UBERON:0008874: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=pulmonary acinus | |name=pulmonary acinus | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002048 | |part_of=UBERON:0002048 | ||
Latest revision as of 18:04, 12 September 2014
| Name: | pulmonary acinus | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "the part of the airway consisting of a respiratory bronchiole and all of its branches" [MP:0010911, Wikipedia:Acinus#The_Lungs] | ||
| Xrefs: |
| ||
| Synonyms: | "primary pulmonary lobule" EXACT [FMA:7313] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0010368(pulmonary lobule) |
|---|---|
| part_of: | UBERON:0002048(lung) |
Children
| part of: | UBERON:0002169 (alveolar sac) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11510-119G7 (Alveolar Epithelial Cells, donor1)
- 11671-122G6 (Alveolar Epithelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008874 (pulmonary acinus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:101691056..101691064,-#_1c84cd40cafbf351af24044fa46391e3 | p13@DNMBP |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:2779236..2779242,-#_1c84cd40cafbf351af24044fa46391e3 | p12@CPXM1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr14:36536932..36536937,-#_1c84cd40cafbf351af24044fa46391e3 | p@chr14:36536932..36536937, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:2779313..2779314,-#_1c84cd40cafbf351af24044fa46391e3 | p16@CPXM1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr6:137314390..137314394,-#_1c84cd40cafbf351af24044fa46391e3 | p1@ENST00000418699, p1@ENST00000432330 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:87647430..87647437,-#_1c84cd40cafbf351af24044fa46391e3 | p@chr3:87647430..87647437, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:101690855..101690861,-#_1c84cd40cafbf351af24044fa46391e3 | p14@DNMBP |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:63511856..63511858,-#_1c84cd40cafbf351af24044fa46391e3 | p@chr17:63511856..63511858, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr6:137314390..137314394,-#_1c84cd40cafbf351af24044fa46391e3 | p1@ENST00000418699, p1@ENST00000432330 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:2779313..2779314,-#_1c84cd40cafbf351af24044fa46391e3 | p16@CPXM1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:87647430..87647437,-#_1c84cd40cafbf351af24044fa46391e3 | p@chr3:87647430..87647437, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr16:11118533..11118538,+#_1c84cd40cafbf351af24044fa46391e3 | p12@CLEC16A |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:13574618..13574636,-#_1c84cd40cafbf351af24044fa46391e3 | p@chr17:13574618..13574636, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr7:63539651..63539654,+#_1c84cd40cafbf351af24044fa46391e3 | p1@ENST00000430271 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:101691056..101691064,-#_1c84cd40cafbf351af24044fa46391e3 | p13@DNMBP |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:2779140..2779150,-#_1c84cd40cafbf351af24044fa46391e3 | p9@CPXM1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr7:63539651..63539654,+#_1c84cd40cafbf351af24044fa46391e3 | p1@ENST00000430271 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr14:36536932..36536937,-#_1c84cd40cafbf351af24044fa46391e3 | p@chr14:36536932..36536937, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:2779140..2779150,-#_1c84cd40cafbf351af24044fa46391e3 | p9@CPXM1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:2779199..2779205,-#_1c84cd40cafbf351af24044fa46391e3 | p13@CPXM1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr16:11118533..11118538,+#_1c84cd40cafbf351af24044fa46391e3 | p12@CLEC16A |
| 2.39e-66 | FFCP PHASE1:Hg19::chrX:48056224..48056233,-#_1c84cd40cafbf351af24044fa46391e3 | p1@SSX5 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:101690855..101690861,-#_1c84cd40cafbf351af24044fa46391e3 | p14@DNMBP |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:2779199..2779205,-#_1c84cd40cafbf351af24044fa46391e3 | p13@CPXM1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chrX:48056224..48056233,-#_1c84cd40cafbf351af24044fa46391e3 | p1@SSX5 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:2779236..2779242,-#_1c84cd40cafbf351af24044fa46391e3 | p12@CPXM1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:63511856..63511858,-#_1c84cd40cafbf351af24044fa46391e3 | p@chr17:63511856..63511858, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:13574618..13574636,-#_1c84cd40cafbf351af24044fa46391e3 | p@chr17:13574618..13574636, - |
| 1.53e-44 | FFCP PHASE2:Hg19::chr2:191696381..191696384,-#_eb95a7183b9b5c689d0ab37f688fcf94 | p@chr2:191696381..191696384, - |
| 1.53e-44 | FFCP PHASE1:Hg19::chr2:191696381..191696384,-#_eb95a7183b9b5c689d0ab37f688fcf94 | p@chr2:191696381..191696384, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:106266838..106266843,+#_3dfcb511099955116f5fe587d3c6916f | p@chr11:106266838..106266843, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr9:140350189..140350212,-#_3dfcb511099955116f5fe587d3c6916f | p30@NELF |
| 4.27e-34 | FFCP PHASE2:Hg19::chr9:140350189..140350212,-#_3dfcb511099955116f5fe587d3c6916f | p30@NELF |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:101691199..101691208,-#_3dfcb511099955116f5fe587d3c6916f | p11@DNMBP |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:122157279..122157284,-#_3dfcb511099955116f5fe587d3c6916f | p@chr8:122157279..122157284, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:169956294..169956301,-#_3dfcb511099955116f5fe587d3c6916f | p@chr4:169956294..169956301, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:122157279..122157284,-#_3dfcb511099955116f5fe587d3c6916f | p@chr8:122157279..122157284, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:104005546..104005596,-#_3dfcb511099955116f5fe587d3c6916f | p@chr11:104005546..104005596, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:101691101..101691115,-#_3dfcb511099955116f5fe587d3c6916f | p7@DNMBP |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:169956294..169956301,-#_3dfcb511099955116f5fe587d3c6916f | p@chr4:169956294..169956301, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:41809203..41809208,-#_3dfcb511099955116f5fe587d3c6916f | p@chr11:41809203..41809208, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chrX:147062891..147062896,+#_3dfcb511099955116f5fe587d3c6916f | p3@FMR1NB |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:106266838..106266843,+#_3dfcb511099955116f5fe587d3c6916f | p@chr11:106266838..106266843, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_3dfcb511099955116f5fe587d3c6916f | p30@PDP1 |
| 4.27e-34 | FFCP PHASE2:Hg19::chrX:147062891..147062896,+#_3dfcb511099955116f5fe587d3c6916f | p3@FMR1NB |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_3dfcb511099955116f5fe587d3c6916f | p30@PDP1 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:104005546..104005596,-#_3dfcb511099955116f5fe587d3c6916f | p@chr11:104005546..104005596, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:101691101..101691115,-#_3dfcb511099955116f5fe587d3c6916f | p7@DNMBP |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:101691199..101691208,-#_3dfcb511099955116f5fe587d3c6916f | p11@DNMBP |
| 4.27e-34 | FFCP PHASE2:Hg19::chr9:103785643..103785646,-#_3dfcb511099955116f5fe587d3c6916f | p@chr9:103785643..103785646, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr9:103785643..103785646,-#_3dfcb511099955116f5fe587d3c6916f | p@chr9:103785643..103785646, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:41809203..41809208,-#_3dfcb511099955116f5fe587d3c6916f | p@chr11:41809203..41809208, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr9:140349915..140349924,-#_8037b57d31138aae04490ccc214ca0a4 | p34@NELF |
| 5.96e-34 | FFCP PHASE2:Hg19::chr1:93054640..93054674,-#_8037b57d31138aae04490ccc214ca0a4 | p@chr1:93054640..93054674, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_8037b57d31138aae04490ccc214ca0a4 | p@chr6:45405332..45405343, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr1:119837700..119837705,+#_8037b57d31138aae04490ccc214ca0a4 | p@chr1:119837700..119837705, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr17:63533845..63533851,-#_8037b57d31138aae04490ccc214ca0a4 | p@chr17:63533845..63533851, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr15:55806847..55806854,-#_8037b57d31138aae04490ccc214ca0a4 | p@chr15:55806847..55806854, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_8037b57d31138aae04490ccc214ca0a4 | p@chr6:45405393..45405412, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr1:93054640..93054674,-#_8037b57d31138aae04490ccc214ca0a4 | p@chr1:93054640..93054674, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr1:119837700..119837705,+#_8037b57d31138aae04490ccc214ca0a4 | p@chr1:119837700..119837705, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr2:118846114..118846125,+#_8037b57d31138aae04490ccc214ca0a4 | p6@INSIG2 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr12:65386452..65386492,-#_8037b57d31138aae04490ccc214ca0a4 | p@chr12:65386452..65386492, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_8037b57d31138aae04490ccc214ca0a4 | p@chr6:45405393..45405412, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_8037b57d31138aae04490ccc214ca0a4 | p@chr6:45399533..45399540, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr3:139035972..139036016,-#_8037b57d31138aae04490ccc214ca0a4 | p@chr3:139035972..139036016, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr3:139035972..139036016,-#_8037b57d31138aae04490ccc214ca0a4 | p@chr3:139035972..139036016, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_8037b57d31138aae04490ccc214ca0a4 | p@chr6:45399533..45399540, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr2:118846114..118846125,+#_8037b57d31138aae04490ccc214ca0a4 | p6@INSIG2 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_8037b57d31138aae04490ccc214ca0a4 | p@chr6:45399245..45399258, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr17:63533845..63533851,-#_8037b57d31138aae04490ccc214ca0a4 | p@chr17:63533845..63533851, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_8037b57d31138aae04490ccc214ca0a4 | p@chr6:45399245..45399258, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr20:2795718..2795731,+#_8037b57d31138aae04490ccc214ca0a4 | p5@C20orf141 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:46985426..46985427,-#_8037b57d31138aae04490ccc214ca0a4 | p@chr6:46985426..46985427, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr4:171012844..171012850,-#_8037b57d31138aae04490ccc214ca0a4 | p12@AADAT |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_8037b57d31138aae04490ccc214ca0a4 | p@chr6:45399263..45399274, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:169691363..169691375,-#_8037b57d31138aae04490ccc214ca0a4 | p@chr6:169691363..169691375, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr15:55806847..55806854,-#_8037b57d31138aae04490ccc214ca0a4 | p@chr15:55806847..55806854, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr20:2795718..2795731,+#_8037b57d31138aae04490ccc214ca0a4 | p5@C20orf141 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr9:140349856..140349859,-#_8037b57d31138aae04490ccc214ca0a4 | p36@NELF |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:46985426..46985427,-#_8037b57d31138aae04490ccc214ca0a4 | p@chr6:46985426..46985427, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr4:171012844..171012850,-#_8037b57d31138aae04490ccc214ca0a4 | p12@AADAT |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_8037b57d31138aae04490ccc214ca0a4 | p@chr6:45399263..45399274, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:169691363..169691375,-#_8037b57d31138aae04490ccc214ca0a4 | p@chr6:169691363..169691375, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr12:65386452..65386492,-#_8037b57d31138aae04490ccc214ca0a4 | p@chr12:65386452..65386492, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:141743015..141743025,+#_8037b57d31138aae04490ccc214ca0a4 | p@chr6:141743015..141743025, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr9:140349856..140349859,-#_8037b57d31138aae04490ccc214ca0a4 | p36@NELF |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_8037b57d31138aae04490ccc214ca0a4 | p@chr6:45399294..45399301, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:141743015..141743025,+#_8037b57d31138aae04490ccc214ca0a4 | p@chr6:141743015..141743025, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr9:140349915..140349924,-#_8037b57d31138aae04490ccc214ca0a4 | p34@NELF |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_8037b57d31138aae04490ccc214ca0a4 | p@chr6:45405332..45405343, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_8037b57d31138aae04490ccc214ca0a4 | p@chr6:45399294..45399301, + |
| 1.71e-30 | FFCP PHASE2:Hg19::chr2:75751179..75751194,+#_d502fa9cf975296ef954b4f404042c34 | p1@BC018659 |
| 1.71e-30 | FFCP PHASE1:Hg19::chr2:75751179..75751194,+#_d502fa9cf975296ef954b4f404042c34 | p1@BC018659 |
| 1.59e-27 | FFCP PHASE1:Hg19::chr14:29047235..29047244,+#_dcae9d220511a11da9c1ae295486703a | p@chr14:29047235..29047244, + |
| 1.59e-27 | FFCP PHASE2:Hg19::chr14:29047235..29047244,+#_dcae9d220511a11da9c1ae295486703a | p@chr14:29047235..29047244, + |
| 3.56e-27 | FFCP PHASE2:Hg19::chr17:171082..171101,+#_47c89581ec5267c8cbbe84952bf6540a | p@chr17:171082..171101, + |
| 3.56e-27 | FFCP PHASE1:Hg19::chr17:171082..171101,+#_47c89581ec5267c8cbbe84952bf6540a | p@chr17:171082..171101, + |
| 7.93e-25 | FFCP PHASE1:Hg19::chr7:27163592..27163605,-#_22d7886ec61ffbd7490e5ca67b1e704d | p@chr7:27163592..27163605, - |
| 7.93e-25 | FFCP PHASE2:Hg19::chr7:27163592..27163605,-#_22d7886ec61ffbd7490e5ca67b1e704d | p@chr7:27163592..27163605, - |
