UBERON:0001155: Difference between revisions
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|located_in= | |located_in= | ||
|name=colon | |name=colon | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000059 | |part_of=UBERON:0000059 | ||
Latest revision as of 17:16, 12 September 2014
| Name: | colon | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. <a href | ||
| Xrefs: |
| ||
| Synonyms: |
"hindgut" RELATED [] "large bowel" EXACT [] "posterior intestine" NARROW [] "posterior intestine - zebrafish" BROAD [] | ||
| Comments: | TODO: abstract this such that it legitimately covers all vertebrates | ||
| Alt_id: | UBERON:FMA_14543-FMA_7201-MA_0000333-MA_0000335-MAP_0000001-MIAA_0000046-XAO_0000131-XAO_0000243-ZFA_0000706 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004921(subdivision of digestive tract) |
|---|---|
| part_of: | UBERON:0000059(large intestine) |
Children
| is a: | FF:0100797 (colonic cancer cell line) |
|---|---|
| derives from: | FF:0010014 (human colon - adult sample),FF:0010070 (human colon - fetal sample),FF:0011323 (mouse colon- adult sample) |
| part of: | FF:0000181 (human smooth muscle of colon sample),UBERON:0001153 (caecum),FF:0010070 (human colon - fetal sample),CL:1000280 (smooth muscle cell of colon) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10014-101C5 (colon, adult, pool1)
- 10070-101I7 (colon, fetal, donor1)
- 10082-102B1 (colon, adult, donor1)
- 10189-103D9 (appendix, adult)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10523-107F1
- 10557-107I8
- 10635-108I5
... further results Mouse (Mus musculus)
- 10014-101C5 (colon, adult, pool1)
- 10070-101I7 (colon, fetal, donor1)
- 10082-102B1 (colon, adult, donor1)
- 10189-103D9 (appendix, adult)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10523-107F1
- 10557-107I8
- 10635-108I5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001155 (colon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.37e-87 | FFCP PHASE1:Hg19::chr13:28541477..28541493,-#_3c506760b257ba2ace0b7df0839e557c | p6@CDX2 |
| 1.37e-87 | FFCP PHASE1:Hg19::chr11:60260248..60260251,+#_3c506760b257ba2ace0b7df0839e557c | p1@MS4A12 |
| 1.37e-87 | FFCP PHASE2:Hg19::chr13:28541477..28541493,-#_3c506760b257ba2ace0b7df0839e557c | p6@CDX2 |
| 1.37e-87 | FFCP PHASE2:Hg19::chr11:60260248..60260251,+#_3c506760b257ba2ace0b7df0839e557c | p1@MS4A12 |
| 1.37e-87 | FFCP PHASE1:Hg19::chr4:150822397..150822409,-#_3c506760b257ba2ace0b7df0839e557c | p@chr4:150822397..150822409, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr4:150822397..150822409,-#_3c506760b257ba2ace0b7df0839e557c | p@chr4:150822397..150822409, - |
| 2.16e-70 | FFCP PHASE1:Hg19::chr2:200333534..200333558,+#_c6ef2a5e2509fcd81afe4620b23d9819 | p1@ENST00000446911 |
| 2.16e-70 | FFCP PHASE2:Hg19::chr16:67463701..67463709,+#_c6ef2a5e2509fcd81afe4620b23d9819 | p@chr16:67463701..67463709, + |
| 2.16e-70 | FFCP PHASE1:Hg19::chr16:67463701..67463709,+#_c6ef2a5e2509fcd81afe4620b23d9819 | p@chr16:67463701..67463709, + |
| 2.16e-70 | FFCP PHASE2:Hg19::chr2:200333534..200333558,+#_c6ef2a5e2509fcd81afe4620b23d9819 | p1@ENST00000446911 |
| 2.58e-70 | FFCP PHASE1:Hg19::chr11:114430570..114430581,-#_88806d0d2a73fa87de2929c70e9430ad | p2@FAM55A |
| 2.58e-70 | FFCP PHASE2:Hg19::chr11:114430570..114430581,-#_88806d0d2a73fa87de2929c70e9430ad | p2@FAM55A |
| 3.09e-70 | FFCP PHASE2:Hg19::chr16:25228264..25228273,+#_7a315cbdae1ccf6cb8517b8aa89f7c95 | p1@AQP8 |
| 3.09e-70 | FFCP PHASE1:Hg19::chr7:100612647..100612650,+#_7a315cbdae1ccf6cb8517b8aa89f7c95 | p8@MUC12 |
| 3.09e-70 | FFCP PHASE2:Hg19::chr6:168479679..168479688,-#_7a315cbdae1ccf6cb8517b8aa89f7c95 | p6@FRMD1 |
| 3.09e-70 | FFCP PHASE2:Hg19::chr7:100612647..100612650,+#_7a315cbdae1ccf6cb8517b8aa89f7c95 | p8@MUC12 |
| 3.09e-70 | FFCP PHASE1:Hg19::chr16:25228264..25228273,+#_7a315cbdae1ccf6cb8517b8aa89f7c95 | p1@AQP8 |
| 3.09e-70 | FFCP PHASE1:Hg19::chr6:168479679..168479688,-#_7a315cbdae1ccf6cb8517b8aa89f7c95 | p6@FRMD1 |
| 3.75e-66 | FFCP PHASE1:Hg19::chr15:45950466..45950474,+#_66f5eafdf9b0c4b6b6f4b56d1eb8b2e0 | p@chr15:45950466..45950474, + |
| 3.75e-66 | FFCP PHASE1:Hg19::chr1:38201159..38201166,-#_66f5eafdf9b0c4b6b6f4b56d1eb8b2e0 | p@chr1:38201159..38201166, - |
| 3.75e-66 | FFCP PHASE2:Hg19::chr1:38201159..38201166,-#_66f5eafdf9b0c4b6b6f4b56d1eb8b2e0 | p@chr1:38201159..38201166, - |
| 3.75e-66 | FFCP PHASE2:Hg19::chr15:45950466..45950474,+#_66f5eafdf9b0c4b6b6f4b56d1eb8b2e0 | p@chr15:45950466..45950474, + |
| 6.42e-59 | FFCP PHASE2:Hg19::chr11:114522262..114522267,-#_a5c3d88bb81406389ba8a40f79dafcd0 | p@chr11:114522262..114522267, - |
| 6.42e-59 | FFCP PHASE1:Hg19::chr11:114522262..114522267,-#_a5c3d88bb81406389ba8a40f79dafcd0 | p@chr11:114522262..114522267, - |
| 8.65e-59 | FFCP PHASE1:Hg19::chr16:29748234..29748245,-#_82a76f8fa68240c5db3bbd8d6c4895ab | p@chr16:29748234..29748245, - |
| 8.65e-59 | FFCP PHASE2:Hg19::chr16:29748234..29748245,-#_82a76f8fa68240c5db3bbd8d6c4895ab | p@chr16:29748234..29748245, - |
| 1.0e-58 | FFCP PHASE2:Hg19::chr1:155912696..155912738,-#_5eadc0f6e277b37f6ee1b61b3bb71a7a | p@chr1:155912696..155912738, - |
| 1.0e-58 | FFCP PHASE1:Hg19::chr1:155912696..155912738,-#_5eadc0f6e277b37f6ee1b61b3bb71a7a | p@chr1:155912696..155912738, - |
| 1.35e-58 | FFCP PHASE1:Hg19::chr21:44151895..44151908,+#_73b3a03c1e8f48fabf6fab6fa61fdc99 | p6@PDE9A |
| 1.35e-58 | FFCP PHASE2:Hg19::chr21:44151895..44151908,+#_73b3a03c1e8f48fabf6fab6fa61fdc99 | p6@PDE9A |
| 1.6e-52 | FFCP PHASE1:Hg19::chr13:28543409..28543420,-#_14accade468969b63d2739a57237cdbb | p8@CDX2 |
| 1.6e-52 | FFCP PHASE2:Hg19::chr13:28543409..28543420,-#_14accade468969b63d2739a57237cdbb | p8@CDX2 |
| 1.32e-50 | FFCP PHASE2:Hg19::chr8:86253920..86253944,-#_55f4cbc718fdad2c383d5cf117d2403d | p2@CA1 |
| 1.32e-50 | FFCP PHASE1:Hg19::chr7:100612686..100612700,+#_55f4cbc718fdad2c383d5cf117d2403d | p3@MUC12 |
| 1.32e-50 | FFCP PHASE2:Hg19::chr7:100612686..100612700,+#_55f4cbc718fdad2c383d5cf117d2403d | p3@MUC12 |
| 1.32e-50 | FFCP PHASE1:Hg19::chr8:86253920..86253944,-#_55f4cbc718fdad2c383d5cf117d2403d | p2@CA1 |
| 1.49e-50 | FFCP PHASE1:Hg19::chr3:108476254..108476257,-#_dda707e8247cb3604bcb7178a1e52457 | p1@RETNLB |
| 1.49e-50 | FFCP PHASE2:Hg19::chr3:108476254..108476257,-#_dda707e8247cb3604bcb7178a1e52457 | p1@RETNLB |
| 1.49e-50 | FFCP PHASE2:Hg19::chr7:100612141..100612155,-#_dda707e8247cb3604bcb7178a1e52457 | p@chr7:100612141..100612155, - |
| 1.49e-50 | FFCP PHASE1:Hg19::chr7:100612141..100612155,-#_dda707e8247cb3604bcb7178a1e52457 | p@chr7:100612141..100612155, - |
| 1.7e-50 | FFCP PHASE1:Hg19::chr12:12223888..12223897,+#_5133412603218b65adad777d7d0be92b | p6@BCL2L14 |
| 1.7e-50 | FFCP PHASE2:Hg19::chr12:12223888..12223897,+#_5133412603218b65adad777d7d0be92b | p6@BCL2L14 |
| 2.19e-50 | FFCP PHASE1:Hg19::chr6:168479694..168479708,-#_028a95b9a1e3120fcccce9a7c2a2e73f | p3@FRMD1 |
| 2.19e-50 | FFCP PHASE2:Hg19::chr6:168479694..168479708,-#_028a95b9a1e3120fcccce9a7c2a2e73f | p3@FRMD1 |
| 2.49e-50 | FFCP PHASE2:Hg19::chr11:114466471..114466474,-#_2f72cde143db95b84fb1bbcea7673c02 | p4@FAM55D |
| 2.49e-50 | FFCP PHASE1:Hg19::chr11:114466471..114466474,-#_2f72cde143db95b84fb1bbcea7673c02 | p4@FAM55D |
| 2.83e-50 | FFCP PHASE2:Hg19::chr17:1013514..1013520,-#_d61164d839dc7fcaf7d336fdb66efeee | p@chr17:1013514..1013520, - |
| 2.83e-50 | FFCP PHASE1:Hg19::chr17:1013514..1013520,-#_d61164d839dc7fcaf7d336fdb66efeee | p@chr17:1013514..1013520, - |
| 4.7e-50 | FFCP PHASE2:Hg19::chr11:114466498..114466513,-#_55c68f05cb65e83da7c4cc2a8875063b | p3@FAM55D |
| 4.7e-50 | FFCP PHASE1:Hg19::chr11:114466498..114466513,-#_55c68f05cb65e83da7c4cc2a8875063b | p3@FAM55D |
| 4.7e-50 | FFCP PHASE2:Hg19::chr11:114466477..114466489,-#_55c68f05cb65e83da7c4cc2a8875063b | p1@FAM55D |
| 4.7e-50 | FFCP PHASE1:Hg19::chr11:114466477..114466489,-#_55c68f05cb65e83da7c4cc2a8875063b | p1@FAM55D |
| 6.62e-50 | FFCP PHASE1:Hg19::chr2:200329672..200329678,-#_490e7f423ab566e6f25523dd5fb6639e | p50@SATB2 |
| 6.62e-50 | FFCP PHASE2:Hg19::chr2:200329672..200329678,-#_490e7f423ab566e6f25523dd5fb6639e | p50@SATB2 |
| 7.64e-50 | FFCP PHASE1:Hg19::chr4:120243266..120243277,-#_b60046092abc4d6659c321a5307eb449 | p2@FABP2 |
| 7.64e-50 | FFCP PHASE2:Hg19::chr4:120243266..120243277,-#_b60046092abc4d6659c321a5307eb449 | p2@FABP2 |
| 9.25e-50 | FFCP PHASE1:Hg19::chr5:78505723..78505730,+#_1806b45ab2b96396072e3f38eed11820 | p@chr5:78505723..78505730, + |
| 9.25e-50 | FFCP PHASE2:Hg19::chr5:78505723..78505730,+#_1806b45ab2b96396072e3f38eed11820 | p@chr5:78505723..78505730, + |
| 9.25e-50 | FFCP PHASE1:Hg19::chr20:9313938..9313946,+#_1806b45ab2b96396072e3f38eed11820 | p@chr20:9313938..9313946, + |
| 9.25e-50 | FFCP PHASE2:Hg19::chr20:9313938..9313946,+#_1806b45ab2b96396072e3f38eed11820 | p@chr20:9313938..9313946, + |
| 1.84e-48 | FFCP PHASE2:Hg19::chr10:101292731..101292741,+#_9e54099e498f5e5625483c58ffaf66ed | p2@NKX2-3 |
| 1.84e-48 | FFCP PHASE1:Hg19::chr10:101292731..101292741,+#_9e54099e498f5e5625483c58ffaf66ed | p2@NKX2-3 |
| 4.09e-46 | FFCP PHASE1:Hg19::chr3:150966718..150966738,-#_f311c45389df36d93aa952676f52605b | p9@P2RY14 |
| 4.09e-46 | FFCP PHASE2:Hg19::chr3:150966718..150966738,-#_f311c45389df36d93aa952676f52605b | p9@P2RY14 |
| 9.46e-46 | FFCP PHASE2:Hg19::chr18:29769995..29770009,+#_d83e1b3d3b5b106562e016b4ac5de47a | p1@MEP1B |
| 9.46e-46 | FFCP PHASE1:Hg19::chr18:29769995..29770009,+#_d83e1b3d3b5b106562e016b4ac5de47a | p1@MEP1B |
| 9.75e-45 | FFCP PHASE1:Hg19::chr18:8974610..8974620,+#_5730b40bfa6ba31c21bc0950758d0347 | p@chr18:8974610..8974620, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr12:52473515..52473526,+#_5730b40bfa6ba31c21bc0950758d0347 | p3@ENST00000546390, p3@uc009zme.1 |
| 9.75e-45 | FFCP PHASE1:Hg19::chr19:42190911..42190925,-#_5730b40bfa6ba31c21bc0950758d0347 | p@chr19:42190911..42190925, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr19:42190911..42190925,-#_5730b40bfa6ba31c21bc0950758d0347 | p@chr19:42190911..42190925, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr3:164875937..164875960,-#_5730b40bfa6ba31c21bc0950758d0347 | p1@ENST00000472120 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr18:8974567..8974578,+#_5730b40bfa6ba31c21bc0950758d0347 | p@chr18:8974567..8974578, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr3:164875937..164875960,-#_5730b40bfa6ba31c21bc0950758d0347 | p1@ENST00000472120 |
| 9.75e-45 | FFCP PHASE1:Hg19::chr15:45950495..45950505,+#_5730b40bfa6ba31c21bc0950758d0347 | p@chr15:45950495..45950505, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr18:8974610..8974620,+#_5730b40bfa6ba31c21bc0950758d0347 | p@chr18:8974610..8974620, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr18:8974567..8974578,+#_5730b40bfa6ba31c21bc0950758d0347 | p@chr18:8974567..8974578, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr12:52473515..52473526,+#_5730b40bfa6ba31c21bc0950758d0347 | p3@ENST00000546390, p3@uc009zme.1 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr15:45950495..45950505,+#_5730b40bfa6ba31c21bc0950758d0347 | p@chr15:45950495..45950505, + |
| 1.45e-44 | FFCP PHASE2:Hg19::chr11:114430588..114430608,-#_28c77c0c7c597f10872f3bfe04b3e0ae | p1@FAM55A |
| 1.45e-44 | FFCP PHASE1:Hg19::chr11:114430588..114430608,-#_28c77c0c7c597f10872f3bfe04b3e0ae | p1@FAM55A |
| 1.63e-44 | FFCP PHASE2:Hg19::chr11:114466397..114466426,-#_21a3aab7b5850e5a31044735944a0eac | p2@FAM55D |
| 1.63e-44 | FFCP PHASE1:Hg19::chr11:114466397..114466426,-#_21a3aab7b5850e5a31044735944a0eac | p2@FAM55D |
| 2.03e-44 | FFCP PHASE1:Hg19::chr15:40648275..40648301,+#_a88da10b4f7580b8ef02625d549456e4 | p@chr15:40648275..40648301, + |
| 2.03e-44 | FFCP PHASE2:Hg19::chr15:40648275..40648301,+#_a88da10b4f7580b8ef02625d549456e4 | p@chr15:40648275..40648301, + |
| 3.18e-44 | FFCP PHASE2:Hg19::chr1:167059705..167059714,-#_13380c68b39cfb475d2e702d67911e77 | p6@GPA33 |
| 3.18e-44 | FFCP PHASE1:Hg19::chr1:167059705..167059714,-#_13380c68b39cfb475d2e702d67911e77 | p6@GPA33 |
| 4.52e-44 | FFCP PHASE1:Mm9::chr14:93595014..93595015,-#_5cae384b8573e7f9c7bfb840e5b9ffcb | p@chr14:93595014..93595015, - |
| 4.52e-44 | FFCP PHASE1:Mm9::chr4:82849680..82849681,-#_5cae384b8573e7f9c7bfb840e5b9ffcb | p@chr4:82849680..82849681, - |
| 4.52e-44 | FFCP PHASE2:Mm9::chr18:44716456..44716461,+#_5cae384b8573e7f9c7bfb840e5b9ffcb | p@chr18:44716456..44716461, + |
| 4.52e-44 | FFCP PHASE1:Mm9::chr18:44716456..44716461,+#_5cae384b8573e7f9c7bfb840e5b9ffcb | p@chr18:44716456..44716461, + |
| 4.52e-44 | FFCP PHASE2:Mm9::chr14:93595014..93595015,-#_5cae384b8573e7f9c7bfb840e5b9ffcb | p@chr14:93595014..93595015, - |
| 4.52e-44 | FFCP PHASE2:Mm9::chr4:82849680..82849681,-#_5cae384b8573e7f9c7bfb840e5b9ffcb | p@chr4:82849680..82849681, - |
| 5.54e-44 | FFCP PHASE1:Hg19::chr4:57138437..57138479,+#_87f58eb7b441abbd4bfb24e7aac6b2fa | p1@KIAA1211 |
| 5.54e-44 | FFCP PHASE2:Hg19::chr4:57138437..57138479,+#_87f58eb7b441abbd4bfb24e7aac6b2fa | p1@KIAA1211 |
| 7.52e-44 | FFCP PHASE1:Mm9::chr7:148822638..148822643,-#_d9b5752f8a5df381abf2efb564088a05 | p@chr7:148822638..148822643, - |
| 7.52e-44 | FFCP PHASE2:Mm9::chr7:148822638..148822643,-#_d9b5752f8a5df381abf2efb564088a05 | p@chr7:148822638..148822643, - |
| 9.83e-43 | FFCP PHASE1:Hg19::chrX:100129340..100129353,-#_811ec7a0e750306dd509417bba5b4a1c | p2@NOX1 |
| 9.83e-43 | FFCP PHASE2:Hg19::chrX:100129340..100129353,-#_811ec7a0e750306dd509417bba5b4a1c | p2@NOX1 |
| 6.29e-41 | FFCP PHASE2:Hg19::chr16:86229728..86229756,+#_b28b86adccb786ffb6518fda7b1850e9 | p@chr16:86229728..86229756, + |
| 6.29e-41 | FFCP PHASE1:Hg19::chr16:86229728..86229756,+#_b28b86adccb786ffb6518fda7b1850e9 | p@chr16:86229728..86229756, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "The last portion of the digestive system, it extracts water and salt from solid wastes before they are eliminated from the body.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. Wallace et al, 2005.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
