FFCP PHASE1:Mm9::chr8:12395500..12395511,+: Difference between revisions
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{{FFCP|EntrezGene=20664|HGNC=|MCL_coexpression_id=184|UniProt=Q80XF2|association_with_transcript=-7bp_to_NM_009233,uc009kwa.2_5end|description=CAGE_peak_5_at_Sox1_5end|id=chr8:12395500..12395511,+|ontology_enrichment_celltype=CL:0000117!9.19e-16!23;CL:0000337!9.19e-16!23;CL:0002319!1.42e-14!43;CL:0000221!5.12e-14!44;CL:0000133!5.12e-14!44;CL:0000055!3.62e-11!50;CL:0000540!1.15e-10!33;CL:0000047!1.15e-10!33;CL:0000031!1.15e-10!33;CL:0000404!1.15e-10!33;CL:0002609!2.22e-08!6;CL:0000393!5.82e-08!39;CL:0000211!5.82e-08!39;CL:0002453!9.39e-07!8|ontology_enrichment_celltype_v019_2=CL:0002319,9.02e-20,43;CL:0000221,3.18e-19,44;CL:0000133,3.18e-19,44;CL:0000117,6.33e-19,23;CL:0000337,6.33e-19,23;CL:0002609,2.23e-18,6;CL:0000540,2.53e-12,33;CL:0000047,2.53e-12,33;CL:0000031,2.53e-12,33;CL:0000404,2.53e-12,33;CL:0002453,2.09e-11,8;CL:0002321,1.65e-10,70;CL:0002608,3.40e-10,3;CL:0000393,5.39e-10,39;CL:0000211,5.39e-10,39;CL:0002613,4.92e-09,3;CL:0000333,5.25e-09,10;CL:0000095,5.25e-09,10;CL:0000243,5.25e-09,10;CL:0000123,5.25e-09,10;CL:0000125,5.25e-09,10;CL:0000030,5.25e-09,10;CL:0000339,5.25e-09,10;CL:0000120,5.58e-09,3;CL:0000128,1.63e-07,6;CL:0000126,1.63e-07,6;CL:0000127,1.63e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.53e-32!73;UBERON:0005743!2.53e-32!73;UBERON:0000073!5.95e-31!75;UBERON:0001016!5.95e-31!75;UBERON:0001049!2.55e-28!52;UBERON:0005068!2.55e-28!52;UBERON:0006241!2.55e-28!52;UBERON:0007135!2.55e-28!52;UBERON:0000955!1.14e-27!50;UBERON:0006238!1.14e-27!50;UBERON:0002616!1.52e-26!49;UBERON:0000033!1.83e-24!63;UBERON:0003080!5.28e-23!40;UBERON:0002346!1.11e-22!71;UBERON:0003075!1.11e-22!71;UBERON:0007284!1.11e-22!71;UBERON:0003056!2.34e-22!49;UBERON:0004121!2.69e-22!102;UBERON:0000924!2.69e-22!102;UBERON:0006601!2.69e-22!102;UBERON:0002780!3.66e-22!39;UBERON:0001890!3.66e-22!39;UBERON:0006240!3.66e-22!39;UBERON:0002020!3.49e-16!34;UBERON:0002791!1.50e-14!29;UBERON:0003528!1.50e-14!29;UBERON:0001893!1.50e-14!29;UBERON:0007811!7.59e-14!86;UBERON:0000153!1.86e-11!94;UBERON:0000956!1.56e-09!21;UBERON:0001869!1.56e-09!21;UBERON:0000203!1.56e-09!21;UBERON:0001894!9.34e-09!10;UBERON:0006222!9.34e-09!10;UBERON:0001954!9.40e-09!7;UBERON:0003022!9.40e-09!7;UBERON:0002421!9.40e-09!7;UBERON:0000349!9.40e-09!7;UBERON:0002600!9.40e-09!7;UBERON:0000007!6.67e-07!8;UBERON:0003296!6.67e-07!8;UBERON:0010133!6.67e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.03e-27,73;UBERON:0001016,3.77e-26,75;UBERON:0000955,1.53e-22,47;UBERON:0006238,1.53e-22,47;UBERON:0002780,2.35e-22,39;UBERON:0001890,2.35e-22,39;UBERON:0006240,2.35e-22,39;UBERON:0003080,1.09e-21,40;UBERON:0002616,1.17e-20,46;UBERON:0001049,9.28e-20,52;UBERON:0005068,9.28e-20,52;UBERON:0006241,9.28e-20,52;UBERON:0007135,9.28e-20,52;UBERON:0004121,2.00e-19,95;UBERON:0000924,2.00e-19,95;UBERON:0006601,2.00e-19,95;UBERON:0003528,2.77e-19,29;UBERON:0002791,2.77e-19,29;UBERON:0001893,2.77e-19,29;UBERON:0000073,7.47e-19,54;UBERON:0002020,3.02e-18,34;UBERON:0003056,6.42e-17,49;UBERON:0002346,3.56e-15,64;UBERON:0003075,3.56e-15,64;UBERON:0007284,3.56e-15,64;UBERON:0001954,9.41e-15,7;UBERON:0003022,9.41e-15,7;UBERON:0002421,9.41e-15,7;UBERON:0000349,9.41e-15,7;UBERON:0002600,9.41e-15,7;UBERON:0000956,1.11e-14,21;UBERON:0001869,1.11e-14,21;UBERON:0000203,1.11e-14,21;UBERON:0010371,9.97e-13,73;UBERON:0002619,1.48e-09,17;UBERON:0000369,2.61e-09,5;UBERON:0002435,2.61e-09,5;UBERON:0000204,2.61e-09,5;UBERON:0010082,2.61e-09,5;UBERON:0010314,3.84e-09,92|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.19483016055474,1.31811709640683,0.972149495371417,1.25987779462826,2.87505128729943,0,0,0,0,0,0,2.83243045203437,1.5869729378161,2.53532561402472,0.338844532069132,0,0,0,0,1.19840044207362,1.15265491596466,4.97710139080693,4.05017814995072,4.83747411108179,0.571301968807607,0,14.8213867050094,14.4726661237537,12.8690630125403,0,0.638436690425939,0.768032666281217,2.76961204233407,3.29355516968675,1.56274011167028,0.837548997004143,0,0.45839474333043,0.294628585473668,1.56608848879013,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.585561594023094,0.628340120440365,0,0,0,0,0.898743836428936,0.915001205637253,3.14135880282161,0.521472960576829,0.511430914660661,2.49345653471472,1.29793010454206,0,0,0,0,0.520481771850815,0,0.540186389416048,0.150704817835715,0.272145996605311,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68231958851302,3.49875682089567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,0.234423373184406,0,0,0,0,0.215423397732799,0,0.222798674082394,0,0,0,0,4.81981974632711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,2.34079422240703,2.19909762430683,0.643011105094777,0.709360934569094,0.535106452806212,0.164549020602121,0.913394847343798,0,0,0,0,0,0,0,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38097570952153,0,0.515559547031063,0,0,1.35004500046361,0.45032120322422,0,0,1.3492355185943,0.798049746802062,1.02440163452481,0.486213434136588,0.628839487883947,0.183843508450014,0.666740183404846,0.412070114477788,0.64183841918363,0.505394423527595,0.25347929989024,1.13175804831646,0.37456602987953,0.320125762024346,0.229741875822453,0.476293691283074,0.231768651889711,0.964546102318525,0,0.294397840268795,0,0.70990322463735,0.238436189947321,0.726732083161643,0.188218760830661,0.592302255241736,0.365855945745545,0.263069711437843,0.135804113845862,1.68342681497322,0.237270036248348,0.394017929502254,0.409231043169689,0.619747364743864,0.192906610981141,0.749431733813838,0.233931608445408,0.644613162144895,0,0,0|short_description=p5@Sox1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20664 | |||
|HGNC= | |||
|MCL_coexpression_id=184 | |||
|TSSclassifier=NA | |||
|UniProt=Q80XF2 | |||
|association_with_transcript=-7bp_to_NM_009233,uc009kwa.2_5end | |||
|cluster_id=chr8:12395500..12395511,+ | |||
|description=CAGE_peak_5_at_Sox1_5end | |||
|id=chr8:12395500..12395511,+ | |||
|ontology_enrichment_celltype=CL:0000117!9.19e-16!23;CL:0000337!9.19e-16!23;CL:0002319!1.42e-14!43;CL:0000221!5.12e-14!44;CL:0000133!5.12e-14!44;CL:0000055!3.62e-11!50;CL:0000540!1.15e-10!33;CL:0000047!1.15e-10!33;CL:0000031!1.15e-10!33;CL:0000404!1.15e-10!33;CL:0002609!2.22e-08!6;CL:0000393!5.82e-08!39;CL:0000211!5.82e-08!39;CL:0002453!9.39e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,9.02e-20,43;CL:0000221,3.18e-19,44;CL:0000133,3.18e-19,44;CL:0000117,6.33e-19,23;CL:0000337,6.33e-19,23;CL:0002609,2.23e-18,6;CL:0000540,2.53e-12,33;CL:0000047,2.53e-12,33;CL:0000031,2.53e-12,33;CL:0000404,2.53e-12,33;CL:0002453,2.09e-11,8;CL:0002321,1.65e-10,70;CL:0002608,3.40e-10,3;CL:0000393,5.39e-10,39;CL:0000211,5.39e-10,39;CL:0002613,4.92e-09,3;CL:0000333,5.25e-09,10;CL:0000095,5.25e-09,10;CL:0000243,5.25e-09,10;CL:0000123,5.25e-09,10;CL:0000125,5.25e-09,10;CL:0000030,5.25e-09,10;CL:0000339,5.25e-09,10;CL:0000120,5.58e-09,3;CL:0000128,1.63e-07,6;CL:0000126,1.63e-07,6;CL:0000127,1.63e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.53e-32!73;UBERON:0005743!2.53e-32!73;UBERON:0000073!5.95e-31!75;UBERON:0001016!5.95e-31!75;UBERON:0001049!2.55e-28!52;UBERON:0005068!2.55e-28!52;UBERON:0006241!2.55e-28!52;UBERON:0007135!2.55e-28!52;UBERON:0000955!1.14e-27!50;UBERON:0006238!1.14e-27!50;UBERON:0002616!1.52e-26!49;UBERON:0000033!1.83e-24!63;UBERON:0003080!5.28e-23!40;UBERON:0002346!1.11e-22!71;UBERON:0003075!1.11e-22!71;UBERON:0007284!1.11e-22!71;UBERON:0003056!2.34e-22!49;UBERON:0004121!2.69e-22!102;UBERON:0000924!2.69e-22!102;UBERON:0006601!2.69e-22!102;UBERON:0002780!3.66e-22!39;UBERON:0001890!3.66e-22!39;UBERON:0006240!3.66e-22!39;UBERON:0002020!3.49e-16!34;UBERON:0002791!1.50e-14!29;UBERON:0003528!1.50e-14!29;UBERON:0001893!1.50e-14!29;UBERON:0007811!7.59e-14!86;UBERON:0000153!1.86e-11!94;UBERON:0000956!1.56e-09!21;UBERON:0001869!1.56e-09!21;UBERON:0000203!1.56e-09!21;UBERON:0001894!9.34e-09!10;UBERON:0006222!9.34e-09!10;UBERON:0001954!9.40e-09!7;UBERON:0003022!9.40e-09!7;UBERON:0002421!9.40e-09!7;UBERON:0000349!9.40e-09!7;UBERON:0002600!9.40e-09!7;UBERON:0000007!6.67e-07!8;UBERON:0003296!6.67e-07!8;UBERON:0010133!6.67e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.03e-27,73;UBERON:0001016,3.77e-26,75;UBERON:0000955,1.53e-22,47;UBERON:0006238,1.53e-22,47;UBERON:0002780,2.35e-22,39;UBERON:0001890,2.35e-22,39;UBERON:0006240,2.35e-22,39;UBERON:0003080,1.09e-21,40;UBERON:0002616,1.17e-20,46;UBERON:0001049,9.28e-20,52;UBERON:0005068,9.28e-20,52;UBERON:0006241,9.28e-20,52;UBERON:0007135,9.28e-20,52;UBERON:0004121,2.00e-19,95;UBERON:0000924,2.00e-19,95;UBERON:0006601,2.00e-19,95;UBERON:0003528,2.77e-19,29;UBERON:0002791,2.77e-19,29;UBERON:0001893,2.77e-19,29;UBERON:0000073,7.47e-19,54;UBERON:0002020,3.02e-18,34;UBERON:0003056,6.42e-17,49;UBERON:0002346,3.56e-15,64;UBERON:0003075,3.56e-15,64;UBERON:0007284,3.56e-15,64;UBERON:0001954,9.41e-15,7;UBERON:0003022,9.41e-15,7;UBERON:0002421,9.41e-15,7;UBERON:0000349,9.41e-15,7;UBERON:0002600,9.41e-15,7;UBERON:0000956,1.11e-14,21;UBERON:0001869,1.11e-14,21;UBERON:0000203,1.11e-14,21;UBERON:0010371,9.97e-13,73;UBERON:0002619,1.48e-09,17;UBERON:0000369,2.61e-09,5;UBERON:0002435,2.61e-09,5;UBERON:0000204,2.61e-09,5;UBERON:0010082,2.61e-09,5;UBERON:0010314,3.84e-09,92 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.19483016055474,1.31811709640683,0.972149495371417,1.25987779462826,2.87505128729943,0,0,0,0,0,0,2.83243045203437,1.5869729378161,2.53532561402472,0.338844532069132,0,0,0,0,1.19840044207362,1.15265491596466,4.97710139080693,4.05017814995072,4.83747411108179,0.571301968807607,0,14.8213867050094,14.4726661237537,12.8690630125403,0,0.638436690425939,0.768032666281217,2.76961204233407,3.29355516968675,1.56274011167028,0.837548997004143,0,0.45839474333043,0.294628585473668,1.56608848879013,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.585561594023094,0.628340120440365,0,0,0,0,0.898743836428936,0.915001205637253,3.14135880282161,0.521472960576829,0.511430914660661,2.49345653471472,1.29793010454206,0,0,0,0,0.520481771850815,0,0.540186389416048,0.150704817835715,0.272145996605311,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68231958851302,3.49875682089567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,0.234423373184406,0,0,0,0,0.215423397732799,0,0.222798674082394,0,0,0,0,4.81981974632711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,2.34079422240703,2.19909762430683,0.643011105094777,0.709360934569094,0.535106452806212,0.164549020602121,0.913394847343798,0,0,0,0,0,0,0,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38097570952153,0,0.515559547031063,0,0,1.35004500046361,0.45032120322422,0,0,1.3492355185943,0.798049746802062,1.02440163452481,0.486213434136588,0.628839487883947,0.183843508450014,0.666740183404846,0.412070114477788,0.64183841918363,0.505394423527595,0.25347929989024,1.13175804831646,0.37456602987953,0.320125762024346,0.229741875822453,0.476293691283074,0.231768651889711,0.964546102318525,0,0.294397840268795,0,0.70990322463735,0.238436189947321,0.726732083161643,0.188218760830661,0.592302255241736,0.365855945745545,0.263069711437843,0.135804113845862,1.68342681497322,0.237270036248348,0.394017929502254,0.409231043169689,0.619747364743864,0.192906610981141,0.749431733813838,0.233931608445408,0.644613162144895,0,0,0 | |||
|short_description=p5@Sox1 | |||
}} |
Latest revision as of 15:43, 1 October 2015
Short description: | p5@Sox1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Sox1_5end |
Coexpression cluster: | MCL_coexpression_mm9:184 |
Association with transcript: | -7bp_to_NM_009233, uc009kwa.2_5end |
EntrezGene: | Sox1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 9.02e-20 | 43 |
ectodermal cell | 3.18e-19 | 44 |
neurectodermal cell | 3.18e-19 | 44 |
CNS neuron (sensu Vertebrata) | 6.33e-19 | 23 |
neuroblast (sensu Vertebrata) | 6.33e-19 | 23 |
neuron of cerebral cortex | 2.23e-18 | 6 |
neuron | 2.53e-12 | 33 |
neuronal stem cell | 2.53e-12 | 33 |
neuroblast | 2.53e-12 | 33 |
electrically signaling cell | 2.53e-12 | 33 |
oligodendrocyte precursor cell | 2.09e-11 | 8 |
embryonic cell | 1.65e-10 | 70 |
hippocampal neuron | 3.40e-10 | 3 |
electrically responsive cell | 5.39e-10 | 39 |
electrically active cell | 5.39e-10 | 39 |
striatum neuron | 4.92e-09 | 3 |
migratory neural crest cell | 5.25e-09 | 10 |
neuron associated cell | 5.25e-09 | 10 |
glial cell (sensu Vertebrata) | 5.25e-09 | 10 |
neuron associated cell (sensu Vertebrata) | 5.25e-09 | 10 |
glial cell | 5.25e-09 | 10 |
glioblast | 5.25e-09 | 10 |
glioblast (sensu Vertebrata) | 5.25e-09 | 10 |
granule cell | 5.58e-09 | 3 |
oligodendrocyte | 1.63e-07 | 6 |
macroglial cell | 1.63e-07 | 6 |
astrocyte | 1.63e-07 | 6 |