UBERON:0000162: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0000162
|name=cloaca
|namespace=
|def="Posterior opening that serves as the only such opening for the intestinal and urinary tracts of certain animal s...") |
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{{UBERON | {{UBERON | ||
|alt_id= | |alt_id= | ||
| | |comment=Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs[WP]. We deliberately exclude the wbbt class here, but may in future have a grouping class | ||
|created_by= | |created_by= | ||
| | |def="Posterior opening that serves as the only such opening for the intestinal and urinary tracts of certain animal species" [Wikipedia:Cloaca] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000162 | |||
|is_a=UBERON:0000481 ;;UBERON:0004120 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=cloaca | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001555;;UBERON:0004122 | |part_of=UBERON:0001555;;UBERON:0004122 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure which is the common receptacle for the alimentary canal, Wolffian ducts, oviducts, and the bladder.[AAO]" xsd:string | |||
|subset= | |||
|synonym="cloacal chamber" RELATED [];;"vent" RELATED [] | |||
|union_of= | |||
|xref=AAO:0000095;;GAID:1206;;MESH:A.13.223;;ncithesaurus:Cloaca;;SCTID:362857006;;TAO:0000330;;VHOG:0001186;;XAO:0000244;;ZFA:0000330 | |||
}} | }} | ||
Latest revision as of 17:07, 12 September 2014
| Name: | cloaca | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Posterior opening that serves as the only such opening for the intestinal and urinary tracts of certain animal species" [Wikipedia:Cloaca] | ||
| Xrefs: |
| ||
| Synonyms: |
"cloacal chamber" RELATED [] "vent" RELATED [] | ||
| Comments: | Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs[WP]. We deliberately exclude the wbbt class here, but may in future have a grouping class |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000481(multi-tissue structure),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| part_of: | UBERON:0001555(digestive tract),UBERON:0004122(genitourinary system) |
Children
| is a: | UBERON:0000163 (embryonic cloaca) |
|---|---|
| part of: | UBERON:0012481 (cloacal epithelium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000162 (cloaca), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.58e-44 | FFCP PHASE1:Mm9::chr1:132699659..132699668,+#_10f68facfbb7399895e5c2ac3d49a695 | p@chr1:132699659..132699668, + |
| 4.58e-44 | FFCP PHASE2:Mm9::chr1:132699659..132699668,+#_10f68facfbb7399895e5c2ac3d49a695 | p@chr1:132699659..132699668, + |
| 1.7e-39 | FFCP PHASE1:Mm9::chr9:96425825..96425834,-#_33633447503fc13438e784bddfd0b0b9 | p@chr9:96425825..96425834, - |
| 1.7e-39 | FFCP PHASE1:Mm9::chr7:114836650..114836663,+#_33633447503fc13438e784bddfd0b0b9 | p@chr7:114836650..114836663, + |
| 1.7e-39 | FFCP PHASE2:Mm9::chr9:96425825..96425834,-#_33633447503fc13438e784bddfd0b0b9 | p@chr9:96425825..96425834, - |
| 1.7e-39 | FFCP PHASE1:Mm9::chr9:96425983..96425992,+#_33633447503fc13438e784bddfd0b0b9 | p@chr9:96425983..96425992, + |
| 1.7e-39 | FFCP PHASE2:Mm9::chr9:96425983..96425992,+#_33633447503fc13438e784bddfd0b0b9 | p@chr9:96425983..96425992, + |
| 1.7e-39 | FFCP PHASE2:Mm9::chr15:58237385..58237400,+#_33633447503fc13438e784bddfd0b0b9 | p@chr15:58237385..58237400, + |
| 1.7e-39 | FFCP PHASE1:Mm9::chr15:58237385..58237400,+#_33633447503fc13438e784bddfd0b0b9 | p@chr15:58237385..58237400, + |
| 1.7e-39 | FFCP PHASE2:Mm9::chr7:114836650..114836663,+#_33633447503fc13438e784bddfd0b0b9 | p@chr7:114836650..114836663, + |
| 2.66e-39 | FFCP PHASE2:Mm9::chr6:124520322..124520333,+#_2107f23b16fe2911712a493b9b1a6304 | p3@C1rb |
| 2.66e-39 | FFCP PHASE2:Mm9::chr6:124520368..124520379,+#_2107f23b16fe2911712a493b9b1a6304 | p4@C1rb |
| 2.66e-39 | FFCP PHASE2:Mm9::chr7:28922549..28922561,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr7:28922549..28922561, + |
| 2.66e-39 | FFCP PHASE1:Mm9::chr9:120464717..120464741,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr9:120464717..120464741, + |
| 2.66e-39 | FFCP PHASE2:Mm9::chr9:120464717..120464741,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr9:120464717..120464741, + |
| 2.66e-39 | FFCP PHASE2:Mm9::chr7:28914450..28914477,+#_2107f23b16fe2911712a493b9b1a6304 | p2@9530053A07Rik |
| 2.66e-39 | FFCP PHASE2:Mm9::chr6:42547567..42547580,-#_2107f23b16fe2911712a493b9b1a6304 | p4@Fam115e |
| 2.66e-39 | FFCP PHASE2:Mm9::chr7:28924794..28924814,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr7:28924794..28924814, + |
| 2.66e-39 | FFCP PHASE1:Mm9::chr9:120464756..120464765,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr9:120464756..120464765, + |
| 2.66e-39 | FFCP PHASE1:Mm9::chr6:124520322..124520333,+#_2107f23b16fe2911712a493b9b1a6304 | p3@C1rb |
| 2.66e-39 | FFCP PHASE2:Mm9::chr9:120464756..120464765,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr9:120464756..120464765, + |
| 2.66e-39 | FFCP PHASE2:Mm9::chr5:120136866..120136874,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr5:120136866..120136874, + |
| 2.66e-39 | FFCP PHASE1:Mm9::chr9:36337031..36337049,-#_2107f23b16fe2911712a493b9b1a6304 | p@chr9:36337031..36337049, - |
| 2.66e-39 | FFCP PHASE1:Mm9::chr7:28914450..28914477,+#_2107f23b16fe2911712a493b9b1a6304 | p2@9530053A07Rik |
| 2.66e-39 | FFCP PHASE2:Mm9::chr7:28914478..28914498,+#_2107f23b16fe2911712a493b9b1a6304 | p3@9530053A07Rik |
| 2.66e-39 | FFCP PHASE2:Mm9::chr7:28900349..28900364,-#_2107f23b16fe2911712a493b9b1a6304 | p@chr7:28900349..28900364, - |
| 2.66e-39 | FFCP PHASE1:Mm9::chr6:42547567..42547580,-#_2107f23b16fe2911712a493b9b1a6304 | p4@Fam115e |
| 2.66e-39 | FFCP PHASE1:Mm9::chr5:120136866..120136874,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr5:120136866..120136874, + |
| 2.66e-39 | FFCP PHASE1:Mm9::chr7:28922549..28922561,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr7:28922549..28922561, + |
| 2.66e-39 | FFCP PHASE2:Mm9::chr19:11353922..11353934,-#_2107f23b16fe2911712a493b9b1a6304 | p@chr19:11353922..11353934, - |
| 2.66e-39 | FFCP PHASE1:Mm9::chr7:28914478..28914498,+#_2107f23b16fe2911712a493b9b1a6304 | p3@9530053A07Rik |
| 2.66e-39 | FFCP PHASE1:Mm9::chr7:55028037..55028075,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr7:55028037..55028075, + |
| 2.66e-39 | FFCP PHASE1:Mm9::chr7:28900349..28900364,-#_2107f23b16fe2911712a493b9b1a6304 | p@chr7:28900349..28900364, - |
| 2.66e-39 | FFCP PHASE1:Mm9::chr7:28924794..28924814,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr7:28924794..28924814, + |
| 2.66e-39 | FFCP PHASE2:Mm9::chr7:55028037..55028075,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr7:55028037..55028075, + |
| 2.66e-39 | FFCP PHASE1:Mm9::chr6:124520368..124520379,+#_2107f23b16fe2911712a493b9b1a6304 | p4@C1rb |
| 2.66e-39 | FFCP PHASE2:Mm9::chr9:36337031..36337049,-#_2107f23b16fe2911712a493b9b1a6304 | p@chr9:36337031..36337049, - |
| 2.66e-39 | FFCP PHASE1:Mm9::chr19:11353922..11353934,-#_2107f23b16fe2911712a493b9b1a6304 | p@chr19:11353922..11353934, - |
| 2.02e-32 | FFCP PHASE2:Hg19::chr10:91567053..91567066,+#_43f6be8aecdc427b7459cacf9106d116 | p@chr10:91567053..91567066, + |
| 2.02e-32 | FFCP PHASE1:Hg19::chr10:91567053..91567066,+#_43f6be8aecdc427b7459cacf9106d116 | p@chr10:91567053..91567066, + |
| 2.02e-32 | FFCP PHASE2:Hg19::chr10:91567075..91567084,+#_43f6be8aecdc427b7459cacf9106d116 | p@chr10:91567075..91567084, + |
| 2.02e-32 | FFCP PHASE1:Hg19::chr10:91567075..91567084,+#_43f6be8aecdc427b7459cacf9106d116 | p@chr10:91567075..91567084, + |
| 4.03e-30 | FFCP PHASE2:Mm9::chr7:114836670..114836681,+#_66afd312bc0e8f7a97a6696e6b9a3b24 | p@chr7:114836670..114836681, + |
| 4.03e-30 | FFCP PHASE1:Mm9::chr7:31397780..31397790,-#_66afd312bc0e8f7a97a6696e6b9a3b24 | p3@Upk1a |
| 4.03e-30 | FFCP PHASE1:Mm9::chr3:92288406..92288413,-#_66afd312bc0e8f7a97a6696e6b9a3b24 | p@chr3:92288406..92288413, - |
| 4.03e-30 | FFCP PHASE2:Mm9::chr14:32955207..32955211,+#_66afd312bc0e8f7a97a6696e6b9a3b24 | p1@Msmb |
| 4.03e-30 | FFCP PHASE1:Mm9::chr7:114836670..114836681,+#_66afd312bc0e8f7a97a6696e6b9a3b24 | p@chr7:114836670..114836681, + |
| 4.03e-30 | FFCP PHASE1:Mm9::chr14:32955207..32955211,+#_66afd312bc0e8f7a97a6696e6b9a3b24 | p1@Msmb |
| 4.03e-30 | FFCP PHASE2:Mm9::chr7:31397780..31397790,-#_66afd312bc0e8f7a97a6696e6b9a3b24 | p3@Upk1a |
| 4.03e-30 | FFCP PHASE2:Mm9::chr3:92288406..92288413,-#_66afd312bc0e8f7a97a6696e6b9a3b24 | p@chr3:92288406..92288413, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr15:84847637..84847642,+#_7a2b4c988cd60b838ccc465a634e33f1 | p3@Upk3a |
| 5.61e-30 | FFCP PHASE2:Mm9::chr4:152405146..152405150,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr4:152405146..152405150, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr6:54242736..54242738,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:54242736..54242738, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr15:36485068..36485103,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr15:36485068..36485103, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr6:42543996..42544003,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:42543996..42544003, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr11:100107430..100107473,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr11:100107430..100107473, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr6:42551615..42551622,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:42551615..42551622, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr15:101506878..101506897,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr15:101506878..101506897, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr18:73894503..73894506,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr18:73894503..73894506, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr16:20188882..20188884,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr16:20188882..20188884, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr12:89223836..89223840,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr12:89223836..89223840, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr11:89595040..89595050,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr11:89595040..89595050, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chrX:75093387..75093390,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chrX:75093387..75093390, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr6:42548966..42548969,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:42548966..42548969, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr10:61188929..61188936,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr10:61188929..61188936, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr6:42543996..42544003,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:42543996..42544003, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr18:44429795..44429800,+#_7a2b4c988cd60b838ccc465a634e33f1 | p3@Npy6r |
| 5.61e-30 | FFCP PHASE1:Mm9::chr1:73048139..73048141,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr1:73048139..73048141, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr16:20188882..20188884,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr16:20188882..20188884, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr6:42547401..42547411,-#_7a2b4c988cd60b838ccc465a634e33f1 | p9@Fam115e |
| 5.61e-30 | FFCP PHASE1:Mm9::chr4:121069181..121069190,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr4:121069181..121069190, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr15:101506516..101506534,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr15:101506516..101506534, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr6:122422716..122422728,-#_7a2b4c988cd60b838ccc465a634e33f1 | p15@Rimklb |
| 5.61e-30 | FFCP PHASE2:Mm9::chr5:86802562..86802592,-#_7a2b4c988cd60b838ccc465a634e33f1 | p6@Tmprss11d |
| 5.61e-30 | FFCP PHASE2:Mm9::chr7:123747566..123747567,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr7:123747566..123747567, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr12:114453231..114453265,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr12:114453231..114453265, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr16:20186583..20186592,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr16:20186583..20186592, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr6:42535984..42535996,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:42535984..42535996, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr9:36341608..36341609,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr9:36341608..36341609, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr11:100107430..100107473,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr11:100107430..100107473, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr9:122970904..122970907,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr9:122970904..122970907, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr6:42535984..42535996,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:42535984..42535996, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr18:73894503..73894506,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr18:73894503..73894506, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr6:42535216..42535225,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:42535216..42535225, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr15:36485068..36485103,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr15:36485068..36485103, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr9:36300946..36300953,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr9:36300946..36300953, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr6:42535216..42535225,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:42535216..42535225, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr3:95514619..95514622,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr3:95514619..95514622, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr1:72981474..72981498,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr1:72981474..72981498, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr16:20186583..20186592,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr16:20186583..20186592, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr6:122422716..122422728,-#_7a2b4c988cd60b838ccc465a634e33f1 | p15@Rimklb |
| 5.61e-30 | FFCP PHASE2:Mm9::chr19:58073599..58073605,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr19:58073599..58073605, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr7:31388578..31388584,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr7:31388578..31388584, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr4:102102677..102102684,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr4:102102677..102102684, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr2:36098306..36098309,+#_7a2b4c988cd60b838ccc465a634e33f1 | p5@Ptgs1 |
| 5.61e-30 | FFCP PHASE1:Mm9::chr11:100107526..100107540,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr11:100107526..100107540, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr18:64859665..64859669,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr18:64859665..64859669, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr6:42551847..42551862,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:42551847..42551862, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr15:101506963..101506974,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr15:101506963..101506974, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr16:20188895..20188904,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr16:20188895..20188904, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which is the common receptacle for the alimentary canal, Wolffian ducts, oviducts, and the bladder.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
