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|located_in=
|located_in=
|name=epithelial cell of cervix
|name=epithelial cell of cervix
|namespace=cell
|namespace=FANTOM
|obo_creation_date=2011-02-24T08:20:08Z
|obo_creation_date=2011-02-24T08:20:08Z
|part_of=UBERON:0000002;;UBERON:0004801
|part_of=UBERON:0000002;;UBERON:0004801

Latest revision as of 16:43, 12 September 2014

Name:epithelial cell of cervix
Namespace:FANTOM
Definition:"An epithelial cell of the cervix." [GOC:tfm]
Synonyms: "cervical canal epithelial cell" EXACT [GOC:tfm]
"cervical canal of uterus epithelial cell" EXACT [GOC:tfm]
"cervix epithelial cell" EXACT [GOC:tfm]
"cervix of uterus epithelial cell" EXACT [GOC:tfm]
"epithelial cell of cervical canal" EXACT [GOC:tfm]
"epithelial cell of cervical canal of uterus" EXACT [GOC:tfm]
"epithelial cell of cervix of uterus" EXACT [GOC:tfm]
"epithelial cell of neck of uterus" EXACT [GOC:tfm]
"epithelial cell of uterine cervix" EXACT [GOC:tfm]
"neck of uterus epithelial cell" EXACT [GOC:tfm]
"uterine cervix epithelial cell" EXACT [GOC:tfm]
Created by:tmeehan
Creation date:2011-02-24T08:20:08Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000066(epithelial cell),CL:0002371(somatic cell)
part_of:UBERON:0000002(uterine cervix),UBERON:0004801(cervix epithelium)



Children


is a:FF:10431-106D8 (epidermoid carcinoma cell line:Ca Ski),FF:10589-108D4 (argyrophil small cell carcinoma cell line:TC-YIK)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
  • 10589-108D4 (argyrophil small cell carcinoma cell line:TC-YIK)

Mouse (Mus musculus)

  • 10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
  • 10589-108D4 (argyrophil small cell carcinoma cell line:TC-YIK)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002535 (epithelial cell of cervix), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.99e-131FFCP PHASE2:Hg19::chr14:104394868..104394874,+#_24fcdb4caea10c9af800c9ee8a2bb468p5@TDRD9
8.99e-131FFCP PHASE1:Hg19::chr14:104394868..104394874,+#_24fcdb4caea10c9af800c9ee8a2bb468p5@TDRD9
5.68e-99FFCP PHASE1:Hg19::chr17:34838949..34838959,-#_19326eb9616ad6f29f6c1f2a0220e75ep@chr17:34838949..34838959, -
5.68e-99FFCP PHASE2:Hg19::chr17:34838949..34838959,-#_19326eb9616ad6f29f6c1f2a0220e75ep@chr17:34838949..34838959, -
1.55e-98FFCP PHASE1:Hg19::chr22:44377129..44377137,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr22:44377129..44377137, +
1.55e-98FFCP PHASE2:Hg19::chr6:49467576..49467583,+#_57c29b5b2555c5f03a8b47a182e1721fp5@GLYATL3
1.55e-98FFCP PHASE2:Hg19::chr8:41485037..41485047,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr8:41485037..41485047, -
1.55e-98FFCP PHASE2:Hg19::chr17:32314322..32314327,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr17:32314322..32314327, -
1.55e-98FFCP PHASE1:Hg19::chr20:20392704..20392711,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr20:20392704..20392711, -
1.55e-98FFCP PHASE1:Hg19::chr11:2439293..2439304,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr11:2439293..2439304, -
1.55e-98FFCP PHASE2:Hg19::chr3:55205086..55205090,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr3:55205086..55205090, -
1.55e-98FFCP PHASE2:Hg19::chr6:39290815..39290820,-#_57c29b5b2555c5f03a8b47a182e1721fp6@KCNK16
1.55e-98FFCP PHASE1:Hg19::chr6:49467646..49467657,+#_57c29b5b2555c5f03a8b47a182e1721fp1@GLYATL3
1.55e-98FFCP PHASE1:Hg19::chr8:41485201..41485208,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr8:41485201..41485208, -
1.55e-98FFCP PHASE1:Hg19::chr1:70826186..70826193,-#_57c29b5b2555c5f03a8b47a182e1721fp4@ENST00000413943
1.55e-98FFCP PHASE1:Hg19::chr14:23465559..23465575,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr14:23465559..23465575, -
1.55e-98FFCP PHASE1:Hg19::chr12:131117194..131117202,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr12:131117194..131117202, -
1.55e-98FFCP PHASE2:Hg19::chr8:121054330..121054333,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr8:121054330..121054333, -
1.55e-98FFCP PHASE2:Hg19::chr19:16838056..16838070,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr19:16838056..16838070, +
1.55e-98FFCP PHASE1:Hg19::chr20:21918433..21918444,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr20:21918433..21918444, +
1.55e-98FFCP PHASE1:Hg19::chr17:27892902..27892907,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr17:27892902..27892907, +
1.55e-98FFCP PHASE2:Hg19::chr20:21918392..21918404,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr20:21918392..21918404, +
1.55e-98FFCP PHASE2:Hg19::chr11:2436040..2436051,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr11:2436040..2436051, -
1.55e-98FFCP PHASE1:Hg19::chr2:182548440..182548448,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr2:182548440..182548448, -
1.55e-98FFCP PHASE1:Hg19::chr11:79742692..79742706,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr11:79742692..79742706, +
1.55e-98FFCP PHASE2:Hg19::chr8:41508303..41508308,-#_57c29b5b2555c5f03a8b47a182e1721fp2@NKX6-3
1.55e-98FFCP PHASE2:Hg19::chr12:131117116..131117123,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr12:131117116..131117123, -
1.55e-98FFCP PHASE1:Hg19::chr8:121056349..121056360,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr8:121056349..121056360, -
1.55e-98FFCP PHASE1:Hg19::chr5:40984132..40984133,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr5:40984132..40984133, +
1.55e-98FFCP PHASE1:Hg19::chr20:43726566..43726571,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr20:43726566..43726571, +
1.55e-98FFCP PHASE2:Hg19::chr17:27892945..27892952,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr17:27892945..27892952, +
1.55e-98FFCP PHASE1:Hg19::chr11:2436019..2436030,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr11:2436019..2436030, -
1.55e-98FFCP PHASE2:Hg19::chr8:121062548..121062551,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr8:121062548..121062551, -
1.55e-98FFCP PHASE1:Hg19::chr2:9059355..9059366,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr2:9059355..9059366, -
1.55e-98FFCP PHASE2:Hg19::chr19:7184828..7184838,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr19:7184828..7184838, -
1.55e-98FFCP PHASE1:Hg19::chr9:35237473..35237478,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr9:35237473..35237478, +
1.55e-98FFCP PHASE1:Hg19::chr8:41484957..41484961,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr8:41484957..41484961, -
1.55e-98FFCP PHASE1:Hg19::chr6:39290499..39290502,-#_57c29b5b2555c5f03a8b47a182e1721fp8@KCNK16
1.55e-98FFCP PHASE1:Hg19::chr8:22001308..22001310,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr8:22001308..22001310, -
1.55e-98FFCP PHASE1:Hg19::chr1:54417667..54417685,+#_57c29b5b2555c5f03a8b47a182e1721fp9@LRRC42
1.55e-98FFCP PHASE1:Hg19::chr17:26911596..26911605,-#_57c29b5b2555c5f03a8b47a182e1721fp8@SPAG5
1.55e-98FFCP PHASE2:Hg19::chr17:39755914..39755961,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr17:39755914..39755961, -
1.55e-98FFCP PHASE1:Hg19::chr18:74350663..74350688,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr18:74350663..74350688, -
1.55e-98FFCP PHASE2:Hg19::chr11:2428348..2428358,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr11:2428348..2428358, -
1.55e-98FFCP PHASE1:Hg19::chr20:43727212..43727217,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr20:43727212..43727217, -
1.55e-98FFCP PHASE2:Hg19::chr6:49467630..49467640,+#_57c29b5b2555c5f03a8b47a182e1721fp3@GLYATL3
1.55e-98FFCP PHASE2:Hg19::chr8:41485173..41485181,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr8:41485173..41485181, -
1.55e-98FFCP PHASE2:Hg19::chr17:32314379..32314387,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr17:32314379..32314387, -
1.55e-98FFCP PHASE2:Hg19::chr7:127258120..127258138,-#_57c29b5b2555c5f03a8b47a182e1721fp3@PAX4
1.55e-98FFCP PHASE1:Hg19::chr6:49467678..49467693,+#_57c29b5b2555c5f03a8b47a182e1721fp2@GLYATL3
1.55e-98FFCP PHASE1:Hg19::chr9:91077381..91077392,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr9:91077381..91077392, +
1.55e-98FFCP PHASE1:Hg19::chr8:41485217..41485222,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr8:41485217..41485222, -
1.55e-98FFCP PHASE2:Hg19::chr6:20705180..20705181,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr6:20705180..20705181, +
1.55e-98FFCP PHASE2:Hg19::chr20:20392704..20392711,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr20:20392704..20392711, -
1.55e-98FFCP PHASE2:Hg19::chr8:121056304..121056311,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr8:121056304..121056311, -
1.55e-98FFCP PHASE1:Hg19::chr20:21918450..21918454,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr20:21918450..21918454, +
1.55e-98FFCP PHASE1:Hg19::chr17:27892922..27892925,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr17:27892922..27892925, +
1.55e-98FFCP PHASE1:Hg19::chr22:32555214..32555221,-#_57c29b5b2555c5f03a8b47a182e1721fp2@C22orf42
1.55e-98FFCP PHASE1:Hg19::chr12:14849447..14849450,-#_57c29b5b2555c5f03a8b47a182e1721fp7@GUCY2C
1.55e-98FFCP PHASE1:Hg19::chr8:121056549..121056554,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr8:121056549..121056554, -
1.55e-98FFCP PHASE2:Hg19::chr20:21918433..21918444,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr20:21918433..21918444, +
1.55e-98FFCP PHASE2:Hg19::chr11:2436082..2436085,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr11:2436082..2436085, -
1.55e-98FFCP PHASE1:Hg19::chr17:79225428..79225433,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr17:79225428..79225433, -
1.55e-98FFCP PHASE2:Hg19::chr14:93389079..93389083,+#_57c29b5b2555c5f03a8b47a182e1721fp24@CHGA
1.55e-98FFCP PHASE1:Hg19::chr2:182548451..182548457,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr2:182548451..182548457, -
1.55e-98FFCP PHASE2:Hg19::chr6:129597668..129597672,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr6:129597668..129597672, +
1.55e-98FFCP PHASE2:Hg19::chr12:131117129..131117135,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr12:131117129..131117135, -
1.55e-98FFCP PHASE2:Hg19::chr9:35237460..35237466,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr9:35237460..35237466, +
1.55e-98FFCP PHASE2:Hg19::chr8:33464773..33464782,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr8:33464773..33464782, +
1.55e-98FFCP PHASE2:Hg19::chr4:22737597..22737604,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr4:22737597..22737604, +
1.55e-98FFCP PHASE1:Hg19::chr11:2436040..2436051,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr11:2436040..2436051, -
1.55e-98FFCP PHASE2:Hg19::chr8:121066549..121066554,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr8:121066549..121066554, -
1.55e-98FFCP PHASE2:Hg19::chr3:4810204..4810210,+#_57c29b5b2555c5f03a8b47a182e1721fp34@ITPR1
1.55e-98FFCP PHASE2:Hg19::chr5:40984132..40984133,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr5:40984132..40984133, +
1.55e-98FFCP PHASE2:Hg19::chr20:43726566..43726571,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr20:43726566..43726571, +
1.55e-98FFCP PHASE1:Hg19::chr2:9059377..9059382,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr2:9059377..9059382, -
1.55e-98FFCP PHASE1:Hg19::chr8:41485005..41485017,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr8:41485005..41485017, -
1.55e-98FFCP PHASE1:Hg19::chr17:32314322..32314327,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr17:32314322..32314327, -
1.55e-98FFCP PHASE1:Hg19::chr12:131117116..131117123,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr12:131117116..131117123, -
1.55e-98FFCP PHASE2:Hg19::chr12:14849414..14849417,-#_57c29b5b2555c5f03a8b47a182e1721fp8@GUCY2C
1.55e-98FFCP PHASE1:Hg19::chr5:170105957..170105992,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr5:170105957..170105992, -
1.55e-98FFCP PHASE2:Hg19::chr22:44377129..44377137,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr22:44377129..44377137, +
1.55e-98FFCP PHASE2:Hg19::chr2:9059355..9059366,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr2:9059355..9059366, -
1.55e-98FFCP PHASE1:Hg19::chr7:127258190..127258201,-#_57c29b5b2555c5f03a8b47a182e1721fp2@PAX4
1.55e-98FFCP PHASE2:Hg19::chr6:49467646..49467657,+#_57c29b5b2555c5f03a8b47a182e1721fp1@GLYATL3
1.55e-98FFCP PHASE2:Hg19::chr17:26911586..26911592,-#_57c29b5b2555c5f03a8b47a182e1721fp9@SPAG5
1.55e-98FFCP PHASE1:Hg19::chr2:182546258..182546267,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr2:182546258..182546267, +
1.55e-98FFCP PHASE2:Hg19::chr8:41485201..41485208,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr8:41485201..41485208, -
1.55e-98FFCP PHASE2:Hg19::chr1:70826186..70826193,-#_57c29b5b2555c5f03a8b47a182e1721fp4@ENST00000413943
1.55e-98FFCP PHASE1:Hg19::chr21:47588743..47588750,-#_57c29b5b2555c5f03a8b47a182e1721fp9@C21orf56
1.55e-98FFCP PHASE1:Hg19::chr1:207193762..207193766,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr1:207193762..207193766, +
1.55e-98FFCP PHASE2:Hg19::chr20:43727212..43727217,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr20:43727212..43727217, -
1.55e-98FFCP PHASE1:Hg19::chr6:49467718..49467724,+#_57c29b5b2555c5f03a8b47a182e1721fp4@GLYATL3
1.55e-98FFCP PHASE1:Hg19::chr19:7184762..7184771,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr19:7184762..7184771, -
1.55e-98FFCP PHASE1:Hg19::chr8:41486855..41486866,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr8:41486855..41486866, -
1.55e-98FFCP PHASE1:Hg19::chr11:2428348..2428358,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr11:2428348..2428358, -
1.55e-98FFCP PHASE2:Hg19::chr8:121056349..121056360,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr8:121056349..121056360, -
1.55e-98FFCP PHASE1:Hg19::chr20:21918470..21918480,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr20:21918470..21918480, +
1.55e-98FFCP PHASE1:Hg19::chr17:27892945..27892952,+#_57c29b5b2555c5f03a8b47a182e1721fp@chr17:27892945..27892952, +
1.55e-98FFCP PHASE2:Hg19::chr2:182548440..182548448,-#_57c29b5b2555c5f03a8b47a182e1721fp@chr2:182548440..182548448, -

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