FFCP PHASE2:Mm9::chr17:27693525..27693538,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP |DHSsupport=NA |DPIdataset=NA |EntrezGene=entrezgene:15361 |HGNC= |MCL_coexpression_id=13 |TSSclassifier=NA |UniProt=uniprot:P17095,uniprot:Q566K0,uniprot:Q3TVP0,unipro...") |
No edit summary |
||
Line 2: | Line 2: | ||
|DHSsupport=NA | |DHSsupport=NA | ||
|DPIdataset=NA | |DPIdataset=NA | ||
|EntrezGene= | |EntrezGene=15361 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=13 | |MCL_coexpression_id=13 | ||
|TSSclassifier=NA | |TSSclassifier=NA | ||
|UniProt= | |UniProt=P17095,Q566K0,Q3TVP0,Q3TE85 | ||
|association_with_transcript=6bp_to_NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,uc008boy.2,uc008boz.2,uc008bpb.2,uc008bpd.2,uc012anw.1,uc012anx.1,uc012any.1,uc012anz.1,uc012aoa.1,uc012aob.1,uc012aoc.1,uc012aod.1_5end | |association_with_transcript=6bp_to_NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,uc008boy.2,uc008boz.2,uc008bpb.2,uc008bpd.2,uc012anw.1,uc012anx.1,uc012any.1,uc012anz.1,uc012aoa.1,uc012aob.1,uc012aoc.1,uc012aod.1_5end | ||
|cluster_id=chr17:27693525..27693538,+ | |cluster_id=chr17:27693525..27693538,+ |
Latest revision as of 03:38, 26 September 2015
Short description: | p5@Hmga1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Hmga1_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 6bp_to_NM_001025427, NM_001039356, NM_001166535, NM_001166536, NM_001166539, NM_001166540, NM_001166541, NM_001166542, NM_001166543, NM_001166544, NM_001166545, NM_001166546, uc008boy.2, uc008boz.2, uc008bpb.2, uc008bpd.2, uc012anw.1, uc012anx.1, uc012any.1, uc012anz.1, uc012aoa.1, uc012aob.1, uc012aoc.1, uc012aod.1_5end |
EntrezGene: | Hmga1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.07e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.07e-14 | 23 |
neuron | 8.30e-08 | 33 |
neuronal stem cell | 8.30e-08 | 33 |
neuroblast | 8.30e-08 | 33 |
electrically signaling cell | 8.30e-08 | 33 |
neural cell | 1.96e-07 | 43 |
ectodermal cell | 3.05e-07 | 44 |
neurectodermal cell | 3.05e-07 | 44 |
electrically responsive cell | 3.37e-07 | 39 |
electrically active cell | 3.37e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 8.86e-19 | 54 |
ectoderm-derived structure | 3.95e-18 | 95 |
ectoderm | 3.95e-18 | 95 |
presumptive ectoderm | 3.95e-18 | 95 |
neural tube | 1.29e-17 | 52 |
neural rod | 1.29e-17 | 52 |
future spinal cord | 1.29e-17 | 52 |
neural keel | 1.29e-17 | 52 |
central nervous system | 2.10e-17 | 73 |
nervous system | 4.72e-17 | 75 |
neurectoderm | 5.73e-16 | 64 |
neural plate | 5.73e-16 | 64 |
presumptive neural plate | 5.73e-16 | 64 |
gray matter | 1.52e-15 | 34 |
ecto-epithelium | 1.64e-15 | 73 |
brain | 1.66e-14 | 47 |
future brain | 1.66e-14 | 47 |
regional part of brain | 5.58e-14 | 46 |
brain grey matter | 1.47e-12 | 29 |
regional part of telencephalon | 1.47e-12 | 29 |
telencephalon | 1.47e-12 | 29 |
anterior neural tube | 2.40e-12 | 40 |
structure with developmental contribution from neural crest | 2.40e-12 | 92 |
pre-chordal neural plate | 3.88e-12 | 49 |
regional part of forebrain | 1.05e-11 | 39 |
forebrain | 1.05e-11 | 39 |
future forebrain | 1.05e-11 | 39 |
cerebral cortex | 7.64e-08 | 21 |
cerebral hemisphere | 7.64e-08 | 21 |
pallium | 7.64e-08 | 21 |