CL:1000280: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=smooth muscle cell of colon | |name=smooth muscle cell of colon | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001155 | |part_of=UBERON:0001155 | ||
Latest revision as of 16:46, 12 September 2014
| Name: | smooth muscle cell of colon | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A smooth muscle cell that is part of the colon." [GOC:tfm] | ||
| Xrefs: |
| ||
| Synonyms: | "non-striated muscle fiber of colon" EXACT [FMA:15663] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:1000279(smooth muscle cell of large intestine) |
|---|---|
| part_of: | UBERON:0001155(colon) |
Children
| derives from: | FF:0000181 (human smooth muscle of colon sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11320-117D6 (Smooth Muscle Cells - Colonic, donor2)
- 11396-118D1 (Smooth Muscle Cells - Colonic, donor3)
Mouse (Mus musculus)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11320-117D6 (Smooth Muscle Cells - Colonic, donor2)
- 11396-118D1 (Smooth Muscle Cells - Colonic, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000280 (smooth muscle cell of colon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.98e-131 | FFCP PHASE2:Hg19::chr12:52473515..52473526,+#_2ad417faac8e48c510ddd5173778c2e5 | p3@ENST00000546390, p3@uc009zme.1 |
| 8.98e-131 | FFCP PHASE1:Hg19::chr12:52473515..52473526,+#_2ad417faac8e48c510ddd5173778c2e5 | p3@ENST00000546390, p3@uc009zme.1 |
| 1.11e-98 | FFCP PHASE1:Hg19::chr20:49269691..49269695,+#_b17cab7ac0137e6f39fadef260a56d81 | p1@ENST00000435177 |
| 1.11e-98 | FFCP PHASE2:Hg19::chr20:49269691..49269695,+#_b17cab7ac0137e6f39fadef260a56d81 | p1@ENST00000435177 |
| 4.71e-66 | FFCP PHASE2:Hg19::chr12:52473502..52473510,+#_bb8298808b46dd5c4b63a2f0974e050a | p2@ENST00000546390, p2@uc009zme.1 |
| 4.71e-66 | FFCP PHASE1:Hg19::chr12:52473502..52473510,+#_bb8298808b46dd5c4b63a2f0974e050a | p2@ENST00000546390, p2@uc009zme.1 |
| 7.24e-50 | FFCP PHASE1:Hg19::chr3:177652390..177652395,+#_9c82a7ff3660dce9afec0da83fbb5675 | p1@ENST00000450500 |
| 7.24e-50 | FFCP PHASE2:Hg19::chr3:177652390..177652395,+#_9c82a7ff3660dce9afec0da83fbb5675 | p1@ENST00000450500 |
| 6.47e-47 | FFCP PHASE2:Hg19::chr13:94958134..94958164,+#_d3398a3f28365609bbf41746fe258c4c | p@chr13:94958134..94958164, + |
| 6.47e-47 | FFCP PHASE1:Hg19::chr13:94958134..94958164,+#_d3398a3f28365609bbf41746fe258c4c | p@chr13:94958134..94958164, + |
| 8.55e-40 | FFCP PHASE2:Hg19::chr2:114300263..114300269,-#_1da6c7ea075b368865caddbcfc1899b2 | p1@ENST00000416758 |
| 8.55e-40 | FFCP PHASE1:Hg19::chr2:114300263..114300269,-#_1da6c7ea075b368865caddbcfc1899b2 | p1@ENST00000416758 |
| 9.77e-40 | FFCP PHASE1:Hg19::chr16:86229885..86229905,+#_c921f9ef81a666c8d3384f3e9d74ea37 | p@chr16:86229885..86229905, + |
| 9.77e-40 | FFCP PHASE2:Hg19::chr16:86229885..86229905,+#_c921f9ef81a666c8d3384f3e9d74ea37 | p@chr16:86229885..86229905, + |
| 2.95e-37 | FFCP PHASE1:Hg19::chr16:86229916..86229943,+#_20a65d2d464f336e6b692165151b2551 | p@chr16:86229916..86229943, + |
| 2.95e-37 | FFCP PHASE2:Hg19::chr16:86229916..86229943,+#_20a65d2d464f336e6b692165151b2551 | p@chr16:86229916..86229943, + |
| 9.1e-34 | FFCP PHASE1:Hg19::chr6:31304866..31304870,-#_3a77194d9e3920b96c4ed9d3fa4cc31a | p@chr6:31304866..31304870, - |
| 9.1e-34 | FFCP PHASE2:Hg19::chr6:31304866..31304870,-#_3a77194d9e3920b96c4ed9d3fa4cc31a | p@chr6:31304866..31304870, - |
| 4.53e-30 | FFCP PHASE1:Hg19::chr8:120079398..120079416,+#_e50b2666ed7fca121133d9ad71dcc5f8 | p3@COLEC10 |
| 4.53e-30 | FFCP PHASE2:Hg19::chr8:120079398..120079416,+#_e50b2666ed7fca121133d9ad71dcc5f8 | p3@COLEC10 |
| 4.07e-27 | FFCP PHASE1:Hg19::chr6:134210625..134210636,+#_c48893b0c614676a7f13772c54767ee7 | p6@TCF21 |
| 4.07e-27 | FFCP PHASE2:Hg19::chr6:134210625..134210636,+#_c48893b0c614676a7f13772c54767ee7 | p6@TCF21 |
| 7.88e-27 | FFCP PHASE1:Hg19::chr18:77557973..77557984,+#_e77c07e4036bf34bfe3846299b4968e2 | p@chr18:77557973..77557984, + |
| 7.88e-27 | FFCP PHASE2:Hg19::chr18:77557973..77557984,+#_e77c07e4036bf34bfe3846299b4968e2 | p@chr18:77557973..77557984, + |
| 5.75e-26 | FFCP PHASE1:Hg19::chr1:78401534..78401545,+#_193a33ca706a42eb8a3f42107cc2c7c7 | p@chr1:78401534..78401545, + |
| 5.75e-26 | FFCP PHASE2:Hg19::chr1:78401534..78401545,+#_193a33ca706a42eb8a3f42107cc2c7c7 | p@chr1:78401534..78401545, + |
| 2.34e-25 | FFCP PHASE1:Hg19::chr15:50149374..50149385,+#_54ab4938ace0964a41303b033a4e0e65 | p@chr15:50149374..50149385, + |
| 2.34e-25 | FFCP PHASE2:Hg19::chr15:50149374..50149385,+#_54ab4938ace0964a41303b033a4e0e65 | p@chr15:50149374..50149385, + |
| 2.64e-25 | FFCP PHASE2:Hg19::chr3:150966773..150966784,-#_d8d7d42d6c5e44c7d6ccacc9a7bd3933 | p7@P2RY14 |
| 2.64e-25 | FFCP PHASE1:Hg19::chr7:136759435..136759447,+#_d8d7d42d6c5e44c7d6ccacc9a7bd3933 | p@chr7:136759435..136759447, + |
| 2.64e-25 | FFCP PHASE1:Hg19::chr3:150966773..150966784,-#_d8d7d42d6c5e44c7d6ccacc9a7bd3933 | p7@P2RY14 |
| 2.64e-25 | FFCP PHASE2:Hg19::chr7:136759435..136759447,+#_d8d7d42d6c5e44c7d6ccacc9a7bd3933 | p@chr7:136759435..136759447, + |
| 6.22e-25 | FFCP PHASE1:Hg19::chr5:10237680..10237685,+#_2d3439050f2ecd5dff8b8eae839ba560 | p@chr5:10237680..10237685, + |
| 6.22e-25 | FFCP PHASE2:Hg19::chr5:10237680..10237685,+#_2d3439050f2ecd5dff8b8eae839ba560 | p@chr5:10237680..10237685, + |
| 3.62e-24 | FFCP PHASE1:Hg19::chr4:1167293..1167308,-#_01ca8bbf6e9713d702ee88e873c2e25e | p18@SPON2 |
| 3.62e-24 | FFCP PHASE2:Hg19::chr4:1167293..1167308,-#_01ca8bbf6e9713d702ee88e873c2e25e | p18@SPON2 |
| 5.35e-24 | FFCP PHASE1:Hg19::chr16:86229728..86229756,+#_3ad79b83e9621be4b73874dd882e7e4b | p@chr16:86229728..86229756, + |
| 5.35e-24 | FFCP PHASE2:Hg19::chr16:86229728..86229756,+#_3ad79b83e9621be4b73874dd882e7e4b | p@chr16:86229728..86229756, + |
| 1.88e-23 | FFCP PHASE1:Hg19::chr3:150966718..150966738,-#_066140910d597e07ce356f133ca17700 | p9@P2RY14 |
| 1.88e-23 | FFCP PHASE2:Hg19::chr3:150966718..150966738,-#_066140910d597e07ce356f133ca17700 | p9@P2RY14 |
| 2.62e-23 | FFCP PHASE1:Hg19::chr8:109482025..109482032,+#_badcb449b5cf457fc52a99d135b56c0f | p@chr8:109482025..109482032, + |
| 2.62e-23 | FFCP PHASE2:Hg19::chr8:109482025..109482032,+#_badcb449b5cf457fc52a99d135b56c0f | p@chr8:109482025..109482032, + |
| 3.09e-23 | FFCP PHASE1:Hg19::chr4:120549834..120549846,-#_eb23ba9035383407e0726a4b1b21ec73 | p15@PDE5A |
| 3.09e-23 | FFCP PHASE2:Hg19::chr4:120549834..120549846,-#_eb23ba9035383407e0726a4b1b21ec73 | p15@PDE5A |
| 4.66e-22 | FFCP PHASE1:Hg19::chr9:113137742..113137746,-#_6ca5da21852c720fb9cfde7cc7cda8eb | p@chr9:113137742..113137746, - |
| 4.66e-22 | FFCP PHASE2:Hg19::chr9:113137742..113137746,-#_6ca5da21852c720fb9cfde7cc7cda8eb | p@chr9:113137742..113137746, - |
| 1.59e-21 | FFCP PHASE1:Hg19::chr3:150966697..150966714,-#_2bca9f60b7632c005185b2ee9286612b | p8@P2RY14 |
| 1.59e-21 | FFCP PHASE2:Hg19::chr3:150966697..150966714,-#_2bca9f60b7632c005185b2ee9286612b | p8@P2RY14 |
| 1.76e-21 | FFCP PHASE2:Hg19::chr3:150966861..150966873,-#_097870e4b71a3649c5d676c9bde4d0d4 | p6@P2RY14 |
| 1.76e-21 | FFCP PHASE1:Hg19::chr3:150966861..150966873,-#_097870e4b71a3649c5d676c9bde4d0d4 | p6@P2RY14 |
| 2.67e-21 | FFCP PHASE2:Hg19::chr18:77557932..77557943,+#_47851cb201f5179223165979d1456a2c | p@chr18:77557932..77557943, + |
| 2.67e-21 | FFCP PHASE1:Hg19::chr18:77557932..77557943,+#_47851cb201f5179223165979d1456a2c | p@chr18:77557932..77557943, + |
| 5.41e-21 | FFCP PHASE2:Hg19::chr1:246151834..246151867,-#_3933fb540058c2d3f58ff11b2c21edd8 | p4@SMYD3 |
| 5.41e-21 | FFCP PHASE1:Hg19::chr1:246151834..246151867,-#_3933fb540058c2d3f58ff11b2c21edd8 | p4@SMYD3 |
| 7.12e-21 | FFCP PHASE2:Hg19::chr5:52096217..52096226,+#_5331f587918e051f681ee1c4cee16f35 | p11@PELO |
| 7.12e-21 | FFCP PHASE1:Hg19::chr5:52096217..52096226,+#_5331f587918e051f681ee1c4cee16f35 | p11@PELO |
| 7.42e-21 | FFCP PHASE1:Hg19::chr5:34915414..34915420,+#_d324b08294d56c3a5ce196c45cc31665 | p4@BRIX1 |
| 7.42e-21 | FFCP PHASE2:Hg19::chr5:34915414..34915420,+#_d324b08294d56c3a5ce196c45cc31665 | p4@BRIX1 |
| 1.07e-20 | FFCP PHASE1:Hg19::chr8:120079417..120079436,+#_cf9e0674e4b66f47af9abeef5ef95674 | p2@COLEC10 |
| 1.07e-20 | FFCP PHASE2:Hg19::chr8:120079417..120079436,+#_cf9e0674e4b66f47af9abeef5ef95674 | p2@COLEC10 |
| 5.27e-20 | FFCP PHASE1:Hg19::chr6:134210095..134210147,-#_52f99020e9c1a2f2876947c1af70f15b | p1@uc003qeg.1 |
| 5.27e-20 | FFCP PHASE2:Hg19::chr6:134210095..134210147,-#_52f99020e9c1a2f2876947c1af70f15b | p1@uc003qeg.1 |
| 6.54e-20 | FFCP PHASE1:Hg19::chr9:118701892..118701903,+#_66092f0b55ff5a8e96913d379640d5f1 | p@chr9:118701892..118701903, + |
| 6.54e-20 | FFCP PHASE2:Hg19::chr9:118701892..118701903,+#_66092f0b55ff5a8e96913d379640d5f1 | p@chr9:118701892..118701903, + |
| 8.67e-20 | FFCP PHASE2:Hg19::chr15:50193489..50193500,-#_2f76cbf149e01bcbfea63dd019de5e0f | p@chr15:50193489..50193500, - |
| 8.67e-20 | FFCP PHASE1:Hg19::chr15:50193489..50193500,-#_2f76cbf149e01bcbfea63dd019de5e0f | p@chr15:50193489..50193500, - |
| 6.34e-19 | FFCP PHASE2:Hg19::chr9:118701819..118701835,+#_6618a44a13e4485c037c9b9623858dfa | p@chr9:118701819..118701835, + |
| 6.34e-19 | FFCP PHASE1:Hg19::chr9:118701819..118701835,+#_6618a44a13e4485c037c9b9623858dfa | p@chr9:118701819..118701835, + |
| 2.53e-18 | FFCP PHASE1:Hg19::chr7:150574212..150574225,-#_b5fb68c6947c8034c298a7515c13fa33 | p@chr7:150574212..150574225, - |
| 2.53e-18 | FFCP PHASE2:Hg19::chr7:150574212..150574225,-#_b5fb68c6947c8034c298a7515c13fa33 | p@chr7:150574212..150574225, - |
| 2.81e-18 | FFCP PHASE1:Hg19::chr1:246023808..246023820,-#_bdb21505e3a0800cba2087314c253df9 | p@chr1:246023808..246023820, - |
| 2.81e-18 | FFCP PHASE2:Hg19::chr1:246023808..246023820,-#_bdb21505e3a0800cba2087314c253df9 | p@chr1:246023808..246023820, - |
| 9.46e-18 | FFCP PHASE1:Hg19::chr10:62677334..62677342,-#_a78f404c01d70a5879e3df5f1e43e162 | p@chr10:62677334..62677342, - |
| 9.46e-18 | FFCP PHASE2:Hg19::chr4:120546882..120546885,-#_a78f404c01d70a5879e3df5f1e43e162 | p@chr4:120546882..120546885, - |
| 9.46e-18 | FFCP PHASE1:Hg19::chr4:120546882..120546885,-#_a78f404c01d70a5879e3df5f1e43e162 | p@chr4:120546882..120546885, - |
| 9.46e-18 | FFCP PHASE2:Hg19::chr10:62677334..62677342,-#_a78f404c01d70a5879e3df5f1e43e162 | p@chr10:62677334..62677342, - |
| 1.21e-17 | FFCP PHASE2:Hg19::chr11:19441234..19441247,+#_60472a9ce153d60a1c90ee69a7c1229c | p@chr11:19441234..19441247, + |
| 1.21e-17 | FFCP PHASE1:Hg19::chr11:19441234..19441247,+#_60472a9ce153d60a1c90ee69a7c1229c | p@chr11:19441234..19441247, + |
| 1.51e-17 | FFCP PHASE2:Hg19::chr15:80800274..80800278,-#_515cdb06b8b168ed3bd6cce82001809f | p@chr15:80800274..80800278, - |
| 1.51e-17 | FFCP PHASE1:Hg19::chr15:80800274..80800278,-#_515cdb06b8b168ed3bd6cce82001809f | p@chr15:80800274..80800278, - |
| 2.0e-17 | FFCP PHASE1:Hg19::chr1:31842256..31842273,+#_2df567872c27f103b5ac795612db543c | p@chr1:31842256..31842273, + |
| 2.0e-17 | FFCP PHASE2:Hg19::chr1:31842256..31842273,+#_2df567872c27f103b5ac795612db543c | p@chr1:31842256..31842273, + |
| 2.07e-17 | FFCP PHASE2:Hg19::chr18:77557948..77557968,+#_d1012a7a2f5aa5f8efb6547992ddaa69 | p@chr18:77557948..77557968, + |
| 2.07e-17 | FFCP PHASE1:Hg19::chr18:77557948..77557968,+#_d1012a7a2f5aa5f8efb6547992ddaa69 | p@chr18:77557948..77557968, + |
| 3.48e-17 | FFCP PHASE2:Hg19::chr4:1165106..1165131,-#_31ab81fcbd9f81802c8c8fc04cf35167 | p15@SPON2 |
| 3.48e-17 | FFCP PHASE1:Hg19::chr4:1165106..1165131,-#_31ab81fcbd9f81802c8c8fc04cf35167 | p15@SPON2 |
| 4.46e-17 | FFCP PHASE2:Hg19::chr10:101292731..101292741,+#_c62e13d3ce8f527559dbfc56e68fbea4 | p2@NKX2-3 |
| 4.46e-17 | FFCP PHASE1:Hg19::chr10:101292731..101292741,+#_c62e13d3ce8f527559dbfc56e68fbea4 | p2@NKX2-3 |
| 5.3e-17 | FFCP PHASE2:Hg19::chr7:136759451..136759469,+#_bbb34935fa30a24d1ff8914042da0dd1 | p@chr7:136759451..136759469, + |
| 5.3e-17 | FFCP PHASE1:Hg19::chr7:136759451..136759469,+#_bbb34935fa30a24d1ff8914042da0dd1 | p@chr7:136759451..136759469, + |
| 8.36e-17 | FFCP PHASE1:Hg19::chr1:155225028..155225037,-#_d0b6fd9030d9e66a30d13bee37c8c182 | p7@FAM189B |
| 8.36e-17 | FFCP PHASE2:Hg19::chr1:155225028..155225037,-#_d0b6fd9030d9e66a30d13bee37c8c182 | p7@FAM189B |
| 1.05e-16 | FFCP PHASE2:Hg19::chr8:120079478..120079499,+#_29cdc37bdd8af329c190aa5698c747b3 | p1@COLEC10 |
| 1.05e-16 | FFCP PHASE1:Hg19::chr8:120079478..120079499,+#_29cdc37bdd8af329c190aa5698c747b3 | p1@COLEC10 |
| 1.88e-16 | FFCP PHASE1:Hg19::chr4:151503507..151503518,+#_f99c09fbf80ec03225689c89dceec170 | p6@MAB21L2 |
| 1.88e-16 | FFCP PHASE2:Hg19::chr4:151503507..151503518,+#_f99c09fbf80ec03225689c89dceec170 | p6@MAB21L2 |
| 2.92e-16 | FFCP PHASE2:Hg19::chr10:101292684..101292706,+#_1638a15a399972d92db91334f61acd49 | p1@NKX2-3 |
| 2.92e-16 | FFCP PHASE1:Hg19::chr10:101292684..101292706,+#_1638a15a399972d92db91334f61acd49 | p1@NKX2-3 |
| 4.41e-16 | FFCP PHASE1:Hg19::chr1:21766691..21766715,+#_9a0aef093e1f305ffd8e845e518421a4 | p3@NBPF3 |
| 4.41e-16 | FFCP PHASE2:Hg19::chr1:21766691..21766715,+#_9a0aef093e1f305ffd8e845e518421a4 | p3@NBPF3 |
