UBERON:0007844: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 12: | Line 12: | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name= | |name=cartilage element | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 18:03, 12 September 2014
| Name: | cartilage element | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Skeletal element that is composed of cartilage tissue and may be permanent or transient." [VSAO:curator] | ||
| Xrefs: |
| ||
| Synonyms: |
"cartilage" RELATED [VSAO:0000000] "cartilage element" EXACT [] "cartilage organ" EXACT [FMA:55107] "chondrogenic element" EXACT [VSAO:0000000] | ||
| Comments: | AO notes: TAO still mixes tissue and element | ||
| Subset: | organ_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004765(skeletal element) |
|---|---|
| develops_from: | UBERON:0005863(cartilaginous condensation) |
Children
| is a: | UBERON:0010885 (hindlimb cartilage element),UBERON:0011135 (intervertebral cartilage) |
|---|---|
| develops from: | UBERON:0002513 (endochondral bone) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11248-116E6 (Anulus Pulposus Cell, donor1)
- 11252-116F1 (Nucleus Pulposus Cell, donor1)
- 11409-118E5 (Nucleus Pulposus Cell, donor2)
- 11462-119B4 (Nucleus Pulposus Cell, donor3)
- 11463-119B5 (Anulus Pulposus Cell, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007844 (cartilage element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.25e-162 | FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_4c2ec95e9e84c55dda77da68ef4c880a | p@chr3:174737010..174737023, + |
| 1.25e-162 | FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_4c2ec95e9e84c55dda77da68ef4c880a | p@chr3:174737010..174737023, + |
| 3.92e-140 | FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_2bcd42168fce003e0c3bfaa6a5bb6df9 | p4@PAX1 |
| 3.92e-140 | FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_2bcd42168fce003e0c3bfaa6a5bb6df9 | p4@PAX1 |
| 4.22e-99 | FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_fd5dff9fc10af0bf3d0c8b68c715e4f1 | p@chr5:30104176..30104187, - |
| 4.22e-99 | FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_fd5dff9fc10af0bf3d0c8b68c715e4f1 | p@chr5:30104176..30104187, - |
| 1.06e-78 | FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_2f6e0293416017a5443f80dff78fa286 | p4@NKX3-2 |
| 1.06e-78 | FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_2f6e0293416017a5443f80dff78fa286 | p4@NKX3-2 |
| 2.52e-71 | FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_d19b58e7be1089708ddd9fd9521566f8 | p@chr9:114135497..114135526, - |
| 2.52e-71 | FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_d19b58e7be1089708ddd9fd9521566f8 | p@chr9:114135497..114135526, - |
| 7.4e-71 | FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_1085d47587e78793ff475e326323bef9 | p@chr2:241897125..241897142, - |
| 7.4e-71 | FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_1085d47587e78793ff475e326323bef9 | p@chr2:241897125..241897142, - |
| 6.33e-70 | FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_b5091c4bd812e811e14386a7d2c57d21 | p@chr3:80727046..80727051, - |
| 6.33e-70 | FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_b5091c4bd812e811e14386a7d2c57d21 | p@chr3:80727046..80727051, - |
| 4.8e-67 | FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_a3a7139287be106b64f4ec62bb851edf | p15@SNED1 |
| 4.8e-67 | FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_a3a7139287be106b64f4ec62bb851edf | p15@SNED1 |
| 1.24e-66 | FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_998ac72978b4baa8872cc7c59c374146 | p20@CAPZB |
| 1.24e-66 | FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_998ac72978b4baa8872cc7c59c374146 | p20@CAPZB |
| 1.26e-62 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_bfc61f0cd11532feaf31c297902f0968 | p@chr1:19778678..19778689, - |
| 1.26e-62 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_bfc61f0cd11532feaf31c297902f0968 | p@chr1:19778678..19778689, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_5c4b8d25b6890a8dde141ba731b30434 | p@chr2:241897189..241897221, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_5c4b8d25b6890a8dde141ba731b30434 | p@chr2:241897189..241897221, - |
| 1.55e-57 | FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_22bd8fa31552c05234366680f4737081 | p1@uc010aki.1 |
| 1.55e-57 | FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_22bd8fa31552c05234366680f4737081 | p1@uc010aki.1 |
| 4.09e-56 | FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_9c47f71ab4cfc289468a0d667ba1c70a | p6@SIX4 |
| 4.09e-56 | FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_9c47f71ab4cfc289468a0d667ba1c70a | p6@SIX4 |
| 3.74e-53 | FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_17559775f72490a9bc3a85dc1c9123cb | p3@uc010aki.1 |
| 3.74e-53 | FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_17559775f72490a9bc3a85dc1c9123cb | p3@uc010aki.1 |
| 1.15e-51 | FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_9a5f3e08834cb921953aa9848af9c624 | p3@PAX1 |
| 1.15e-51 | FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_9a5f3e08834cb921953aa9848af9c624 | p3@PAX1 |
| 2.3e-51 | FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_a4c57be1c957f38d862b316c10d6531b | p@chr10:81923378..81923389, - |
| 2.3e-51 | FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_a4c57be1c957f38d862b316c10d6531b | p@chr10:81923378..81923389, - |
| 3.24e-51 | FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_1bb76e95ce2ff62869448879cc6723bc | p@chr2:12248310..12248334, - |
| 3.24e-51 | FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_1bb76e95ce2ff62869448879cc6723bc | p@chr2:12248310..12248334, - |
| 8.0e-51 | FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_10404810aa853646fd63d699e5ddc18b | p19@HDAC9 |
| 8.0e-51 | FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_10404810aa853646fd63d699e5ddc18b | p19@HDAC9 |
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_1d5fecb23c075fab671abbf093a957ce | p26@Myo18a |
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_1d5fecb23c075fab671abbf093a957ce | p26@Myo18a |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_05ef4c2858912242e5c1155001b6f636 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_05ef4c2858912242e5c1155001b6f636 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_05ef4c2858912242e5c1155001b6f636 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_05ef4c2858912242e5c1155001b6f636 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_05ef4c2858912242e5c1155001b6f636 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_05ef4c2858912242e5c1155001b6f636 | p@chr9:21934585..21934591, - |
| 5.06e-49 | FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_ba45d1d5326330a3c4c5725b030bdc49 | p@chr7:158224707..158224729, - |
| 5.06e-49 | FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_ba45d1d5326330a3c4c5725b030bdc49 | p@chr7:158224707..158224729, - |
| 5.24e-48 | FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_c52f380569069fcdb00e5012ded1d0b0 | p@chr1:65888177..65888194, + |
| 5.24e-48 | FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_c52f380569069fcdb00e5012ded1d0b0 | p@chr1:65888177..65888194, + |
| 2.98e-45 | FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_c08288d34cdbf769ff708a98e027466a | p3@NKX3-2 |
| 2.98e-45 | FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_c08288d34cdbf769ff708a98e027466a | p3@NKX3-2 |
| 2.92e-44 | FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_ce5020629f0d96ab70fdc009d9120d83 | p1@MGC27382 |
| 2.92e-44 | FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_ce5020629f0d96ab70fdc009d9120d83 | p1@MGC27382 |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_bbe3e90256ab4e53ec43b8f42cd9a0a0 | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_bbe3e90256ab4e53ec43b8f42cd9a0a0 | p@chr6:51525810..51525817, + |
| 1.71e-43 | FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_e22cb3939371f88af1ab6e1a9a0d5d1d | p18@HDAC9 |
| 1.71e-43 | FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_e22cb3939371f88af1ab6e1a9a0d5d1d | p18@HDAC9 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_058a144febb4026906076a760e3ce106 | p@chr13:24914614..24914622, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_058a144febb4026906076a760e3ce106 | p@chr9:33028063..33028067, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_058a144febb4026906076a760e3ce106 | p@chr13:24914614..24914622, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_058a144febb4026906076a760e3ce106 | p@chr9:33028063..33028067, - |
| 1.64e-40 | FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_da0c6a975d9214793dd53ba681a02c19 | p1@PAX1 |
| 1.64e-40 | FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_da0c6a975d9214793dd53ba681a02c19 | p1@PAX1 |
| 1.81e-40 | FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_9e3df8ed69efe7060816350a0c07a968 | p5@PTGFR |
| 1.81e-40 | FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_9e3df8ed69efe7060816350a0c07a968 | p5@PTGFR |
| 2.13e-40 | FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_4763b75d9a6cea458a4f8d2af5e47ae1 | p@chr2:241897363..241897398, + |
| 2.13e-40 | FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_4763b75d9a6cea458a4f8d2af5e47ae1 | p@chr2:241897363..241897398, + |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_6c0a116655cc893ea837b3986089f019 | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_6c0a116655cc893ea837b3986089f019 | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_9b27e08b1688b4a32bc67b187fe3a31c | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_9b27e08b1688b4a32bc67b187fe3a31c | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_9b27e08b1688b4a32bc67b187fe3a31c | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_9b27e08b1688b4a32bc67b187fe3a31c | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_9b27e08b1688b4a32bc67b187fe3a31c | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_9b27e08b1688b4a32bc67b187fe3a31c | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_9b27e08b1688b4a32bc67b187fe3a31c | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_9b27e08b1688b4a32bc67b187fe3a31c | p@chr16:24096441..24096449, + |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_1d57c2e8f5a65e838f28b87d695aac08 | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_1d57c2e8f5a65e838f28b87d695aac08 | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_bb833e7537797c189aaa792cb8a76ca2 | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_bb833e7537797c189aaa792cb8a76ca2 | p@chr6:51525869..51525891, + |
| 3.04e-39 | FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_42cad67c6dc24a307f674808e359188c | p2@PAX1 |
| 3.04e-39 | FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_42cad67c6dc24a307f674808e359188c | p2@PAX1 |
| 7.19e-39 | FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_76ab97e2fa2db8ece03e356d9280d60a | p16@HDAC9 |
| 7.19e-39 | FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_76ab97e2fa2db8ece03e356d9280d60a | p@chr5:140887761..140887777, + |
| 7.19e-39 | FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_76ab97e2fa2db8ece03e356d9280d60a | p16@HDAC9 |
| 7.19e-39 | FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_76ab97e2fa2db8ece03e356d9280d60a | p@chr5:140887761..140887777, + |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_d701314b31332efd21b17fcdcca9f59c | p3@Asb16 |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_d701314b31332efd21b17fcdcca9f59c | p3@Asb16 |
| 1.24e-38 | FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_cc9ca7c5c9adbed141ad405d45a632f2 | p4@NUP54 |
| 1.24e-38 | FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_cc9ca7c5c9adbed141ad405d45a632f2 | p4@NUP54 |
| 2.08e-38 | FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_9cd110c464013aa1ea12b1bc632f89b8 | p@chr2:241938405..241938416, + |
| 2.08e-38 | FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_9cd110c464013aa1ea12b1bc632f89b8 | p@chr2:241938405..241938416, + |
| 3.34e-38 | FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_4f6a0bd45e15799bf83e186978dbad9e | p1@NKX3-2 |
| 3.34e-38 | FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_4f6a0bd45e15799bf83e186978dbad9e | p1@NKX3-2 |
| 3.68e-38 | FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_448f43ad005308ff7155454ff4be04d2 | p10@SYNJ2 |
| 3.68e-38 | FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_448f43ad005308ff7155454ff4be04d2 | p10@SYNJ2 |
| 5.39e-38 | FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_7148c5b1faccd8d10998afd1fa925130 | p@chr9:16138889..16138902, - |
| 5.39e-38 | FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_7148c5b1faccd8d10998afd1fa925130 | p@chr9:16138889..16138902, - |
| 8.66e-38 | FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_88e51ba5d296fda1351978db32fbee65 | p2@ENST00000518706 |
| 8.66e-38 | FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_88e51ba5d296fda1351978db32fbee65 | p2@ENST00000518706 |
