CL:0000501: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=granulosa cell | |name=granulosa cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:34, 12 September 2014
| Name: | granulosa cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A supporting cell for the developing female gamete in the ovary of mammals. They develop from the coelomic epithelial cells of the gonadal ridge. Granulosa cells form a single layer around the mammalian oocyte in the primordial ovarian follicle and advance to form a multilayered cumulus oophorus surrounding the ovum in the Graafian follicle. The major functions of granulosa cells include the production of steroids and LH receptors." [MESH:A.05.360.319.114.630.535.200] | ||
| Xrefs: |
| ||
| Synonyms: | "granulosa cell of ovary" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000174(steroid hormone secreting cell),CL:0002174(follicular cell of ovary) |
|---|
Children
| derives from: | FF:0102285 (granulosa cell line sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10624-108H3 (granulosa cell tumor cell line:KGN)
Mouse (Mus musculus)
- 10624-108H3 (granulosa cell tumor cell line:KGN)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000501 (granulosa cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.66e-66 | FFCP PHASE2:Hg19::chr1:248067410..248067413,+#_47cd29ac5e38496c48e2f5fd7085a77e | p@chr1:248067410..248067413, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr1:248067410..248067413,+#_47cd29ac5e38496c48e2f5fd7085a77e | p@chr1:248067410..248067413, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr2:227587084..227587105,+#_84877510a455ccbedaa5b4d6566d8c4c | p@chr2:227587084..227587105, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr2:227587084..227587105,+#_84877510a455ccbedaa5b4d6566d8c4c | p@chr2:227587084..227587105, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr12:78359973..78359982,+#_9ad56f36d3143c94eca9625171e36178 | p34@NAV3 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr12:78359973..78359982,+#_9ad56f36d3143c94eca9625171e36178 | p34@NAV3 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr11:77282391..77282402,+#_9dafebf019e9e524d78c8f6ec25e517b | p@chr11:77282391..77282402, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr11:77282391..77282402,+#_9dafebf019e9e524d78c8f6ec25e517b | p@chr11:77282391..77282402, + |
| 2.21e-40 | FFCP PHASE2:Hg19::chr9:124044161..124044173,+#_d84423f5303d23c62b85aeb799a53297 | p@chr9:124044161..124044173, + |
| 2.21e-40 | FFCP PHASE1:Hg19::chr9:124044161..124044173,+#_d84423f5303d23c62b85aeb799a53297 | p@chr9:124044161..124044173, + |
| 3.61e-34 | FFCP PHASE1:Hg19::chr1:185853036..185853046,+#_1d3636ae16fc0e8273fe7068bd3f5b5c | p@chr1:185853036..185853046, + |
| 3.61e-34 | FFCP PHASE2:Hg19::chr1:185853036..185853046,+#_1d3636ae16fc0e8273fe7068bd3f5b5c | p@chr1:185853036..185853046, + |
| 5.05e-34 | FFCP PHASE1:Hg19::chr1:248080895..248080906,+#_23a499ee374415b78289ce75fe426532 | p@chr1:248080895..248080906, + |
| 5.05e-34 | FFCP PHASE1:Hg19::chr4:138999555..138999575,-#_23a499ee374415b78289ce75fe426532 | p@chr4:138999555..138999575, - |
| 5.05e-34 | FFCP PHASE2:Hg19::chr1:248080895..248080906,+#_23a499ee374415b78289ce75fe426532 | p@chr1:248080895..248080906, + |
| 5.05e-34 | FFCP PHASE1:Hg19::chr1:186116540..186116557,+#_23a499ee374415b78289ce75fe426532 | p@chr1:186116540..186116557, + |
| 5.05e-34 | FFCP PHASE2:Hg19::chr4:138999555..138999575,-#_23a499ee374415b78289ce75fe426532 | p@chr4:138999555..138999575, - |
| 5.05e-34 | FFCP PHASE2:Hg19::chr1:186116540..186116557,+#_23a499ee374415b78289ce75fe426532 | p@chr1:186116540..186116557, + |
| 7.06e-34 | FFCP PHASE1:Hg19::chr1:185720104..185720113,+#_022b59984677a7b0de98938e754e26cf | p@chr1:185720104..185720113, + |
| 7.06e-34 | FFCP PHASE2:Hg19::chr1:185720104..185720113,+#_022b59984677a7b0de98938e754e26cf | p@chr1:185720104..185720113, + |
| 9.99e-30 | FFCP PHASE2:Hg19::chr5:145427166..145427178,+#_924d0aa15b99ddbe47b99e62b4f14df5 | p@chr5:145427166..145427178, + |
| 9.99e-30 | FFCP PHASE1:Hg19::chr5:145427166..145427178,+#_924d0aa15b99ddbe47b99e62b4f14df5 | p@chr5:145427166..145427178, + |
| 1.33e-29 | FFCP PHASE1:Hg19::chr3:111633072..111633073,+#_ab9c120c26256af1688ebdddcd0ecc89 | p@chr3:111633072..111633073, + |
| 1.33e-29 | FFCP PHASE2:Hg19::chr9:32783532..32783551,+#_ab9c120c26256af1688ebdddcd0ecc89 | p2@TMEM215 |
| 1.33e-29 | FFCP PHASE2:Hg19::chr3:111633072..111633073,+#_ab9c120c26256af1688ebdddcd0ecc89 | p@chr3:111633072..111633073, + |
| 1.33e-29 | FFCP PHASE1:Hg19::chr18:19748482..19748490,-#_ab9c120c26256af1688ebdddcd0ecc89 | p@chr18:19748482..19748490, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr9:32783532..32783551,+#_ab9c120c26256af1688ebdddcd0ecc89 | p2@TMEM215 |
| 1.33e-29 | FFCP PHASE2:Hg19::chr18:19748482..19748490,-#_ab9c120c26256af1688ebdddcd0ecc89 | p@chr18:19748482..19748490, - |
| 2.37e-29 | FFCP PHASE2:Hg19::chr11:120110546..120110551,-#_678d8bfcbc7593eb013058ec0ce2694a | p@chr11:120110546..120110551, - |
| 2.37e-29 | FFCP PHASE1:Hg19::chr8:11534512..11534519,+#_678d8bfcbc7593eb013058ec0ce2694a | p7@GATA4 |
| 2.37e-29 | FFCP PHASE2:Hg19::chr6:5261661..5261664,-#_678d8bfcbc7593eb013058ec0ce2694a | p7@LYRM4 |
| 2.37e-29 | FFCP PHASE2:Hg19::chr11:46848363..46848374,-#_678d8bfcbc7593eb013058ec0ce2694a | p6@CKAP5 |
| 2.37e-29 | FFCP PHASE2:Hg19::chr8:11534512..11534519,+#_678d8bfcbc7593eb013058ec0ce2694a | p7@GATA4 |
| 2.37e-29 | FFCP PHASE1:Hg19::chr11:120110546..120110551,-#_678d8bfcbc7593eb013058ec0ce2694a | p@chr11:120110546..120110551, - |
| 2.37e-29 | FFCP PHASE1:Hg19::chr6:5261661..5261664,-#_678d8bfcbc7593eb013058ec0ce2694a | p7@LYRM4 |
| 2.37e-29 | FFCP PHASE1:Hg19::chr11:46848363..46848374,-#_678d8bfcbc7593eb013058ec0ce2694a | p6@CKAP5 |
| 3.16e-29 | FFCP PHASE1:Hg19::chr2:49381628..49381639,-#_d94d256d0375fe080a5047bd1052fc4b | p2@FSHR |
| 3.16e-29 | FFCP PHASE2:Hg19::chr2:49381628..49381639,-#_d94d256d0375fe080a5047bd1052fc4b | p2@FSHR |
| 2.16e-26 | FFCP PHASE1:Hg19::chr11:46887017..46887024,-#_0116f02832e4ffc2c896ccb5f44dac65 | p@chr11:46887017..46887024, - |
| 2.16e-26 | FFCP PHASE2:Hg19::chr11:46887017..46887024,-#_0116f02832e4ffc2c896ccb5f44dac65 | p@chr11:46887017..46887024, - |
| 3.58e-26 | FFCP PHASE1:Hg19::chr17:6374648..6374688,-#_f41141538d902162c73a5d5fd366f78e | p@chr17:6374648..6374688, - |
| 3.58e-26 | FFCP PHASE2:Hg19::chr17:6374648..6374688,-#_f41141538d902162c73a5d5fd366f78e | p@chr17:6374648..6374688, - |
| 1.26e-25 | FFCP PHASE1:Hg19::chr5:145340760..145340764,+#_8ec7c705ed225b85f3c73cc6cf649bb6 | p@chr5:145340760..145340764, + |
| 1.26e-25 | FFCP PHASE2:Hg19::chr5:145340760..145340764,+#_8ec7c705ed225b85f3c73cc6cf649bb6 | p@chr5:145340760..145340764, + |
| 1.34e-23 | FFCP PHASE1:Hg19::chr5:83644408..83644410,-#_e0f663952b062f22595e9edfe5813b94 | p@chr5:83644408..83644410, - |
| 1.34e-23 | FFCP PHASE2:Hg19::chr5:83644408..83644410,-#_e0f663952b062f22595e9edfe5813b94 | p@chr5:83644408..83644410, - |
| 1.67e-23 | FFCP PHASE1:Hg19::chr3:197026018..197026029,-#_cab4a601933c7360740597d1608b361b | p34@DLG1 |
| 1.67e-23 | FFCP PHASE2:Hg19::chr3:197026018..197026029,-#_cab4a601933c7360740597d1608b361b | p34@DLG1 |
| 3.28e-23 | FFCP PHASE1:Hg19::chr11:1580303..1580327,-#_0c01279392cc78ab23eaa943a1457a9d | p@chr11:1580303..1580327, - |
| 3.28e-23 | FFCP PHASE2:Hg19::chr11:1580303..1580327,-#_0c01279392cc78ab23eaa943a1457a9d | p@chr11:1580303..1580327, - |
| 4.1e-23 | FFCP PHASE2:Hg19::chr2:204534759..204534765,+#_1d703ff6f195dc4fc90d6978853daf3a | p@chr2:204534759..204534765, + |
| 4.1e-23 | FFCP PHASE1:Hg19::chr2:204534759..204534765,+#_1d703ff6f195dc4fc90d6978853daf3a | p@chr2:204534759..204534765, + |
| 5.13e-23 | FFCP PHASE1:Hg19::chr10:45496353..45496379,-#_8e3709ab2117b46ea636dbf54153784b | p6@C10orf25 |
| 5.13e-23 | FFCP PHASE2:Hg19::chr10:45496353..45496379,-#_8e3709ab2117b46ea636dbf54153784b | p6@C10orf25 |
| 1.88e-21 | FFCP PHASE2:Hg19::chr3:96336938..96336956,-#_61322040c8f1f0afe737743260dafa15 | p@chr3:96336938..96336956, - |
| 1.88e-21 | FFCP PHASE1:Hg19::chr3:96336938..96336956,-#_61322040c8f1f0afe737743260dafa15 | p@chr3:96336938..96336956, - |
| 2.3e-21 | FFCP PHASE2:Hg19::chr3:87004049..87004053,-#_8964e1f6be7e7451b3fafb642cfa2179 | p@chr3:87004049..87004053, - |
| 2.3e-21 | FFCP PHASE1:Hg19::chr3:87004049..87004053,-#_8964e1f6be7e7451b3fafb642cfa2179 | p@chr3:87004049..87004053, - |
| 2.82e-21 | FFCP PHASE1:Hg19::chr12:78359984..78359998,+#_a254cafe5dfbebe839eee5a8cfca6254 | p19@NAV3 |
| 2.82e-21 | FFCP PHASE1:Hg19::chr1:225962665..225962674,+#_a254cafe5dfbebe839eee5a8cfca6254 | p@chr1:225962665..225962674, + |
| 2.82e-21 | FFCP PHASE2:Hg19::chr1:225962665..225962674,+#_a254cafe5dfbebe839eee5a8cfca6254 | p@chr1:225962665..225962674, + |
| 2.82e-21 | FFCP PHASE2:Hg19::chr12:78359984..78359998,+#_a254cafe5dfbebe839eee5a8cfca6254 | p19@NAV3 |
| 5.16e-21 | FFCP PHASE1:Hg19::chr11:503354..503369,+#_22f7a49134497c72c8da35d51326160f | p@chr11:503354..503369, + |
| 5.16e-21 | FFCP PHASE2:Hg19::chr11:503354..503369,+#_22f7a49134497c72c8da35d51326160f | p@chr11:503354..503369, + |
| 1.08e-19 | FFCP PHASE2:Hg19::chr12:78359999..78360035,+#_9536e148840e35d4ec3dec1c66aba727 | p13@NAV3 |
| 1.08e-19 | FFCP PHASE1:Hg19::chr12:78359999..78360035,+#_9536e148840e35d4ec3dec1c66aba727 | p13@NAV3 |
| 1.3e-19 | FFCP PHASE2:Hg19::chr3:138666029..138666038,-#_59d1c68e3a0bc5bac8a320a230e85943 | p8@FOXL2 |
| 1.3e-19 | FFCP PHASE1:Hg19::chr3:138666029..138666038,-#_59d1c68e3a0bc5bac8a320a230e85943 | p8@FOXL2 |
| 2.25e-19 | FFCP PHASE1:Hg19::chr1:185880819..185880830,+#_1f53ff1f7955573a4340fdabac3810dd | p@chr1:185880819..185880830, + |
| 2.25e-19 | FFCP PHASE2:Hg19::chr1:185880819..185880830,+#_1f53ff1f7955573a4340fdabac3810dd | p@chr1:185880819..185880830, + |
| 2.71e-19 | FFCP PHASE1:Hg19::chr10:47081891..47081936,+#_94b91dad1e21c6d82ef6b3a76b09452c | p@chr10:47081891..47081936, + |
| 2.71e-19 | FFCP PHASE1:Hg19::chr13:45694574..45694578,+#_94b91dad1e21c6d82ef6b3a76b09452c | p6@GTF2F2 |
| 2.71e-19 | FFCP PHASE2:Hg19::chr4:40848340..40848344,-#_94b91dad1e21c6d82ef6b3a76b09452c | p@chr4:40848340..40848344, - |
| 2.71e-19 | FFCP PHASE1:Hg19::chr3:69442476..69442481,-#_94b91dad1e21c6d82ef6b3a76b09452c | p@chr3:69442476..69442481, - |
| 2.71e-19 | FFCP PHASE2:Hg19::chr10:47081891..47081936,+#_94b91dad1e21c6d82ef6b3a76b09452c | p@chr10:47081891..47081936, + |
| 2.71e-19 | FFCP PHASE2:Hg19::chr13:45694574..45694578,+#_94b91dad1e21c6d82ef6b3a76b09452c | p6@GTF2F2 |
| 2.71e-19 | FFCP PHASE2:Hg19::chr3:69442476..69442481,-#_94b91dad1e21c6d82ef6b3a76b09452c | p@chr3:69442476..69442481, - |
| 2.71e-19 | FFCP PHASE1:Hg19::chr15:80843472..80843480,+#_94b91dad1e21c6d82ef6b3a76b09452c | p22@ARNT2 |
| 2.71e-19 | FFCP PHASE1:Hg19::chr4:40848340..40848344,-#_94b91dad1e21c6d82ef6b3a76b09452c | p@chr4:40848340..40848344, - |
| 2.71e-19 | FFCP PHASE2:Hg19::chr15:80843472..80843480,+#_94b91dad1e21c6d82ef6b3a76b09452c | p22@ARNT2 |
| 3.25e-19 | FFCP PHASE1:Hg19::chr18:10979606..10979617,-#_5293471b760ade75302e04a22243af10 | p@chr18:10979606..10979617, - |
| 3.25e-19 | FFCP PHASE2:Hg19::chr18:10979606..10979617,-#_5293471b760ade75302e04a22243af10 | p@chr18:10979606..10979617, - |
| 4.69e-19 | FFCP PHASE1:Hg19::chr11:29450724..29450728,+#_fee80a739370e28a61a74ef03424c40d | p@chr11:29450724..29450728, + |
| 4.69e-19 | FFCP PHASE2:Hg19::chr11:29450724..29450728,+#_fee80a739370e28a61a74ef03424c40d | p@chr11:29450724..29450728, + |
| 5.26e-18 | FFCP PHASE1:Hg19::chr1:186159161..186159177,+#_a19d685480a2a73291e40c0bb9202a58 | p@chr1:186159161..186159177, + |
| 5.26e-18 | FFCP PHASE2:Hg19::chr1:186159161..186159177,+#_a19d685480a2a73291e40c0bb9202a58 | p@chr1:186159161..186159177, + |
| 6.23e-18 | FFCP PHASE2:Hg19::chr15:74220226..74220237,-#_2ec75ad8bc706e09da056a73346f9f21 | p6@LOC100287616 |
| 6.23e-18 | FFCP PHASE2:Hg19::chr3:197640146..197640157,-#_2ec75ad8bc706e09da056a73346f9f21 | p7@IQCG |
| 6.23e-18 | FFCP PHASE1:Hg19::chr15:74220226..74220237,-#_2ec75ad8bc706e09da056a73346f9f21 | p6@LOC100287616 |
| 6.23e-18 | FFCP PHASE1:Hg19::chr3:197640146..197640157,-#_2ec75ad8bc706e09da056a73346f9f21 | p7@IQCG |
| 7.37e-18 | FFCP PHASE1:Hg19::chr20:2795626..2795639,+#_8d371027c5c301237df502775656f309 | p1@C20orf141, p1@TMEM239 |
| 7.37e-18 | FFCP PHASE2:Hg19::chr20:2795626..2795639,+#_8d371027c5c301237df502775656f309 | p1@C20orf141, p1@TMEM239 |
| 7.37e-18 | FFCP PHASE1:Hg19::chr5:14231969..14231971,+#_8d371027c5c301237df502775656f309 | p@chr5:14231969..14231971, + |
| 7.37e-18 | FFCP PHASE2:Hg19::chr5:14231969..14231971,+#_8d371027c5c301237df502775656f309 | p@chr5:14231969..14231971, + |
| 1.03e-17 | FFCP PHASE1:Hg19::chr7:45928011..45928026,+#_a9560aa145c3a1dd05bf9f1f01a38f82 | p4@IGFBP1 |
| 1.03e-17 | FFCP PHASE2:Hg19::chr7:45928011..45928026,+#_a9560aa145c3a1dd05bf9f1f01a38f82 | p4@IGFBP1 |
| 1.22e-17 | FFCP PHASE1:Hg19::chr3:138666453..138666470,+#_143e3b8de90c9e28ab99e4b6664718ea | p4@C3orf72 |
| 1.22e-17 | FFCP PHASE2:Hg19::chr3:138666453..138666470,+#_143e3b8de90c9e28ab99e4b6664718ea | p4@C3orf72 |
| 1.04e-16 | FFCP PHASE1:Hg19::chr3:197026004..197026017,-#_10f6f5068c3ce0361bb3c8a5a46dca0e | p22@DLG1 |
| 1.04e-16 | FFCP PHASE2:Hg19::chr3:197026004..197026017,-#_10f6f5068c3ce0361bb3c8a5a46dca0e | p22@DLG1 |
