UBERON:0009569: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=subdivision of trunk | |name=subdivision of trunk | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002100 | |part_of=UBERON:0002100 | ||
Latest revision as of 18:05, 12 September 2014
| Name: | subdivision of trunk | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Synonyms: |
"region of trunk" EXACT [FMA:25054] "trunk subdivision" EXACT [FMA:25054] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000475(organism subdivision) |
|---|---|
| part_of: | UBERON:0002100(trunk) |
Children
| is a: | UBERON:0000915 (thoracic segment of trunk),UBERON:0000916 (abdomen),UBERON:0001443 (chest),UBERON:0002417 (abdominal segment of trunk) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10015-101C6 (esophagus, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
... further results Mouse (Mus musculus)
- 10015-101C6 (esophagus, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009569 (subdivision of trunk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.18e-35 | FFCP PHASE1:Mm9::chr10:127188729..127188740,-#_fd42116cad14bd2693e5a57d0d7fd64b | p3@Gpr182 |
| 4.18e-35 | FFCP PHASE2:Mm9::chr10:127188729..127188740,-#_fd42116cad14bd2693e5a57d0d7fd64b | p3@Gpr182 |
| 4.44e-33 | FFCP PHASE1:Mm9::chr2:3031492..3031497,+#_0dd4031f20a1d53365e7ec0398d9f30a | p3@Fam171a1 |
| 4.44e-33 | FFCP PHASE2:Mm9::chr2:3031492..3031497,+#_0dd4031f20a1d53365e7ec0398d9f30a | p3@Fam171a1 |
| 1.33e-29 | FFCP PHASE1:Mm9::chr12:58298298..58298317,-#_f97933f2fc45ddd7d31ab8d45f6c7fba | p3@Slc25a21 |
| 1.33e-29 | FFCP PHASE2:Mm9::chr12:58298298..58298317,-#_f97933f2fc45ddd7d31ab8d45f6c7fba | p3@Slc25a21 |
| 2.52e-28 | FFCP PHASE2:Mm9::chr18:65185637..65185658,+#_aa2a18ade3ea56a864f95e33fc0400fe | p19@Nedd4l |
| 2.52e-28 | FFCP PHASE1:Mm9::chr18:65185637..65185658,+#_aa2a18ade3ea56a864f95e33fc0400fe | p19@Nedd4l |
| 3.81e-28 | FFCP PHASE1:Mm9::chr4:95246108..95246119,+#_115fcca785ee2cb3e460fcf7f37e2937 | p4@Fggy |
| 3.81e-28 | FFCP PHASE2:Mm9::chr4:95246108..95246119,+#_115fcca785ee2cb3e460fcf7f37e2937 | p4@Fggy |
| 6.52e-28 | FFCP PHASE1:Mm9::chr10:127188795..127188807,-#_cef3acb2451642f93f384a7284722eac | p2@Gpr182 |
| 6.52e-28 | FFCP PHASE2:Mm9::chr10:127188795..127188807,-#_cef3acb2451642f93f384a7284722eac | p2@Gpr182 |
| 5.79e-27 | FFCP PHASE1:Mm9::chr12:58298278..58298292,-#_5bb15e734f4cb14c1606d779ac1b0546 | p4@Slc25a21 |
| 5.79e-27 | FFCP PHASE2:Mm9::chr12:58298278..58298292,-#_5bb15e734f4cb14c1606d779ac1b0546 | p4@Slc25a21 |
| 2.13e-26 | FFCP PHASE2:Mm9::chr18:39026735..39026746,-#_eefd64f2b9a8b64cb2f100bc9f466749 | p8@Fgf1 |
| 2.13e-26 | FFCP PHASE1:Mm9::chr18:39026735..39026746,-#_eefd64f2b9a8b64cb2f100bc9f466749 | p8@Fgf1 |
| 2.89e-26 | FFCP PHASE2:Mm9::chr12:58298249..58298262,-#_1767bb8c57009a8f8db2df86f204f9be | p5@Slc25a21 |
| 2.89e-26 | FFCP PHASE1:Mm9::chr12:58298249..58298262,-#_1767bb8c57009a8f8db2df86f204f9be | p5@Slc25a21 |
| 7.94e-26 | FFCP PHASE2:Mm9::chr4:129255765..129255776,-#_2ddb47cf084d99c658de51f5e2974cf5 | p2@Fam167b |
| 7.94e-26 | FFCP PHASE1:Mm9::chr4:129255765..129255776,-#_2ddb47cf084d99c658de51f5e2974cf5 | p2@Fam167b |
| 1.59e-25 | FFCP PHASE1:Mm9::chr8:73247943..73247958,+#_6ff185055f6c298cbde102db0cb9ce2e | p3@Pde4c |
| 1.59e-25 | FFCP PHASE2:Mm9::chr8:73247943..73247958,+#_6ff185055f6c298cbde102db0cb9ce2e | p3@Pde4c |
| 1.72e-25 | FFCP PHASE2:Mm9::chr6:34129226..34129246,+#_32796f6013aaa1ac9d328bce456dd5f9 | p2@ENSMUST00000145644 |
| 1.72e-25 | FFCP PHASE1:Mm9::chr6:34129226..34129246,+#_32796f6013aaa1ac9d328bce456dd5f9 | p2@ENSMUST00000145644 |
| 1.97e-25 | FFCP PHASE2:Mm9::chr10:58904532..58904548,-#_9041169ad2ccb67abbfba29443fc2854 | p3@Oit3 |
| 1.97e-25 | FFCP PHASE1:Mm9::chr10:58904532..58904548,-#_9041169ad2ccb67abbfba29443fc2854 | p3@Oit3 |
| 4.73e-25 | FFCP PHASE1:Mm9::chr4:149377244..149377258,-#_381f6a448931dc71d331c397198d6bac | p3@H6pd |
| 4.73e-25 | FFCP PHASE2:Mm9::chr4:149377244..149377258,-#_381f6a448931dc71d331c397198d6bac | p3@H6pd |
| 5.2e-25 | FFCP PHASE2:Mm9::chr11:49423199..49423230,+#_dd63e04f743daef53a46b67f0c3ccd3a | p1@Flt4 |
| 5.2e-25 | FFCP PHASE1:Mm9::chr11:49423199..49423230,+#_dd63e04f743daef53a46b67f0c3ccd3a | p1@Flt4 |
| 8.93e-25 | FFCP PHASE2:Mm9::chr9:44611035..44611044,-#_861fe420c416d9bab6916b62c36d8115 | p4@Ttc36 |
| 8.93e-25 | FFCP PHASE1:Mm9::chr9:44611035..44611044,-#_861fe420c416d9bab6916b62c36d8115 | p4@Ttc36 |
| 1.04e-24 | FFCP PHASE2:Mm9::chr16:34807407..34807430,+#_f9153bf18a9056d383d833b7fba16e74 | p@chr16:34807407..34807430, + |
| 1.04e-24 | FFCP PHASE1:Mm9::chr16:34807407..34807430,+#_f9153bf18a9056d383d833b7fba16e74 | p@chr16:34807407..34807430, + |
| 1.42e-24 | FFCP PHASE2:Hg19::chr17:202579..202625,-#_1d91652e10d345d4df44bdfe4a0a844f | p1@RPH3AL |
| 1.42e-24 | FFCP PHASE1:Hg19::chr17:202579..202625,-#_1d91652e10d345d4df44bdfe4a0a844f | p1@RPH3AL |
| 1.58e-24 | FFCP PHASE2:Mm9::chr10:124765412..124765425,-#_8d35886ad26deea6d1463a147a4ed2d1 | p5@Slc16a7 |
| 1.58e-24 | FFCP PHASE1:Mm9::chr10:124765412..124765425,-#_8d35886ad26deea6d1463a147a4ed2d1 | p5@Slc16a7 |
| 2.5e-24 | FFCP PHASE2:Mm9::chr11:60622345..60622377,-#_d631a650668264c39f362445c6431b57 | p@chr11:60622345..60622377, - |
| 2.5e-24 | FFCP PHASE1:Mm9::chr11:60622345..60622377,-#_d631a650668264c39f362445c6431b57 | p@chr11:60622345..60622377, - |
| 2.92e-24 | FFCP PHASE1:Mm9::chr16:34807285..34807303,+#_2df05609a8d0eae250249da71946fcdd | p@chr16:34807285..34807303, + |
| 2.92e-24 | FFCP PHASE2:Mm9::chr16:34807285..34807303,+#_2df05609a8d0eae250249da71946fcdd | p@chr16:34807285..34807303, + |
| 3.01e-24 | FFCP PHASE1:Mm9::chr10:127188763..127188793,-#_73763677c5a29790bdc3f2c8a49f424a | p1@Gpr182 |
| 3.01e-24 | FFCP PHASE2:Mm9::chr10:127188763..127188793,-#_73763677c5a29790bdc3f2c8a49f424a | p1@Gpr182 |
| 3.43e-24 | FFCP PHASE1:Mm9::chr11:7097807..7097814,+#_5e6202265b4130249fd99d356060ffa4 | p2@Igfbp1 |
| 3.43e-24 | FFCP PHASE2:Mm9::chr11:7097807..7097814,+#_5e6202265b4130249fd99d356060ffa4 | p2@Igfbp1 |
| 6.15e-24 | FFCP PHASE2:Mm9::chr16:37621995..37622022,-#_c67f628ba1f0cd5875ae720d8c2c243d | p@chr16:37621995..37622022, - |
| 6.15e-24 | FFCP PHASE1:Mm9::chr16:37621995..37622022,-#_c67f628ba1f0cd5875ae720d8c2c243d | p@chr16:37621995..37622022, - |
| 6.24e-24 | FFCP PHASE1:Mm9::chr13:23931270..23931311,+#_bf05d0e302f0ff12e61a13ea246e57e8 | p2@Slc17a3 |
| 6.24e-24 | FFCP PHASE2:Mm9::chr13:23931270..23931311,+#_bf05d0e302f0ff12e61a13ea246e57e8 | p2@Slc17a3 |
| 9.84e-24 | FFCP PHASE1:Mm9::chr19:12707997..12708015,+#_670b0aeca6c38dbfa019d189337513ca | p1@Glyat |
| 9.84e-24 | FFCP PHASE2:Mm9::chr19:12707997..12708015,+#_670b0aeca6c38dbfa019d189337513ca | p1@Glyat |
| 1.16e-23 | FFCP PHASE2:Mm9::chr13:23931467..23931489,+#_3560f5d1baf3de8638fef5a742236012 | p3@Slc17a3 |
| 1.16e-23 | FFCP PHASE1:Mm9::chr13:23931467..23931489,+#_3560f5d1baf3de8638fef5a742236012 | p3@Slc17a3 |
| 1.18e-23 | FFCP PHASE2:Mm9::chr3:94737023..94737030,+#_fcbb3888e683d5095617a68aee88a0f8 | p2@Selenbp1 |
| 1.18e-23 | FFCP PHASE1:Mm9::chr3:94737023..94737030,+#_fcbb3888e683d5095617a68aee88a0f8 | p2@Selenbp1 |
| 1.32e-23 | FFCP PHASE2:Mm9::chr2:26436544..26436559,+#_f62cfb54a8b639d003f5a99209c76b98 | p4@Egfl7 |
| 1.32e-23 | FFCP PHASE1:Mm9::chr2:26436544..26436559,+#_f62cfb54a8b639d003f5a99209c76b98 | p4@Egfl7 |
| 1.73e-23 | FFCP PHASE1:Mm9::chr4:96330769..96330789,-#_d91a9cdbbd6f13704f3bc80951a342d7 | p2@Cyp2j5 |
| 1.73e-23 | FFCP PHASE2:Mm9::chr4:96330769..96330789,-#_d91a9cdbbd6f13704f3bc80951a342d7 | p2@Cyp2j5 |
| 2.58e-23 | FFCP PHASE2:Mm9::chr16:37580223..37580237,+#_6676b99228e0f79a54b2d433b2bba1e7 | p4@Hgd |
| 2.58e-23 | FFCP PHASE1:Mm9::chr16:37580223..37580237,+#_6676b99228e0f79a54b2d433b2bba1e7 | p4@Hgd |
| 2.66e-23 | FFCP PHASE2:Mm9::chrX:147001144..147001172,+#_d3fca5c34b122beb9f989e4a581ea499 | p2@Alas2 |
| 2.66e-23 | FFCP PHASE1:Mm9::chrX:147001144..147001172,+#_d3fca5c34b122beb9f989e4a581ea499 | p2@Alas2 |
| 2.93e-23 | FFCP PHASE2:Mm9::chr1:141398256..141398267,+#_b89cff788fc6116b95b957207220ee85 | p3@F13b |
| 2.93e-23 | FFCP PHASE1:Mm9::chr1:141398256..141398267,+#_b89cff788fc6116b95b957207220ee85 | p3@F13b |
| 3.74e-23 | FFCP PHASE2:Mm9::chr15:82624876..82624892,-#_4776edd06afece646a578e8d2dfdbf3a | p5@Cyp2d26 |
| 3.74e-23 | FFCP PHASE1:Mm9::chr15:82624876..82624892,-#_4776edd06afece646a578e8d2dfdbf3a | p5@Cyp2d26 |
| 3.84e-23 | FFCP PHASE2:Mm9::chr10:95305558..95305580,-#_20529ab384a6b1979d6cc7243a65e064 | p@chr10:95305558..95305580, - |
| 3.84e-23 | FFCP PHASE1:Mm9::chr10:95305558..95305580,-#_20529ab384a6b1979d6cc7243a65e064 | p@chr10:95305558..95305580, - |
| 4.26e-23 | FFCP PHASE1:Mm9::chr18:44761374..44761391,-#_a78f860835281914dbfb89e1eb964f52 | p@chr18:44761374..44761391, - |
| 4.26e-23 | FFCP PHASE2:Mm9::chr18:44761374..44761391,-#_a78f860835281914dbfb89e1eb964f52 | p@chr18:44761374..44761391, - |
| 4.77e-23 | FFCP PHASE1:Mm9::chr9:44609886..44609901,-#_0a24157b82538bcdbc34c7107d2bf909 | p@chr9:44609886..44609901, - |
| 4.77e-23 | FFCP PHASE2:Mm9::chr9:44609886..44609901,-#_0a24157b82538bcdbc34c7107d2bf909 | p@chr9:44609886..44609901, - |
| 5.73e-23 | FFCP PHASE2:Mm9::chr4:95246137..95246153,+#_e2b968e3adbc4cc016385598ad72bff1 | p3@Fggy |
| 5.73e-23 | FFCP PHASE1:Mm9::chr4:95246137..95246153,+#_e2b968e3adbc4cc016385598ad72bff1 | p3@Fggy |
| 6.37e-23 | FFCP PHASE1:Mm9::chr4:140176541..140176565,-#_6429ce7c6ab7ff1840a8ab9423e5321d | p@chr4:140176541..140176565, - |
| 6.37e-23 | FFCP PHASE2:Mm9::chr4:140176541..140176565,-#_6429ce7c6ab7ff1840a8ab9423e5321d | p@chr4:140176541..140176565, - |
| 6.44e-23 | FFCP PHASE1:Mm9::chr4:150283537..150283568,-#_17a1b01dcf547133aacbce6fd26c6a8a | p5@Park7 |
| 6.44e-23 | FFCP PHASE2:Mm9::chr4:150283537..150283568,-#_17a1b01dcf547133aacbce6fd26c6a8a | p5@Park7 |
| 7.0e-23 | FFCP PHASE1:Mm9::chr9:44609861..44609874,-#_3f29623ddfb496a80e9efa6163400615 | p@chr9:44609861..44609874, - |
| 7.0e-23 | FFCP PHASE2:Mm9::chr9:44609861..44609874,-#_3f29623ddfb496a80e9efa6163400615 | p@chr9:44609861..44609874, - |
| 7.2e-23 | FFCP PHASE2:Mm9::chr15:99733367..99733388,+#_6713d55e887a8a5072425c23a02d094a | p@chr15:99733367..99733388, + |
| 7.2e-23 | FFCP PHASE1:Mm9::chr15:99733367..99733388,+#_6713d55e887a8a5072425c23a02d094a | p@chr15:99733367..99733388, + |
| 1.49e-22 | FFCP PHASE1:Mm9::chr14:118994097..118994118,-#_bc55132a569df09d09df2eca8842cc9d | p@chr14:118994097..118994118, - |
| 1.49e-22 | FFCP PHASE2:Mm9::chr14:118994097..118994118,-#_bc55132a569df09d09df2eca8842cc9d | p@chr14:118994097..118994118, - |
| 1.77e-22 | FFCP PHASE1:Mm9::chr13:58224772..58224789,-#_016e3cb29d12ed5b6b3e103a9804a86b | p@chr13:58224772..58224789, - |
| 1.77e-22 | FFCP PHASE2:Mm9::chr13:58224772..58224789,-#_016e3cb29d12ed5b6b3e103a9804a86b | p@chr13:58224772..58224789, - |
| 2.06e-22 | FFCP PHASE1:Mm9::chr6:3938967..3938987,-#_7da0ca4f1fb227abbeb79b976247eb0b | p@chr6:3938967..3938987, - |
| 2.06e-22 | FFCP PHASE2:Mm9::chr6:3938967..3938987,-#_7da0ca4f1fb227abbeb79b976247eb0b | p@chr6:3938967..3938987, - |
| 2.13e-22 | FFCP PHASE1:Mm9::chr16:37580298..37580310,+#_befdab4788717a43a31938dd40d9e3d6 | p3@Hgd |
| 2.13e-22 | FFCP PHASE2:Mm9::chr16:37580298..37580310,+#_befdab4788717a43a31938dd40d9e3d6 | p3@Hgd |
| 2.16e-22 | FFCP PHASE2:Mm9::chrX:72625134..72625162,-#_445c8ea8148989c862954d5bc1efad4d | p1@F8 |
| 2.16e-22 | FFCP PHASE1:Mm9::chrX:72625134..72625162,-#_445c8ea8148989c862954d5bc1efad4d | p1@F8 |
| 2.7e-22 | FFCP PHASE2:Hg19::chr10:99344428..99344441,+#_9fa31316baaeb3ea179769b8d1fdf1be | p5@PI4K2A |
| 2.7e-22 | FFCP PHASE1:Hg19::chr10:99344428..99344441,+#_9fa31316baaeb3ea179769b8d1fdf1be | p5@PI4K2A |
| 2.9e-22 | FFCP PHASE1:Mm9::chr15:9265320..9265378,+#_2265c8aeabd3b48f68acf9e80088bf95 | p1@Ugt3a2 |
| 2.9e-22 | FFCP PHASE2:Mm9::chr15:9265320..9265378,+#_2265c8aeabd3b48f68acf9e80088bf95 | p1@Ugt3a2 |
| 3.51e-22 | FFCP PHASE2:Mm9::chr16:33057098..33057124,+#_16114a8c950619f073f80730a95429c8 | p3@Gm11810, p3@Gm14279, p3@LOC100505045, p3@LOC100505110, p3@Rpl35a-ps7, p4@Rpl35a |
| 3.51e-22 | FFCP PHASE1:Mm9::chr16:33057098..33057124,+#_16114a8c950619f073f80730a95429c8 | p3@Gm11810, p3@Gm14279, p3@LOC100505045, p3@LOC100505110, p3@Rpl35a-ps7, p4@Rpl35a |
