UBERON:0001560: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=neck of organ | |name=neck of organ | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:19, 12 September 2014
| Name: | neck of organ | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Synonyms: | "organ neck" EXACT [] | ||
| Alt_id: | UBERON:FMA_45733-MA_0000589 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000064(organ part) |
|---|
Children
| is a: | UBERON:0000002 (uterine cervix) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10013-101C4 (cervix, adult, pool1)
- 10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
- 10530-107F8
- 10552-107I3 (cervical cancer cell line:D98-AH2)
- 10553-107I4 (cervical cancer cell line:ME-180)
- 10589-108D4 (argyrophil small cell carcinoma cell line:TC-YIK)
- 10598-108E4
- 10655-109B7
- 10754-110D7
- 10755-110D8
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001560 (neck of organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.22e-44 | FFCP PHASE1:Hg19::chr14:104394868..104394874,+#_5cf805f22de7660727e808135d75c93f | p5@TDRD9 |
| 1.22e-44 | FFCP PHASE2:Hg19::chr14:104394868..104394874,+#_5cf805f22de7660727e808135d75c93f | p5@TDRD9 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr14:57052405..57052416,+#_c0293cf5db285ab44302650b127d8d1c | p4@C14orf101 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr9:35237460..35237466,+#_c0293cf5db285ab44302650b127d8d1c | p@chr9:35237460..35237466, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:62030063..62030071,-#_c0293cf5db285ab44302650b127d8d1c | p@chr10:62030063..62030071, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:121056349..121056360,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:121056349..121056360, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:131117147..131117158,-#_c0293cf5db285ab44302650b127d8d1c | p@chr12:131117147..131117158, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr20:21918433..21918444,+#_c0293cf5db285ab44302650b127d8d1c | p@chr20:21918433..21918444, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr5:170105957..170105992,-#_c0293cf5db285ab44302650b127d8d1c | p@chr5:170105957..170105992, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:25661559..25661563,+#_c0293cf5db285ab44302650b127d8d1c | p@chr6:25661559..25661563, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:26911586..26911592,-#_c0293cf5db285ab44302650b127d8d1c | p9@SPAG5 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:129597668..129597672,+#_c0293cf5db285ab44302650b127d8d1c | p@chr6:129597668..129597672, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:54417667..54417685,+#_c0293cf5db285ab44302650b127d8d1c | p9@LRRC42 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:41508303..41508308,-#_c0293cf5db285ab44302650b127d8d1c | p2@NKX6-3 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr7:150871938..150871949,-#_c0293cf5db285ab44302650b127d8d1c | p3@GBX1 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:79225428..79225433,-#_c0293cf5db285ab44302650b127d8d1c | p@chr17:79225428..79225433, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:41485173..41485181,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41485173..41485181, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:187008638..187008641,+#_c0293cf5db285ab44302650b127d8d1c | p10@ENST00000541007, p6@uc003frl.2 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr20:20392704..20392711,-#_c0293cf5db285ab44302650b127d8d1c | p@chr20:20392704..20392711, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:121056304..121056311,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:121056304..121056311, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr20:45400010..45400026,-#_c0293cf5db285ab44302650b127d8d1c | p@chr20:45400010..45400026, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr7:57928958..57928964,-#_c0293cf5db285ab44302650b127d8d1c | p@chr7:57928958..57928964, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:2436040..2436051,-#_c0293cf5db285ab44302650b127d8d1c | p@chr11:2436040..2436051, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:131117129..131117135,-#_c0293cf5db285ab44302650b127d8d1c | p@chr12:131117129..131117135, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:49467646..49467657,+#_c0293cf5db285ab44302650b127d8d1c | p1@GLYATL3 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr9:35237473..35237478,+#_c0293cf5db285ab44302650b127d8d1c | p@chr9:35237473..35237478, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:152084846..152084856,+#_c0293cf5db285ab44302650b127d8d1c | p@chr6:152084846..152084856, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr19:7184803..7184814,-#_c0293cf5db285ab44302650b127d8d1c | p@chr19:7184803..7184814, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:2436019..2436030,-#_c0293cf5db285ab44302650b127d8d1c | p@chr11:2436019..2436030, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:39290815..39290820,-#_c0293cf5db285ab44302650b127d8d1c | p6@KCNK16 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:182546258..182546267,+#_c0293cf5db285ab44302650b127d8d1c | p@chr2:182546258..182546267, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:39755914..39755961,-#_c0293cf5db285ab44302650b127d8d1c | p@chr17:39755914..39755961, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:33464773..33464782,+#_c0293cf5db285ab44302650b127d8d1c | p@chr8:33464773..33464782, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr7:127258120..127258138,-#_c0293cf5db285ab44302650b127d8d1c | p3@PAX4 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:9059355..9059366,-#_c0293cf5db285ab44302650b127d8d1c | p@chr2:9059355..9059366, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:26911596..26911605,-#_c0293cf5db285ab44302650b127d8d1c | p8@SPAG5 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:14849414..14849417,-#_c0293cf5db285ab44302650b127d8d1c | p8@GUCY2C |
| 4.27e-34 | FFCP PHASE2:Hg19::chr22:47425875..47425879,-#_c0293cf5db285ab44302650b127d8d1c | p@chr22:47425875..47425879, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr20:21918450..21918454,+#_c0293cf5db285ab44302650b127d8d1c | p@chr20:21918450..21918454, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:62029969..62029974,-#_c0293cf5db285ab44302650b127d8d1c | p@chr10:62029969..62029974, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:25661559..25661563,+#_c0293cf5db285ab44302650b127d8d1c | p@chr6:25661559..25661563, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr22:44377129..44377137,+#_c0293cf5db285ab44302650b127d8d1c | p@chr22:44377129..44377137, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:121066549..121066554,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:121066549..121066554, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr20:20392704..20392711,-#_c0293cf5db285ab44302650b127d8d1c | p@chr20:20392704..20392711, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr2:9059377..9059382,-#_c0293cf5db285ab44302650b127d8d1c | p@chr2:9059377..9059382, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:152084870..152084873,+#_c0293cf5db285ab44302650b127d8d1c | p@chr6:152084870..152084873, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr19:7184828..7184838,-#_c0293cf5db285ab44302650b127d8d1c | p@chr19:7184828..7184838, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:49467646..49467657,+#_c0293cf5db285ab44302650b127d8d1c | p1@GLYATL3 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:2428348..2428358,-#_c0293cf5db285ab44302650b127d8d1c | p@chr11:2428348..2428358, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:41485173..41485181,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41485173..41485181, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:121056549..121056554,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:121056549..121056554, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:70826186..70826193,-#_c0293cf5db285ab44302650b127d8d1c | p4@ENST00000413943 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:80963666..80963669,-#_c0293cf5db285ab44302650b127d8d1c | p37@TPD52 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr9:35237473..35237478,+#_c0293cf5db285ab44302650b127d8d1c | p@chr9:35237473..35237478, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr5:40984132..40984133,+#_c0293cf5db285ab44302650b127d8d1c | p@chr5:40984132..40984133, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:79742692..79742706,+#_c0293cf5db285ab44302650b127d8d1c | p@chr11:79742692..79742706, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr20:2361545..2361557,+#_c0293cf5db285ab44302650b127d8d1c | p1@TGM6 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:62030084..62030091,-#_c0293cf5db285ab44302650b127d8d1c | p@chr10:62030084..62030091, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr22:47425875..47425879,-#_c0293cf5db285ab44302650b127d8d1c | p@chr22:47425875..47425879, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:4501551..4501558,-#_c0293cf5db285ab44302650b127d8d1c | p@chr4:4501551..4501558, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:131117194..131117202,-#_c0293cf5db285ab44302650b127d8d1c | p@chr12:131117194..131117202, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr20:21918450..21918454,+#_c0293cf5db285ab44302650b127d8d1c | p@chr20:21918450..21918454, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:26911596..26911605,-#_c0293cf5db285ab44302650b127d8d1c | p8@SPAG5 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr18:74350663..74350688,-#_c0293cf5db285ab44302650b127d8d1c | p@chr18:74350663..74350688, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:207193762..207193766,+#_c0293cf5db285ab44302650b127d8d1c | p@chr1:207193762..207193766, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr22:44377129..44377137,+#_c0293cf5db285ab44302650b127d8d1c | p@chr22:44377129..44377137, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:163124750..163124764,-#_c0293cf5db285ab44302650b127d8d1c | p@chr4:163124750..163124764, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:41485201..41485208,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41485201..41485208, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:121056349..121056360,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:121056349..121056360, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:2436082..2436085,-#_c0293cf5db285ab44302650b127d8d1c | p@chr11:2436082..2436085, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:131117147..131117158,-#_c0293cf5db285ab44302650b127d8d1c | p@chr12:131117147..131117158, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:49467678..49467693,+#_c0293cf5db285ab44302650b127d8d1c | p2@GLYATL3 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:18689637..18689645,+#_c0293cf5db285ab44302650b127d8d1c | p28@CACNB2 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:152084870..152084873,+#_c0293cf5db285ab44302650b127d8d1c | p@chr6:152084870..152084873, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr19:7184828..7184838,-#_c0293cf5db285ab44302650b127d8d1c | p@chr19:7184828..7184838, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:22001308..22001310,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:22001308..22001310, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr21:47588743..47588750,-#_c0293cf5db285ab44302650b127d8d1c | p9@C21orf56 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:2436040..2436051,-#_c0293cf5db285ab44302650b127d8d1c | p@chr11:2436040..2436051, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr5:160356414..160356417,-#_c0293cf5db285ab44302650b127d8d1c | p@chr5:160356414..160356417, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:9059377..9059382,-#_c0293cf5db285ab44302650b127d8d1c | p@chr2:9059377..9059382, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:70826186..70826193,-#_c0293cf5db285ab44302650b127d8d1c | p4@ENST00000413943 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:27892902..27892907,+#_c0293cf5db285ab44302650b127d8d1c | p@chr17:27892902..27892907, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:80963666..80963669,-#_c0293cf5db285ab44302650b127d8d1c | p37@TPD52 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr7:57928958..57928964,-#_c0293cf5db285ab44302650b127d8d1c | p@chr7:57928958..57928964, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr20:2361545..2361557,+#_c0293cf5db285ab44302650b127d8d1c | p1@TGM6 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr20:21918470..21918480,+#_c0293cf5db285ab44302650b127d8d1c | p@chr20:21918470..21918480, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:153371709..153371712,-#_c0293cf5db285ab44302650b127d8d1c | p@chr1:153371709..153371712, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:79225428..79225433,-#_c0293cf5db285ab44302650b127d8d1c | p@chr17:79225428..79225433, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:55205086..55205090,-#_c0293cf5db285ab44302650b127d8d1c | p@chr3:55205086..55205090, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:99550654..99550658,-#_c0293cf5db285ab44302650b127d8d1c | p@chr10:99550654..99550658, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr18:74350663..74350688,-#_c0293cf5db285ab44302650b127d8d1c | p@chr18:74350663..74350688, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:4501551..4501558,-#_c0293cf5db285ab44302650b127d8d1c | p@chr4:4501551..4501558, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr14:23465559..23465575,-#_c0293cf5db285ab44302650b127d8d1c | p@chr14:23465559..23465575, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:14849414..14849417,-#_c0293cf5db285ab44302650b127d8d1c | p8@GUCY2C |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:41484957..41484961,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41484957..41484961, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr7:127258190..127258201,-#_c0293cf5db285ab44302650b127d8d1c | p2@PAX4 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:152084876..152084885,+#_c0293cf5db285ab44302650b127d8d1c | p@chr6:152084876..152084885, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:49467678..49467693,+#_c0293cf5db285ab44302650b127d8d1c | p2@GLYATL3 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:181432833..181432842,+#_c0293cf5db285ab44302650b127d8d1c | p@chr3:181432833..181432842, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:163124750..163124764,-#_c0293cf5db285ab44302650b127d8d1c | p@chr4:163124750..163124764, - |
