UBERON:0010129: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 12: | Line 12: | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=femur cartilage | |name=femur cartilage element | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0005254 | |part_of=UBERON:0005254 | ||
Latest revision as of 18:08, 12 September 2014
| Name: | femur cartilage element | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Synonyms: | "femoral cartilage condensation" EXACT [EMAPA:17742] | ||
| Comments: | TODO - request EHDAA2 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005254(upper leg mesenchyme),UBERON:0010881(limb cartilage element),UBERON:0010885(hindlimb cartilage element),UBERON:0015052(femur endochondral element) |
|---|---|
| develops_from: | UBERON:0006234(femur pre-cartilage condensation) |
| part_of: | UBERON:0005254(upper leg mesenchyme) |
Children
| develops from: | UBERON:0000981 (femur) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010129 (femur cartilage element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_b20b405168ece2cd79718456e1f1f5a4 | p26@Myo18a |
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_b20b405168ece2cd79718456e1f1f5a4 | p26@Myo18a |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_59ac7abefcbc9cdfc2bacc11ea105640 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_59ac7abefcbc9cdfc2bacc11ea105640 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_59ac7abefcbc9cdfc2bacc11ea105640 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_59ac7abefcbc9cdfc2bacc11ea105640 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_59ac7abefcbc9cdfc2bacc11ea105640 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_59ac7abefcbc9cdfc2bacc11ea105640 | p@chr2:32482372..32482381, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_3d2e6bedb65d10a204650b75fa8a27cd | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_3d2e6bedb65d10a204650b75fa8a27cd | p@chr6:51525810..51525817, + |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_e06ecf75a560a212d60d92b6c8bfd8ea | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_e06ecf75a560a212d60d92b6c8bfd8ea | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_84c1823863fc55cf465339a66c2ce793 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_84c1823863fc55cf465339a66c2ce793 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_84c1823863fc55cf465339a66c2ce793 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_84c1823863fc55cf465339a66c2ce793 | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_84c1823863fc55cf465339a66c2ce793 | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_84c1823863fc55cf465339a66c2ce793 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_84c1823863fc55cf465339a66c2ce793 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_84c1823863fc55cf465339a66c2ce793 | p@chr11:67063327..67063335, + |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_a6cfcd8fb6bbcfd13c022240934854b0 | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_a6cfcd8fb6bbcfd13c022240934854b0 | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_2fca34e3a820d90e74f568f4099b34e8 | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_2fca34e3a820d90e74f568f4099b34e8 | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_3043f496c837e04523e15c64ffdc6e79 | p3@Asb16 |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_3043f496c837e04523e15c64ffdc6e79 | p3@Asb16 |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_68ec97c8bb8b1eecf925b5da4dc77665 | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_68ec97c8bb8b1eecf925b5da4dc77665 | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_0bb72e26fd71c7b76cb3870c9eaa6442 | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_0bb72e26fd71c7b76cb3870c9eaa6442 | p5@Pla2g5 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_92223184e9c0a32b4138ee4408862ce2 | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_92223184e9c0a32b4138ee4408862ce2 | p2@uc009mdq.1 |
| 1.23e-33 | FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_632a752c374399bd3430b63c698943a4 | p3@Mmp9 |
| 1.23e-33 | FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_632a752c374399bd3430b63c698943a4 | p3@Mmp9 |
| 1.58e-33 | FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_836292b076e055f36fb8c94acb4b081d | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_836292b076e055f36fb8c94acb4b081d | p2@Oscar |
| 1.58e-33 | FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_836292b076e055f36fb8c94acb4b081d | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_836292b076e055f36fb8c94acb4b081d | p@chr1:166815111..166815121, - |
| 2.04e-33 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_3bfbfad8bd095b147bb41b6258f5ab70 | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_3bfbfad8bd095b147bb41b6258f5ab70 | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_3bfbfad8bd095b147bb41b6258f5ab70 | p4@Lipc |
| 2.04e-33 | FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_3bfbfad8bd095b147bb41b6258f5ab70 | p4@Lipc |
| 3.38e-33 | FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_8a25e17d9e343cc652d7d3ddf5525152 | p6@Sp7 |
| 3.38e-33 | FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_8a25e17d9e343cc652d7d3ddf5525152 | p6@Sp7 |
| 7.17e-33 | FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_14c82d0aa1565600183f1c7342c207b0 | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_14c82d0aa1565600183f1c7342c207b0 | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_14c82d0aa1565600183f1c7342c207b0 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_14c82d0aa1565600183f1c7342c207b0 | p@chr8:126415826..126415839, + |
| 2.67e-30 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_88a5deb9d5f31035a592d874185a8ef7 | p@chr2:32482387..32482399, + |
| 2.67e-30 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_88a5deb9d5f31035a592d874185a8ef7 | p@chr2:32482387..32482399, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_f968a26e969eb44c23f9cc8eba792936 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_f968a26e969eb44c23f9cc8eba792936 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_f968a26e969eb44c23f9cc8eba792936 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_f968a26e969eb44c23f9cc8eba792936 | p@chr15:58649683..58649688, - |
| 1.46e-29 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_7a27804997cf25f62956badaa261c41c | p@chr7:133590998..133591009, - |
| 1.46e-29 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_7a27804997cf25f62956badaa261c41c | p@chr7:133590998..133591009, - |
| 1.73e-29 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_9aca7882c13586013b773a269e298ac0 | p2@Myoz3 |
| 1.73e-29 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_9aca7882c13586013b773a269e298ac0 | p2@Myoz3 |
| 2.42e-29 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_230c82e38099de5332b1e947fd26796b | p2@Myh4 |
| 2.42e-29 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_230c82e38099de5332b1e947fd26796b | p2@Myh4 |
| 7.46e-29 | FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_3c3e4b2f9ab1d74a99073373073cd43f | p@chr1:57155729..57155740, - |
| 7.46e-29 | FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_3c3e4b2f9ab1d74a99073373073cd43f | p@chr1:57155729..57155740, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_cfed055919e96fcc5bd7bf3bd88095f4 | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_cfed055919e96fcc5bd7bf3bd88095f4 | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_cfed055919e96fcc5bd7bf3bd88095f4 | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_cfed055919e96fcc5bd7bf3bd88095f4 | p1@Msmp |
| 1.15e-28 | FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_88a5c3a4fa41a084bc96f7f985be4972 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_88a5c3a4fa41a084bc96f7f985be4972 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_88a5c3a4fa41a084bc96f7f985be4972 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_88a5c3a4fa41a084bc96f7f985be4972 | p@chrY:2858251..2858257, + |
| 1.43e-28 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_14f8f44bfb680c5e7f21fdbe73e076af | p@chr6:34436258..34436292, + |
| 1.43e-28 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_14f8f44bfb680c5e7f21fdbe73e076af | p@chr6:34436258..34436292, + |
| 2.2e-28 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_a87d2922f2d8b921257bfcfced178479 | p@chr11:67069796..67069817, - |
| 2.2e-28 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_a87d2922f2d8b921257bfcfced178479 | p@chr11:67069796..67069817, - |
| 2.72e-28 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_92f35e9e1edb5e21364d19e2d1f1f77e | p@chr8:107702369..107702386, + |
| 2.72e-28 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_92f35e9e1edb5e21364d19e2d1f1f77e | p@chr8:107702369..107702386, + |
| 3.45e-28 | FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_65654c038838e0bdc1429b6964cca2c6 | p1@Siglec15 |
| 3.45e-28 | FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_65654c038838e0bdc1429b6964cca2c6 | p1@Siglec15 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_c9b67a7ef6d525462cc93280db984d84 | p6@Atp2a1 |
| 6.5e-28 | FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_c9b67a7ef6d525462cc93280db984d84 | p6@Atp2a1 |
| 8.9e-28 | FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_61f33937532c793eb965f9fcb99fc87f | p7@Atp2a1 |
| 8.9e-28 | FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_61f33937532c793eb965f9fcb99fc87f | p7@Atp2a1 |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_76c0a43e57ee0efb532af90c91e9117d | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_76c0a43e57ee0efb532af90c91e9117d | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_76c0a43e57ee0efb532af90c91e9117d | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_76c0a43e57ee0efb532af90c91e9117d | p@chr7:133592162..133592188, - |
| 6.75e-27 | FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_7780032e32df3e53fd970433939307f9 | p4@Sgca |
| 6.75e-27 | FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_7780032e32df3e53fd970433939307f9 | p4@Sgca |
| 1.66e-26 | FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_96db3c89d267fdcc49cb794fdb4345b6 | p1@Mepe |
| 1.66e-26 | FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_96db3c89d267fdcc49cb794fdb4345b6 | p1@Mepe |
| 3.47e-26 | FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_b8e3f6874788dbfabf4a5f3c92e2e596 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_b8e3f6874788dbfabf4a5f3c92e2e596 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_b8e3f6874788dbfabf4a5f3c92e2e596 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_b8e3f6874788dbfabf4a5f3c92e2e596 | p@chr12:81581216..81581231, + |
| 1.12e-25 | FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_d727d461e3bfaf7bdaf9d4cfb3b2988d | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_d727d461e3bfaf7bdaf9d4cfb3b2988d | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_d727d461e3bfaf7bdaf9d4cfb3b2988d | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_d727d461e3bfaf7bdaf9d4cfb3b2988d | p5@Col11a2 |
| 1.36e-25 | FFCP PHASE2:Mm9::chr2:180890942..180890956,-#_f947f48607e22f8f4d5010b8a7d52fda | p@chr2:180890942..180890956, - |
| 1.36e-25 | FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_f947f48607e22f8f4d5010b8a7d52fda | p@chr2:180890942..180890956, - |
