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|is_obsolete=
|is_obsolete=
|located_in=
|located_in=
|name=auditory hair cell;;cochlear hair cell
|name=auditory hair cell
|namespace=cell;;efo
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0002227
|part_of=UBERON:0002227

Latest revision as of 16:31, 12 September 2014

Name:auditory hair cell
Namespace:FANTOM
Definition:"A mechanoreceptor cell located in the inner ear that is sensitive to auditory stimuli. The accessory sensory structures are arranged so that appropriate stimuli cause movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system." [MESH:A.08.663.650.250]
Xrefs:
links:
FMA:62364
Synonyms: "auditory receptor cell" EXACT []
"cochlear hair cell" EXACT []
"inner ear hair cell" EXACT [GO:0060119]
"inner ear receptor cell" EXACT [GO:0060119]
Comments:In mammals these cells are located in the organ of Corti.
Alt_id: CL:0000201


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000006(neuronal receptor cell),CL:0002374(ear hair cell),CL:0002491(auditory epithelial cell)
part_of:UBERON:0002227(spiral organ of cochlea)



Children


is a:CL:0000589 (cochlear inner hair cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Mouse (Mus musculus)

  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000202 (auditory hair cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.07e-86FFCP PHASE2:Mm9::chr6:36966723..36966734,-#_11fa8e49030c043265c7b5924e6ceeaep@chr6:36966723..36966734, -
3.07e-86FFCP PHASE2:Mm9::chr9:92087990..92087995,+#_11fa8e49030c043265c7b5924e6ceeaep3@Plscr5
3.07e-86FFCP PHASE2:Mm9::chr17:34185389..34185401,+#_11fa8e49030c043265c7b5924e6ceeaep8@Col11a2
3.07e-86FFCP PHASE1:Mm9::chr15:97828021..97828028,-#_11fa8e49030c043265c7b5924e6ceeaep@chr15:97828021..97828028, -
3.07e-86FFCP PHASE2:Mm9::chr11:94371110..94371111,-#_11fa8e49030c043265c7b5924e6ceeaep@chr11:94371110..94371111, -
3.07e-86FFCP PHASE1:Mm9::chr8:94283075..94283082,+#_11fa8e49030c043265c7b5924e6ceeaep@chr8:94283075..94283082, +
3.07e-86FFCP PHASE2:Mm9::chr17:15466888..15466898,-#_11fa8e49030c043265c7b5924e6ceeaep@chr17:15466888..15466898, -
3.07e-86FFCP PHASE2:Mm9::chr3:127520184..127520191,-#_11fa8e49030c043265c7b5924e6ceeaep@chr3:127520184..127520191, -
3.07e-86FFCP PHASE1:Mm9::chr2:12032746..12032751,-#_11fa8e49030c043265c7b5924e6ceeaep@chr2:12032746..12032751, -
3.07e-86FFCP PHASE2:Mm9::chr6:83129695..83129696,+#_11fa8e49030c043265c7b5924e6ceeaep24@Dctn1
3.07e-86FFCP PHASE1:Mm9::chr17:34185362..34185370,+#_11fa8e49030c043265c7b5924e6ceeaep10@Col11a2
3.07e-86FFCP PHASE2:Mm9::chr2:142907424..142907448,-#_11fa8e49030c043265c7b5924e6ceeaep@chr2:142907424..142907448, -
3.07e-86FFCP PHASE1:Mm9::chr6:64684505..64684512,+#_11fa8e49030c043265c7b5924e6ceeaep@chr6:64684505..64684512, +
3.07e-86FFCP PHASE1:Mm9::chr17:15466888..15466898,-#_11fa8e49030c043265c7b5924e6ceeaep@chr17:15466888..15466898, -
3.07e-86FFCP PHASE2:Mm9::chr11:114652018..114652020,+#_11fa8e49030c043265c7b5924e6ceeaep@chr11:114652018..114652020, +
3.07e-86FFCP PHASE1:Mm9::chr2:180335744..180335746,+#_11fa8e49030c043265c7b5924e6ceeaep@chr2:180335744..180335746, +
3.07e-86FFCP PHASE1:Mm9::chr5:72652671..72652676,+#_11fa8e49030c043265c7b5924e6ceeaep@chr5:72652671..72652676, +
3.07e-86FFCP PHASE2:Mm9::chr6:36966993..36966996,-#_11fa8e49030c043265c7b5924e6ceeaep@chr6:36966993..36966996, -
3.07e-86FFCP PHASE1:Mm9::chr3:127520184..127520191,-#_11fa8e49030c043265c7b5924e6ceeaep@chr3:127520184..127520191, -
3.07e-86FFCP PHASE1:Mm9::chr6:36966723..36966734,-#_11fa8e49030c043265c7b5924e6ceeaep@chr6:36966723..36966734, -
3.07e-86FFCP PHASE2:Mm9::chr9:87599703..87599714,-#_11fa8e49030c043265c7b5924e6ceeaep@chr9:87599703..87599714, -
3.07e-86FFCP PHASE2:Mm9::chr8:94283075..94283082,+#_11fa8e49030c043265c7b5924e6ceeaep@chr8:94283075..94283082, +
3.07e-86FFCP PHASE2:Mm9::chr6:64684505..64684512,+#_11fa8e49030c043265c7b5924e6ceeaep@chr6:64684505..64684512, +
3.07e-86FFCP PHASE1:Mm9::chr9:87599703..87599714,-#_11fa8e49030c043265c7b5924e6ceeaep@chr9:87599703..87599714, -
3.07e-86FFCP PHASE1:Mm9::chr17:34185378..34185383,+#_11fa8e49030c043265c7b5924e6ceeaep11@Col11a2
3.07e-86FFCP PHASE2:Mm9::chr17:34185343..34185356,+#_11fa8e49030c043265c7b5924e6ceeaep7@Col11a2
3.07e-86FFCP PHASE2:Mm9::chr15:91379135..91379143,-#_11fa8e49030c043265c7b5924e6ceeaep@chr15:91379135..91379143, -
3.07e-86FFCP PHASE1:Mm9::chr13:31171742..31171745,-#_11fa8e49030c043265c7b5924e6ceeaep@chr13:31171742..31171745, -
3.07e-86FFCP PHASE2:Mm9::chr19:10535924..10535927,-#_11fa8e49030c043265c7b5924e6ceeaep@chr19:10535924..10535927, -
3.07e-86FFCP PHASE1:Mm9::chr2:142906965..142906982,-#_11fa8e49030c043265c7b5924e6ceeaep@chr2:142906965..142906982, -
3.07e-86FFCP PHASE1:Mm9::chr2:53464193..53464197,+#_11fa8e49030c043265c7b5924e6ceeaep@chr2:53464193..53464197, +
3.07e-86FFCP PHASE1:Mm9::chr10:18246142..18246145,+#_11fa8e49030c043265c7b5924e6ceeaep@chr10:18246142..18246145, +
3.07e-86FFCP PHASE2:Mm9::chr2:53464193..53464197,+#_11fa8e49030c043265c7b5924e6ceeaep@chr2:53464193..53464197, +
3.07e-86FFCP PHASE1:Mm9::chr11:114652018..114652020,+#_11fa8e49030c043265c7b5924e6ceeaep@chr11:114652018..114652020, +
3.07e-86FFCP PHASE1:Mm9::chr6:36966993..36966996,-#_11fa8e49030c043265c7b5924e6ceeaep@chr6:36966993..36966996, -
3.07e-86FFCP PHASE2:Mm9::chr18:66033513..66033517,-#_11fa8e49030c043265c7b5924e6ceeaep@chr18:66033513..66033517, -
3.07e-86FFCP PHASE2:Mm9::chr4:106770202..106770208,+#_11fa8e49030c043265c7b5924e6ceeaep@chr4:106770202..106770208, +
3.07e-86FFCP PHASE2:Mm9::chr6:64684637..64684654,+#_11fa8e49030c043265c7b5924e6ceeaep@chr6:64684637..64684654, +
3.07e-86FFCP PHASE1:Mm9::chr6:64684637..64684654,+#_11fa8e49030c043265c7b5924e6ceeaep@chr6:64684637..64684654, +
3.07e-86FFCP PHASE2:Mm9::chr2:12032746..12032751,-#_11fa8e49030c043265c7b5924e6ceeaep@chr2:12032746..12032751, -
3.07e-86FFCP PHASE1:Mm9::chr17:34185389..34185401,+#_11fa8e49030c043265c7b5924e6ceeaep8@Col11a2
3.07e-86FFCP PHASE1:Mm9::chr18:66033513..66033517,-#_11fa8e49030c043265c7b5924e6ceeaep@chr18:66033513..66033517, -
3.07e-86FFCP PHASE2:Mm9::chr17:34185362..34185370,+#_11fa8e49030c043265c7b5924e6ceeaep10@Col11a2
3.07e-86FFCP PHASE1:Mm9::chr2:142907424..142907448,-#_11fa8e49030c043265c7b5924e6ceeaep@chr2:142907424..142907448, -
3.07e-86FFCP PHASE2:Mm9::chr13:31171742..31171745,-#_11fa8e49030c043265c7b5924e6ceeaep@chr13:31171742..31171745, -
3.07e-86FFCP PHASE1:Mm9::chr15:91379135..91379143,-#_11fa8e49030c043265c7b5924e6ceeaep@chr15:91379135..91379143, -
3.07e-86FFCP PHASE2:Mm9::chr16:55283394..55283400,-#_11fa8e49030c043265c7b5924e6ceeaep1@Zpld1
3.07e-86FFCP PHASE2:Mm9::chr15:97828021..97828028,-#_11fa8e49030c043265c7b5924e6ceeaep@chr15:97828021..97828028, -
3.07e-86FFCP PHASE2:Mm9::chr6:64684692..64684697,+#_11fa8e49030c043265c7b5924e6ceeaep@chr6:64684692..64684697, +
3.07e-86FFCP PHASE1:Mm9::chr6:64684692..64684697,+#_11fa8e49030c043265c7b5924e6ceeaep@chr6:64684692..64684697, +
3.07e-86FFCP PHASE2:Mm9::chr2:180335744..180335746,+#_11fa8e49030c043265c7b5924e6ceeaep@chr2:180335744..180335746, +
3.07e-86FFCP PHASE1:Mm9::chr16:55283394..55283400,-#_11fa8e49030c043265c7b5924e6ceeaep1@Zpld1
3.07e-86FFCP PHASE2:Mm9::chr10:18246142..18246145,+#_11fa8e49030c043265c7b5924e6ceeaep@chr10:18246142..18246145, +
3.07e-86FFCP PHASE2:Mm9::chr17:34185378..34185383,+#_11fa8e49030c043265c7b5924e6ceeaep11@Col11a2
3.07e-86FFCP PHASE2:Mm9::chr5:72652671..72652676,+#_11fa8e49030c043265c7b5924e6ceeaep@chr5:72652671..72652676, +
3.07e-86FFCP PHASE1:Mm9::chr4:106770202..106770208,+#_11fa8e49030c043265c7b5924e6ceeaep@chr4:106770202..106770208, +
3.07e-86FFCP PHASE1:Mm9::chr19:10535924..10535927,-#_11fa8e49030c043265c7b5924e6ceeaep@chr19:10535924..10535927, -
3.07e-86FFCP PHASE1:Mm9::chr17:34185343..34185356,+#_11fa8e49030c043265c7b5924e6ceeaep7@Col11a2
3.07e-86FFCP PHASE2:Mm9::chr2:142906965..142906982,-#_11fa8e49030c043265c7b5924e6ceeaep@chr2:142906965..142906982, -
3.07e-86FFCP PHASE1:Mm9::chr6:83129695..83129696,+#_11fa8e49030c043265c7b5924e6ceeaep24@Dctn1
3.07e-86FFCP PHASE1:Mm9::chr11:94371110..94371111,-#_11fa8e49030c043265c7b5924e6ceeaep@chr11:94371110..94371111, -
3.07e-86FFCP PHASE1:Mm9::chr9:92087990..92087995,+#_11fa8e49030c043265c7b5924e6ceeaep3@Plscr5
2.74e-44FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_4094126718b698ad3dd1a47764dbdd97p@chr2:53464168..53464175, +
2.74e-44FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_4094126718b698ad3dd1a47764dbdd97p@chr1:93235253..93235264, +
2.74e-44FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_4094126718b698ad3dd1a47764dbdd97p@chr5:3909290..3909299, +
2.74e-44FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_4094126718b698ad3dd1a47764dbdd97p10@Sec11a
2.74e-44FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_4094126718b698ad3dd1a47764dbdd97p@chr5:28035962..28035983, +
2.74e-44FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_4094126718b698ad3dd1a47764dbdd97p@chr13:78257491..78257498, +
2.74e-44FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_4094126718b698ad3dd1a47764dbdd97p@chr3:154459246..154459253, +
2.74e-44FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_4094126718b698ad3dd1a47764dbdd97p@chr9:56208792..56208814, -
2.74e-44FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_4094126718b698ad3dd1a47764dbdd97p3@Fanca
2.74e-44FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_4094126718b698ad3dd1a47764dbdd97p3@Ptprq
2.74e-44FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_4094126718b698ad3dd1a47764dbdd97p@chr8:13414289..13414295, +
2.74e-44FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_4094126718b698ad3dd1a47764dbdd97p@chr12:13508015..13508019, +
2.74e-44FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_4094126718b698ad3dd1a47764dbdd97p1@Tmprss3
2.74e-44FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_4094126718b698ad3dd1a47764dbdd97p@chr13:43699228..43699239, +
2.74e-44FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_4094126718b698ad3dd1a47764dbdd97p@chr2:53464168..53464175, +
2.74e-44FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_4094126718b698ad3dd1a47764dbdd97p@chr11:114603036..114603048, +
2.74e-44FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_4094126718b698ad3dd1a47764dbdd97p7@Pkn3
2.74e-44FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_4094126718b698ad3dd1a47764dbdd97p4@Kncn
2.74e-44FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_4094126718b698ad3dd1a47764dbdd97p@chr14:31283085..31283097, -
2.74e-44FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_4094126718b698ad3dd1a47764dbdd97p@chr3:100724698..100724706, +
2.74e-44FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_4094126718b698ad3dd1a47764dbdd97p@chr2:170417150..170417155, -
2.74e-44FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_4094126718b698ad3dd1a47764dbdd97p9@Otof
2.74e-44FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_4094126718b698ad3dd1a47764dbdd97p4@Kncn
2.74e-44FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_4094126718b698ad3dd1a47764dbdd97p@chr15:89215306..89215315, +
2.74e-44FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_4094126718b698ad3dd1a47764dbdd97p@chr17:13983095..13983100, +
2.74e-44FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_4094126718b698ad3dd1a47764dbdd97p2@Gpr152
2.74e-44FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_4094126718b698ad3dd1a47764dbdd97p9@Ankrd24
2.74e-44FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_4094126718b698ad3dd1a47764dbdd97p@chr3:154459184..154459195, +
2.74e-44FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_4094126718b698ad3dd1a47764dbdd97p@chr6:113251614..113251623, +
2.74e-44FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_4094126718b698ad3dd1a47764dbdd97p@chr18:38104702..38104718, -
2.74e-44FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_4094126718b698ad3dd1a47764dbdd97p@chr4:63079735..63079745, -
2.74e-44FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_4094126718b698ad3dd1a47764dbdd97p@chr1:182528388..182528403, +
2.74e-44FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_4094126718b698ad3dd1a47764dbdd97p@chr2:152453066..152453075, -
2.74e-44FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_4094126718b698ad3dd1a47764dbdd97p@chr15:65641741..65641748, +
2.74e-44FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_4094126718b698ad3dd1a47764dbdd97p@chr1:194818647..194818660, -
2.74e-44FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_4094126718b698ad3dd1a47764dbdd97p4@BC030867
2.74e-44FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_4094126718b698ad3dd1a47764dbdd97p@chr6:113251570..113251578, +
2.74e-44FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_4094126718b698ad3dd1a47764dbdd97p@chr5:3909290..3909299, +

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