10!21;UBERON:0000203!6.81e-10!21;UBERON:0000468!1.28e-09!333;UBERON:0000153!7.59e-08!94;UBERON:0007811!8.56e-08!86;UBERON:0002021!1.22e-07!10;UBERON:0000411!1.22e-07!10;UBERON:0001950!1.22e-07!10;UBERON:0000922!1.26e-07!328;UBERON:0002619!1.61e-07!17;UBERON:0000025!7.68e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.26e-18,73;UBERON:0001016,5.44e-18,75;UBERON:0002346,1.00e-17,64;UBERON:0003075,1.00e-17,64;UBERON:0007284,1.00e-17,64;UBERON:0004121,5.42e-17,95;UBERON:0000924,5.42e-17,95;UBERON:0006601,5.42e-17,95;UBERON:0010371,1.52e-16,73;UBERON:0000073,2.47e-16,54;UBERON:0001049,2.01e-15,52;UBERON:0005068,2.01e-15,52;UBERON:0006241,2.01e-15,52;UBERON:0007135,2.01e-15,52;UBERON:0003056,8.31e-15,49;UBERON:0010314,2.09e-14,92;UBERON:0002020,2.74e-14,34;UBERON:0003080,2.03e-13,40;UBERON:0000955,2.66e-13,47;UBERON:0006238,2.66e-13,47;UBERON:0002616,5.45e-13,46;UBERON:0002780,6.67e-13,39;UBERON:0001890,6.67e-13,39;UBERON:0006240,6.67e-13,39;UBERON:0003528,2.10e-12,29;UBERON:0002791,2.10e-12,29;UBERON:0001893,2.10e-12,29;UBERON:0000956,7.41e-10,21;UBERON:0001869,7.41e-10,21;UBERON:0000203,7.41e-10,21;UBERON:0002021,1.08e-07,10;UBERON:0000411,1.08e-07,10;UBERON:0001950,1.08e-07,10;UBERON:0002619,1.80e-07,17;UBERON:0000922,2.56e-07,320 | |||
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| |||
|short_description=p2@Nr2c2 | |||
}} |
Latest revision as of 22:34, 1 October 2015
Short description: | p2@Nr2c2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Nr2c2_5end |
Coexpression cluster: | MCL_coexpression_mm9:959 |
Association with transcript: | 0bp_to_NM_011630, uc009cyp.2_5end |
EntrezGene: | Nr2c2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.08e-14 | 33 |
neuronal stem cell | 4.08e-14 | 33 |
neuroblast | 4.08e-14 | 33 |
electrically signaling cell | 4.08e-14 | 33 |
CNS neuron (sensu Vertebrata) | 1.72e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.72e-11 | 23 |
electrically responsive cell | 4.07e-10 | 39 |
electrically active cell | 4.07e-10 | 39 |
ectodermal cell | 4.13e-07 | 44 |
neurectodermal cell | 4.13e-07 | 44 |
neural cell | 9.71e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.26e-18 | 73 |
nervous system | 5.44e-18 | 75 |
neurectoderm | 1.00e-17 | 64 |
neural plate | 1.00e-17 | 64 |
presumptive neural plate | 1.00e-17 | 64 |
ectoderm-derived structure | 5.42e-17 | 95 |
ectoderm | 5.42e-17 | 95 |
presumptive ectoderm | 5.42e-17 | 95 |
ecto-epithelium | 1.52e-16 | 73 |
regional part of nervous system | 2.47e-16 | 54 |
neural tube | 2.01e-15 | 52 |
neural rod | 2.01e-15 | 52 |
future spinal cord | 2.01e-15 | 52 |
neural keel | 2.01e-15 | 52 |
pre-chordal neural plate | 8.31e-15 | 49 |
structure with developmental contribution from neural crest | 2.09e-14 | 92 |
gray matter | 2.74e-14 | 34 |
anterior neural tube | 2.03e-13 | 40 |
brain | 2.66e-13 | 47 |
future brain | 2.66e-13 | 47 |
regional part of brain | 5.45e-13 | 46 |
regional part of forebrain | 6.67e-13 | 39 |
forebrain | 6.67e-13 | 39 |
future forebrain | 6.67e-13 | 39 |
brain grey matter | 2.10e-12 | 29 |
regional part of telencephalon | 2.10e-12 | 29 |
telencephalon | 2.10e-12 | 29 |
cerebral cortex | 7.41e-10 | 21 |
cerebral hemisphere | 7.41e-10 | 21 |
pallium | 7.41e-10 | 21 |
occipital lobe | 1.08e-07 | 10 |
visual cortex | 1.08e-07 | 10 |
neocortex | 1.08e-07 | 10 |
regional part of cerebral cortex | 1.80e-07 | 17 |
embryo | 2.56e-07 | 320 |