FFCP PHASE1:Mm9::chr8:109207033..109207054,+: Difference between revisions
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{{FFCP|EntrezGene=272538|HGNC=|MCL_coexpression_id=122|UniProt=Q8C3S2|association_with_transcript=65bp_to_ENSMUST00000048359,NM_173037,uc009ngk.1,uc009ngl.1,uc012gjv.1_5end|description=CAGE_peak_2_at_Tmco7_5end|id=chr8:109207033..109207054,+|ontology_enrichment_celltype=CL:0000988!4.16e-08!32;CL:0002032!4.16e-08!32;CL:0000037!4.16e-08!32;CL:0000566!4.16e-08!32;CL:0000837!4.16e-08!32;CL:0000838!8.22e-08!12;CL:0000542!1.10e-07!13;CL:0000051!1.10e-07!13;CL:0000791!1.95e-07!9;CL:0000789!1.95e-07!9;CL:0002420!1.95e-07!9;CL:0002419!1.95e-07!9;CL:0000790!1.95e-07!9;CL:0002031!2.07e-07!25;CL:0000084!3.47e-07!11;CL:0000827!3.47e-07!11;CL:0002320!4.18e-07!46;CL:0000134!4.18e-07!46;CL:0000624!9.03e-07!8;CL:0000414!9.58e-07!11|ontology_enrichment_celltype_v019_2=CL:0000988,2.33e-08,32;CL:0002032,2.33e-08,32;CL:0000037,2.33e-08,32;CL:0000837,2.33e-08,32;CL:0000838,7.20e-08,12;CL:0000542,9.61e-08,13;CL:0000051,9.61e-08,13;CL:0002031,1.15e-07,25;CL:0000791,1.72e-07,9;CL:0000789,1.72e-07,9;CL:0002420,1.72e-07,9;CL:0002419,1.72e-07,9;CL:0000790,1.72e-07,9;CL:0002320,2.56e-07,46;CL:0000134,2.56e-07,46;CL:0000084,3.07e-07,11;CL:0000827,3.07e-07,11;CL:0000624,8.08e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005057!2.25e-11!51;UBERON:0004177!8.25e-11!29;UBERON:0002530!2.37e-10!65;UBERON:0002405!3.11e-10!70;UBERON:0000926!4.20e-10!193;UBERON:0004120!4.20e-10!193;UBERON:0006603!4.20e-10!193;UBERON:0002368!8.06e-10!60;UBERON:0002390!1.17e-09!45;UBERON:0003061!1.17e-09!45;UBERON:0006562!4.54e-09!24;UBERON:0001557!4.54e-09!24;UBERON:0001042!4.54e-09!24;UBERON:0008814!4.54e-09!24;UBERON:0009145!4.54e-09!24;UBERON:0003104!4.60e-09!131;UBERON:0009142!4.60e-09!131;UBERON:0003408!5.35e-09!24;UBERON:0002370!7.48e-09!23;UBERON:0000974!7.48e-09!23;UBERON:0004807!7.48e-09!23;UBERON:0005058!7.48e-09!23;UBERON:0003351!7.48e-09!23;UBERON:0009113!7.48e-09!23;UBERON:0003295!7.48e-09!23;UBERON:0009722!7.48e-09!23;UBERON:0005562!7.48e-09!23;UBERON:0007690!7.48e-09!23;UBERON:0001048!1.28e-08!147;UBERON:0002193!1.29e-08!48;UBERON:0000949!1.43e-08!72;UBERON:0001041!1.23e-07!92;UBERON:0000077!1.79e-07!97;UBERON:0003081!2.61e-07!88;UBERON:0002384!4.18e-07!46|ontology_enrichment_uberon_v019_2=UBERON:0004177,3.12e-11,29;UBERON:0005057,3.12e-11,29;UBERON:0002530,8.82e-11,65;UBERON:0000077,1.89e-10,35;UBERON:0002368,3.03e-10,60;UBERON:0002390,3.55e-10,45;UBERON:0003061,3.55e-10,45;UBERON:0006562,1.79e-09,24;UBERON:0001557,1.79e-09,24;UBERON:0001042,1.79e-09,24;UBERON:0008814,1.79e-09,24;UBERON:0009145,1.79e-09,24;UBERON:0003408,2.13e-09,24;UBERON:0002370,2.96e-09,23;UBERON:0000974,2.96e-09,23;UBERON:0004807,2.96e-09,23;UBERON:0005058,2.96e-09,23;UBERON:0003351,2.96e-09,23;UBERON:0009113,2.96e-09,23;UBERON:0003295,2.96e-09,23;UBERON:0009722,2.96e-09,23;UBERON:0005562,2.96e-09,23;UBERON:0007690,2.96e-09,23;UBERON:0002193,3.00e-09,48;UBERON:0002405,3.00e-09,48;UBERON:0000949,6.95e-09,72;UBERON:0001041,1.31e-08,80;UBERON:0001048,1.88e-08,134;UBERON:0002384,2.56e-07,46;UBERON:0003081,4.97e-07,87;UBERON:0000926,6.82e-07,120;UBERON:0004120,6.82e-07,120;UBERON:0006603,6.82e-07,120;UBERON:0000072,9.36e-07,27|phase1_expression=1.76163731815273,0,0.454999239389536,0.60492842261366,0,0,0.467225281191051,8.39301602370246,13.6565060487117,12.6394844213876,10.2730780935303,6.62108919661292,14.0384598543589,12.3262767410786,4.99664642723494,4.04950534779652,3.49780939064073,11.0411757875383,7.54129384831563,10.1853516431527,2.04103896362567,1.78723712161594,3.13439746966722,0.319984845586813,0.22940928106717,1.14846392823004,0,0,0.380046838912748,0.756090389279792,0.221730510655305,1.90509202037889,3.69038872550742,15.8481681015439,1.73310971850765,0.831173226792462,0.612508068787107,1.25559489221072,1.5626706890476,0.523523743973798,2.35292595212406,1.36609096991689,1.94204141212461,1.51076181570693,1.11514624341466,1.28482726513177,2.34717403304412,1.30815093828268,2.19686182734472,2.3331587888914,0.839918529752175,0,8.05356509077134,10.8804321301702,11.0910953717013,0.771778308107841,1.43266719969378,2.06268836910977,1.41621522601718,0,1.26766280701236,1.0165335962074,1.77858959222228,1.3498495759221,1.97773272513395,1.4209602298922,0.599200221036809,0.384218305321555,0.622137673850866,0.405017814995072,0.420649922702764,1.99955689082663,2.20868540951614,0.61245399607477,0.958454710182364,1.83843757322004,4.40463523997555,1.27687338085188,1.22885226604995,0.791317726381163,0.823388792421687,0.52091337055676,0.558365998002762,0,0.763991238884051,1.47314292736834,1.85083185038834,1.1183966749518,0.605809546665472,0.453429360640713,3.47837386442013,2.58127163094416,2.719885334831,3.2382191498269,3.89865850468601,4.48026887097336,1.82577746171277,1.1930122580464,0.519572009205738,1.06001872353102,0.845060518660083,0,2.54805239706646,0,0.649473123033642,0.253359865475099,0.505524445014783,1.59857431606684,5.69663344023778,3.56261133755579,1.04091196059682,3.65358573974569,1.61430848079241,2.11011696773672,3.762838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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=272538 | |||
|HGNC= | |||
|MCL_coexpression_id=122 | |||
|TSSclassifier=NA | |||
|UniProt=Q8C3S2 | |||
|association_with_transcript=65bp_to_ENSMUST00000048359,NM_173037,uc009ngk.1,uc009ngl.1,uc012gjv.1_5end | |||
|cluster_id=chr8:109207033..109207054,+ | |||
|description=CAGE_peak_2_at_Tmco7_5end | |||
|id=chr8:109207033..109207054,+ | |||
|ontology_enrichment_celltype=CL:0000988!4.16e-08!32;CL:0002032!4.16e-08!32;CL:0000037!4.16e-08!32;CL:0000566!4.16e-08!32;CL:0000837!4.16e-08!32;CL:0000838!8.22e-08!12;CL:0000542!1.10e-07!13;CL:0000051!1.10e-07!13;CL:0000791!1.95e-07!9;CL:0000789!1.95e-07!9;CL:0002420!1.95e-07!9;CL:0002419!1.95e-07!9;CL:0000790!1.95e-07!9;CL:0002031!2.07e-07!25;CL:0000084!3.47e-07!11;CL:0000827!3.47e-07!11;CL:0002320!4.18e-07!46;CL:0000134!4.18e-07!46;CL:0000624!9.03e-07!8;CL:0000414!9.58e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.33e-08,32;CL:0002032,2.33e-08,32;CL:0000037,2.33e-08,32;CL:0000837,2.33e-08,32;CL:0000838,7.20e-08,12;CL:0000542,9.61e-08,13;CL:0000051,9.61e-08,13;CL:0002031,1.15e-07,25;CL:0000791,1.72e-07,9;CL:0000789,1.72e-07,9;CL:0002420,1.72e-07,9;CL:0002419,1.72e-07,9;CL:0000790,1.72e-07,9;CL:0002320,2.56e-07,46;CL:0000134,2.56e-07,46;CL:0000084,3.07e-07,11;CL:0000827,3.07e-07,11;CL:0000624,8.08e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005057!2.25e-11!51;UBERON:0004177!8.25e-11!29;UBERON:0002530!2.37e-10!65;UBERON:0002405!3.11e-10!70;UBERON:0000926!4.20e-10!193;UBERON:0004120!4.20e-10!193;UBERON:0006603!4.20e-10!193;UBERON:0002368!8.06e-10!60;UBERON:0002390!1.17e-09!45;UBERON:0003061!1.17e-09!45;UBERON:0006562!4.54e-09!24;UBERON:0001557!4.54e-09!24;UBERON:0001042!4.54e-09!24;UBERON:0008814!4.54e-09!24;UBERON:0009145!4.54e-09!24;UBERON:0003104!4.60e-09!131;UBERON:0009142!4.60e-09!131;UBERON:0003408!5.35e-09!24;UBERON:0002370!7.48e-09!23;UBERON:0000974!7.48e-09!23;UBERON:0004807!7.48e-09!23;UBERON:0005058!7.48e-09!23;UBERON:0003351!7.48e-09!23;UBERON:0009113!7.48e-09!23;UBERON:0003295!7.48e-09!23;UBERON:0009722!7.48e-09!23;UBERON:0005562!7.48e-09!23;UBERON:0007690!7.48e-09!23;UBERON:0001048!1.28e-08!147;UBERON:0002193!1.29e-08!48;UBERON:0000949!1.43e-08!72;UBERON:0001041!1.23e-07!92;UBERON:0000077!1.79e-07!97;UBERON:0003081!2.61e-07!88;UBERON:0002384!4.18e-07!46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,3.12e-11,29;UBERON:0005057,3.12e-11,29;UBERON:0002530,8.82e-11,65;UBERON:0000077,1.89e-10,35;UBERON:0002368,3.03e-10,60;UBERON:0002390,3.55e-10,45;UBERON:0003061,3.55e-10,45;UBERON:0006562,1.79e-09,24;UBERON:0001557,1.79e-09,24;UBERON:0001042,1.79e-09,24;UBERON:0008814,1.79e-09,24;UBERON:0009145,1.79e-09,24;UBERON:0003408,2.13e-09,24;UBERON:0002370,2.96e-09,23;UBERON:0000974,2.96e-09,23;UBERON:0004807,2.96e-09,23;UBERON:0005058,2.96e-09,23;UBERON:0003351,2.96e-09,23;UBERON:0009113,2.96e-09,23;UBERON:0003295,2.96e-09,23;UBERON:0009722,2.96e-09,23;UBERON:0005562,2.96e-09,23;UBERON:0007690,2.96e-09,23;UBERON:0002193,3.00e-09,48;UBERON:0002405,3.00e-09,48;UBERON:0000949,6.95e-09,72;UBERON:0001041,1.31e-08,80;UBERON:0001048,1.88e-08,134;UBERON:0002384,2.56e-07,46;UBERON:0003081,4.97e-07,87;UBERON:0000926,6.82e-07,120;UBERON:0004120,6.82e-07,120;UBERON:0006603,6.82e-07,120;UBERON:0000072,9.36e-07,27 | |||
|phase1_expression=1.76163731815273,0,0.454999239389536,0.60492842261366,0,0,0.467225281191051,8.39301602370246,13.6565060487117,12.6394844213876,10.2730780935303,6.62108919661292,14.0384598543589,12.3262767410786,4.99664642723494,4.04950534779652,3.49780939064073,11.0411757875383,7.54129384831563,10.1853516431527,2.04103896362567,1.78723712161594,3.13439746966722,0.319984845586813,0.22940928106717,1.14846392823004,0,0,0.380046838912748,0.756090389279792,0.221730510655305,1.90509202037889,3.69038872550742,15.8481681015439,1.73310971850765,0.831173226792462,0.612508068787107,1.25559489221072,1.5626706890476,0.523523743973798,2.35292595212406,1.36609096991689,1.94204141212461,1.51076181570693,1.11514624341466,1.28482726513177,2.34717403304412,1.30815093828268,2.19686182734472,2.3331587888914,0.839918529752175,0,8.05356509077134,10.8804321301702,11.0910953717013,0.771778308107841,1.43266719969378,2.06268836910977,1.41621522601718,0,1.26766280701236,1.0165335962074,1.77858959222228,1.3498495759221,1.97773272513395,1.4209602298922,0.599200221036809,0.384218305321555,0.622137673850866,0.405017814995072,0.420649922702764,1.99955689082663,2.20868540951614,0.61245399607477,0.958454710182364,1.83843757322004,4.40463523997555,1.27687338085188,1.22885226604995,0.791317726381163,0.823388792421687,0.52091337055676,0.558365998002762,0,0.763991238884051,1.47314292736834,1.85083185038834,1.1183966749518,0.605809546665472,0.453429360640713,3.47837386442013,2.58127163094416,2.719885334831,3.2382191498269,3.89865850468601,4.48026887097336,1.82577746171277,1.1930122580464,0.519572009205738,1.06001872353102,0.845060518660083,0,2.54805239706646,0,0.649473123033642,0.253359865475099,0.505524445014783,1.59857431606684,5.69663344023778,3.56261133755579,1.04091196059682,3.65358573974569,1.61430848079241,2.11011696773672,3.76283862834255,1.75933227861546,1.97755974187499,2.89198713839823,7.07688441559899,1.13236794963186,2.87093973998512,2.42437626567611,0,1.75668478206928,4.60782754989601,1.02182822083437,3.59445373517761,2.39961092397363,1.77898317902291,1.79748767285787,1.83000241127451,0.251308704225729,2.60736480288415,2.30143911597297,1.0389402227978,3.0825839982874,3.05518091550949,2.98576729464223,1.0108910337347,2.10441855886474,0.910843100738926,1.37941262660084,1.26043490863744,1.35634336052144,2.17716797284249,1.7935920839879,1.87403449119458,4.65666067330228,1.29340795759705,0.945530400839096,1.40760899331159,1.7535658594206,3.33656699070717,1.74126083261083,2.67516777330327,0.796137067273973,2.1066395619397,2.05878325691772,3.12579849335152,2.07125772535502,1.17263029990548,1.44049649168812,2.13070262026689,1.37734962223183,1.3884040159864,0.930135779001631,1.3413670069981,1.98501082024188,1.6455984991348,1.31333971263276,2.1888578577381,3.65499968563331,2.19550115291051,3.08674763148855,3.57492912559016,1.54356918568927,0.330418782983798,0.264450566663544,2.13288250535234,1.62565670302307,1.54640953586512,1.61346819698674,0.444756087689741,1.14135375667535,0.474529061544512,1.64698954724011,1.75934646160189,0.795825888164603,1.36474860983384,0.898819408654221,1.08069024937347,0.796565093017469,2.46568271239006,2.17072173958485,5.63538678365402,1.4255592949172,2.52138233317913,2.52488951605147,2.59269802209455,1.91893192373483,1.56998727841375,3.08492909804501,1.77871576252289,1.83529616287703,2.35870794135844,1.57403478669398,1.82574109249653,1.4470629585145,1.2731292589071,2.5892652370573,2.7562988551756,2.19649130550465,0,1.48856379067401,4.68056509671841,3.03094653536534,1.79397413521912,2.8946611281802,2.95605104266567,2.08440552947533,1.14075483509418,0.848725428875941,1.64283173801951,1.17254380209271,1.42826184531608,1.95133647857799,1.41871629695572,2.21464689648775,3.34855014180723,3.27726629431476,3.10832967358612,2.4590339958857,0,0.54390568381871,1.96705709207614,1.65562047782839,2.40825884981688,0.937693492737625,2.13115428989678,2.27223834483936,1.57754109708128,1.17131623288992,1.29254038639679,0.477937595905104,0.668396022247182,0.566153061577665,1.61924280669958,0.876767573733936,1.58115111178609,4.81981974632711,2.83880170416537,2.13678724400706,4.56083486190013,1.97964147567043,3.98235415019888,0.728341908464944,1.209294227859,1.32023555829129,2.06711325016541,3.07435147943927,1.80899805217755,1.45413491791002,1.06949213515416,2.84433082142234,1.05418608574999,2.06271086496374,2.7235168460303,1.08036656418786,2.06973894052407,1.28602221018955,1.41872186913819,2.67553226403106,2.96188237083818,3.65357938937519,0.704015124191131,0.42366414172764,2.64634077665954,2.30840754118072,2.09903754704677,1.68876189798836,1.67121281604391,0.820704498725306,0.291480836629851,1.11255181206306,3.41741761595705,2.06386867963222,3.33350149265481,3.20226376907975,4.37421528707281,3.20289442489132,3.22959016988325,2.37917468950219,2.07299960706636,1.90934123603023,1.89801596148681,2.84647253977588,0.972048067396211,1.04544148007234,2.18362563746178,1.48350781023303,1.98368293740806,2.09404753587224,1.16653475962614,2.48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| |||
|short_description=p2@Tmco7 | |||
}} |
Latest revision as of 08:50, 27 September 2015
Short description: | p2@Tmco7 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Tmco7_5end |
Coexpression cluster: | MCL_coexpression_mm9:122 |
Association with transcript: | 65bp_to_ENSMUST00000048359, NM_173037, uc009ngk.1, uc009ngl.1, uc012gjv.1_5end |
EntrezGene: | Tmco7 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.33e-08 | 32 |
hematopoietic oligopotent progenitor cell | 2.33e-08 | 32 |
hematopoietic stem cell | 2.33e-08 | 32 |
hematopoietic multipotent progenitor cell | 2.33e-08 | 32 |
lymphoid lineage restricted progenitor cell | 7.20e-08 | 12 |
lymphocyte | 9.61e-08 | 13 |
common lymphoid progenitor | 9.61e-08 | 13 |
hematopoietic lineage restricted progenitor cell | 1.15e-07 | 25 |
mature alpha-beta T cell | 1.72e-07 | 9 |
alpha-beta T cell | 1.72e-07 | 9 |
immature T cell | 1.72e-07 | 9 |
mature T cell | 1.72e-07 | 9 |
immature alpha-beta T cell | 1.72e-07 | 9 |
connective tissue cell | 2.56e-07 | 46 |
mesenchymal cell | 2.56e-07 | 46 |
T cell | 3.07e-07 | 11 |
pro-T cell | 3.07e-07 | 11 |
CD4-positive, alpha-beta T cell | 8.08e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 3.12e-11 | 29 |
immune organ | 3.12e-11 | 29 |
gland | 8.82e-11 | 65 |
mixed endoderm/mesoderm-derived structure | 1.89e-10 | 35 |
endocrine gland | 3.03e-10 | 60 |
hematopoietic system | 3.55e-10 | 45 |
blood island | 3.55e-10 | 45 |
pharynx | 1.79e-09 | 24 |
upper respiratory tract | 1.79e-09 | 24 |
chordate pharynx | 1.79e-09 | 24 |
pharyngeal arch system | 1.79e-09 | 24 |
pharyngeal region of foregut | 1.79e-09 | 24 |
gland of gut | 2.13e-09 | 24 |
thymus | 2.96e-09 | 23 |
neck | 2.96e-09 | 23 |
respiratory system epithelium | 2.96e-09 | 23 |
hemolymphoid system gland | 2.96e-09 | 23 |
pharyngeal epithelium | 2.96e-09 | 23 |
thymic region | 2.96e-09 | 23 |
pharyngeal gland | 2.96e-09 | 23 |
entire pharyngeal arch endoderm | 2.96e-09 | 23 |
thymus primordium | 2.96e-09 | 23 |
early pharyngeal endoderm | 2.96e-09 | 23 |
hemolymphoid system | 3.00e-09 | 48 |
immune system | 3.00e-09 | 48 |
endocrine system | 6.95e-09 | 72 |
foregut | 1.31e-08 | 80 |
primordium | 1.88e-08 | 134 |
connective tissue | 2.56e-07 | 46 |
lateral plate mesoderm | 4.97e-07 | 87 |
mesoderm | 6.82e-07 | 120 |
mesoderm-derived structure | 6.82e-07 | 120 |
presumptive mesoderm | 6.82e-07 | 120 |
segment of respiratory tract | 9.36e-07 | 27 |