UBERON:0002036: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=striated muscle tissue | |name=striated muscle tissue | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:24, 12 September 2014
| Name: | striated muscle tissue | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Tissue which consists of striated muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue, Cardiac muscle tissue[FMA]." [FMA:67905, Wikipedia:Striated_muscle] | ||
| Xrefs: |
| ||
| Synonyms: | "striated muscle" EXACT [] | ||
| Alt_id: | UBERON:FMA_67905-MA_0002438 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002385(muscle tissue) |
|---|
Children
| is a: | UBERON:0001133 (cardiac muscle tissue),UBERON:0001134 (skeletal muscle tissue) |
|---|---|
| disjoint from: | UBERON:0001135 (smooth muscle tissue) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10023-101D5 (skeletal muscle, adult, pool1)
- 10066-101I3 (skeletal muscle, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10094-102C4
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10300-104H3
- 10310-104I4
- 10328-105B4
- 10338-105C5
... further results Mouse (Mus musculus)
- 10023-101D5 (skeletal muscle, adult, pool1)
- 10066-101I3 (skeletal muscle, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10094-102C4
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10300-104H3
- 10310-104I4
- 10328-105B4
- 10338-105C5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002036 (striated muscle tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.24e-58 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_c1396a06b3c45074175368722903e8c8 | p@chrX:160838683..160838694, + |
| 5.24e-58 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_c1396a06b3c45074175368722903e8c8 | p@chrX:160838683..160838694, + |
| 5.11e-50 | FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_2b2ad51dd68f68ea8fbbe1a435dc9f90 | p@chrX:65748600..65748616, + |
| 5.11e-50 | FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_2b2ad51dd68f68ea8fbbe1a435dc9f90 | p@chr12:105433069..105433075, - |
| 5.11e-50 | FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_2b2ad51dd68f68ea8fbbe1a435dc9f90 | p@chr12:105433069..105433075, - |
| 5.11e-50 | FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_2b2ad51dd68f68ea8fbbe1a435dc9f90 | p@chrX:65748600..65748616, + |
| 1.47e-48 | FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_4e2bfb997a0e623239f9d8cccf8063a1 | p@chrX:160838787..160838800, + |
| 1.47e-48 | FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_4e2bfb997a0e623239f9d8cccf8063a1 | p@chrX:160838787..160838800, + |
| 3.13e-47 | FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_f3be3f99410d938fd477ad046f1629ba | p@chr6:53359400..53359406, + |
| 3.13e-47 | FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_f3be3f99410d938fd477ad046f1629ba | p@chr6:53359400..53359406, + |
| 8.42e-44 | FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_e7befbb7bdb2437d9d8e3124f39ab071 | p@chr11:81849982..81850000, + |
| 8.42e-44 | FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_e7befbb7bdb2437d9d8e3124f39ab071 | p@chr11:81849982..81850000, + |
| 1.15e-40 | FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_76784799e6491aa50b68672d55fb617a | p@chr17:14813242..14813246, - |
| 1.15e-40 | FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_76784799e6491aa50b68672d55fb617a | p@chr17:14813242..14813246, - |
| 3.7e-39 | FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_81daa0977a89e27cd52383904b5cc8c3 | p4@Gpr39 |
| 3.7e-39 | FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_81daa0977a89e27cd52383904b5cc8c3 | p4@Gpr39 |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_1df088f2fa05de1ef69cbb0e577d1af6 | p@chrX:160840025..160840037, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_1df088f2fa05de1ef69cbb0e577d1af6 | p@chrX:160823859..160823870, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_1df088f2fa05de1ef69cbb0e577d1af6 | p@chrX:160823859..160823870, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_1df088f2fa05de1ef69cbb0e577d1af6 | p@chrX:160840025..160840037, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_1df088f2fa05de1ef69cbb0e577d1af6 | p@chrX:160840048..160840057, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_1df088f2fa05de1ef69cbb0e577d1af6 | p@chrX:160840048..160840057, + |
| 4.61e-38 | FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_e55e9235a2a86ba9ec914871d43437bf | p2@LRRC17 |
| 4.61e-38 | FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_e55e9235a2a86ba9ec914871d43437bf | p2@LRRC17 |
| 6.16e-37 | FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_4122424b04cb2fdc47babb836ae9f2f2 | p8@ARHGAP22 |
| 6.16e-37 | FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_4122424b04cb2fdc47babb836ae9f2f2 | p8@ARHGAP22 |
| 7.01e-37 | FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_e3bd9eabf87bdd3e07252b8c640e9ac0 | p@chr9:35685631..35685657, + |
| 7.01e-37 | FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_e3bd9eabf87bdd3e07252b8c640e9ac0 | p@chr9:35685631..35685657, + |
| 9.63e-36 | FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_b0f32e03e5d7ce776c05a8ae70c866e1 | p4@ARHGAP22 |
| 9.63e-36 | FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_b0f32e03e5d7ce776c05a8ae70c866e1 | p4@ARHGAP22 |
| 3.31e-35 | FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_b03ba9e37626f4e13aa0964950f7e558 | p11@Fam198b |
| 3.31e-35 | FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_b03ba9e37626f4e13aa0964950f7e558 | p11@Fam198b |
| 3.69e-35 | FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_17971612a991563b9a94767d5926154e | p@chr1:127574253..127574264, + |
| 3.69e-35 | FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_17971612a991563b9a94767d5926154e | p@chr1:127574253..127574264, + |
| 4.0e-35 | FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_deda11883ac7875fe754f16eb2da64f1 | p1@LRRC17 |
| 4.0e-35 | FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_deda11883ac7875fe754f16eb2da64f1 | p1@LRRC17 |
| 5.09e-35 | FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_a638851601d9a05772912846625a0241 | p7@Gpr39 |
| 5.09e-35 | FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_a638851601d9a05772912846625a0241 | p7@Gpr39 |
| 5.48e-35 | FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_1fec02c44abe4dba0d45c73c54089ce2 | p@chr11:102661517..102661541, - |
| 5.48e-35 | FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_1fec02c44abe4dba0d45c73c54089ce2 | p@chr11:102661517..102661541, - |
| 5.98e-35 | FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_df0742da62d607669bf3f0807ea68657 | p11@Gpr39 |
| 5.98e-35 | FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_df0742da62d607669bf3f0807ea68657 | p11@Gpr39 |
| 7.03e-35 | FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_1f58b1870fd312ff852e1a47ef3f5fc2 | p@chrX:160839768..160839780, + |
| 7.03e-35 | FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_1f58b1870fd312ff852e1a47ef3f5fc2 | p@chrX:160839768..160839780, + |
| 1.33e-34 | FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_7053cd8e8c3abe520f5f00c2101b8460 | p8@Gpr39 |
| 1.33e-34 | FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_7053cd8e8c3abe520f5f00c2101b8460 | p8@Gpr39 |
| 1.83e-34 | FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_ce0c804538be212552124e91f8b7888f | p@chr4:74703497..74703511, + |
| 1.83e-34 | FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_ce0c804538be212552124e91f8b7888f | p@chr4:74703497..74703511, + |
| 5.92e-34 | FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_8c2c037da8f74c6cfb6a446851b99619 | p@chr4:7846444..7846449, - |
| 5.92e-34 | FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_8c2c037da8f74c6cfb6a446851b99619 | p@chr4:7846444..7846449, - |
| 2.08e-33 | FFCP PHASE2:Hg19::chr7:102553382..102553397,+#_d2ce4760a400dd9c304249d3588d47cc | p3@LRRC17 |
| 2.08e-33 | FFCP PHASE1:Hg19::chr7:102553382..102553397,+#_d2ce4760a400dd9c304249d3588d47cc | p3@LRRC17 |
| 1.42e-32 | FFCP PHASE1:Hg19::chr4:74702338..74702349,+#_e701d198fb612842ef2d70a8ee62d8e1 | p2@CXCL6 |
| 1.42e-32 | FFCP PHASE2:Hg19::chr4:74702338..74702349,+#_e701d198fb612842ef2d70a8ee62d8e1 | p2@CXCL6 |
| 1.85e-32 | FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_913f3ba915d14548b20858e8ffc9d307 | p@chr9:35689148..35689192, + |
| 1.85e-32 | FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_913f3ba915d14548b20858e8ffc9d307 | p@chr9:35689148..35689192, + |
| 2.15e-32 | FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_fe69b461a41c006fadc906e9fa2292ac | p2@SASH1 |
| 2.15e-32 | FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_fe69b461a41c006fadc906e9fa2292ac | p2@SASH1 |
| 2.89e-32 | FFCP PHASE2:Hg19::chr4:169059590..169059615,+#_29aca54461420db25d3262fb95e29510 | p@chr4:169059590..169059615, + |
| 2.89e-32 | FFCP PHASE1:Hg19::chr4:169059590..169059615,+#_29aca54461420db25d3262fb95e29510 | p@chr4:169059590..169059615, + |
| 3.77e-32 | FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_7e21447a32121013393df634e78a68d1 | p@chr2:134548872..134548879, - |
| 3.77e-32 | FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_7e21447a32121013393df634e78a68d1 | p@chr2:134548872..134548879, - |
| 3.94e-32 | FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_96dc5a2247e8949b32c84afd48fb3baa | p@chr7:96658543..96658553, - |
| 3.94e-32 | FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_96dc5a2247e8949b32c84afd48fb3baa | p@chr7:96658543..96658553, - |
| 4.14e-32 | FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_12c6fd127cc9b0e395836cf6b8323626 | p3@IFI27L2 |
| 4.14e-32 | FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_12c6fd127cc9b0e395836cf6b8323626 | p3@IFI27L2 |
| 4.65e-32 | FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_e3fb3a96f94258287b03127599ac971a | p@chr9:35684475..35684520, + |
| 4.65e-32 | FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_e3fb3a96f94258287b03127599ac971a | p@chr9:35684475..35684520, + |
| 8.06e-32 | FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_348172ac501c55ec43f729e54fe1535b | p1@CU675118 |
| 8.06e-32 | FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_348172ac501c55ec43f729e54fe1535b | p1@CU675118 |
| 1.33e-31 | FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_abb6b080b72cee15928eecd201d472ae | p2@Il6 |
| 1.33e-31 | FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_abb6b080b72cee15928eecd201d472ae | p@chr7:91081998..91082010, - |
| 1.33e-31 | FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_abb6b080b72cee15928eecd201d472ae | p2@Il6 |
| 1.33e-31 | FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_abb6b080b72cee15928eecd201d472ae | p@chr7:91081998..91082010, - |
| 1.52e-31 | FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_377ec997b79babb2aa5ce0ba43d44ba5 | p@chr9:35685445..35685517, + |
| 1.52e-31 | FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_377ec997b79babb2aa5ce0ba43d44ba5 | p@chr9:35685445..35685517, + |
| 1.59e-31 | FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_6ac2bf1716f7cfc31dc5eb5187f87185 | p@chr10:67598037..67598049, - |
| 1.59e-31 | FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_6ac2bf1716f7cfc31dc5eb5187f87185 | p@chr10:67598037..67598049, - |
| 2.72e-31 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_1a8418f9225863234bd61ddda0a2eb05 | p@chr2:65009852..65009866, - |
| 2.72e-31 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_1a8418f9225863234bd61ddda0a2eb05 | p@chr2:65009852..65009866, - |
| 2.8e-31 | FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_bf4312ca452a83aad9bf58d2e481d790 | p@chr18:52678391..52678395, - |
| 2.8e-31 | FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_bf4312ca452a83aad9bf58d2e481d790 | p@chr18:52678391..52678395, - |
| 3.27e-31 | FFCP PHASE1:Hg19::chr9:118916063..118916077,+#_1381228dbc7b3f0c347768ebb9e78e7b | p2@PAPPA |
| 3.27e-31 | FFCP PHASE2:Hg19::chr9:118916063..118916077,+#_1381228dbc7b3f0c347768ebb9e78e7b | p2@PAPPA |
| 4.08e-31 | FFCP PHASE2:Hg19::chr4:74702666..74702694,+#_274bddc96fc6d02fa61f7ca35b42e26e | p3@CXCL6 |
| 4.08e-31 | FFCP PHASE1:Hg19::chr4:74702666..74702694,+#_274bddc96fc6d02fa61f7ca35b42e26e | p3@CXCL6 |
| 6.01e-31 | FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_a88c8b54b70d65a593f325683c785b09 | p2@RCN3 |
| 6.01e-31 | FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_a88c8b54b70d65a593f325683c785b09 | p2@RCN3 |
| 7.63e-31 | FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_10d13dce7605abae77711db3f9514b69 | p2@ELTD1 |
| 7.63e-31 | FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_10d13dce7605abae77711db3f9514b69 | p2@ELTD1 |
| 7.65e-31 | FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_971bc4e9bcaeab27786b8bde9e6b0c07 | p@chr6:91222095..91222107, + |
| 7.65e-31 | FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_971bc4e9bcaeab27786b8bde9e6b0c07 | p@chr6:91222095..91222107, + |
| 1.01e-30 | FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_e9e67e4b099d296b4c5eb142b0cb9a96 | p9@Kctd10 |
| 1.01e-30 | FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_e9e67e4b099d296b4c5eb142b0cb9a96 | p9@Kctd10 |
| 1.17e-30 | FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_02fd5beb7accae741567bd577b28439f | p6@Gpr39 |
| 1.17e-30 | FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_02fd5beb7accae741567bd577b28439f | p6@Gpr39 |
| 1.35e-30 | FFCP PHASE1:Hg19::chr4:74703963..74703975,+#_3b9041d3fb78d20c51aeb65ee449b57c | p@chr4:74703963..74703975, + |
| 1.35e-30 | FFCP PHASE2:Hg19::chr4:74703963..74703975,+#_3b9041d3fb78d20c51aeb65ee449b57c | p@chr4:74703963..74703975, + |
| 4.78e-30 | FFCP PHASE2:Hg19::chr14:96722539..96722555,+#_152e132b969f90aa7a931086265e4032 | p1@BDKRB1 |
| 4.78e-30 | FFCP PHASE1:Hg19::chr14:96722539..96722555,+#_152e132b969f90aa7a931086265e4032 | p1@BDKRB1 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Voluntary muscle tissue arranged in bundles of fibers.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
