UBERON:0000454: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0000454
|name=cerebral subcortex
|namespace=
|def=
|xref=BTO:0002858;;FMA:242188
|is_a=UBERON:0000064
|synonym="Cerebral medulla" EXACT [FMA:242188]...") |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 4: | Line 4: | ||
|namespace= | |namespace= | ||
|def= | |def= | ||
|xref=BTO:0002858;;FMA:242188 | |xref=BTO:0002858;;FMA:242188;;ncithesaurus:Cerebral_Subcortex | ||
|is_a=UBERON:0000064 | |is_a=UBERON:0000064 | ||
|synonym="Cerebral medulla" EXACT [FMA:242188];;"subcortex" RELATED [BTO:0002858] | |synonym="Cerebral medulla" EXACT [FMA:242188];;"subcortex" RELATED [BTO:0002858] | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
| Line 21: | Line 20: | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Latest revision as of 16:56, 26 June 2012
| Name: | cerebral subcortex | ||
|---|---|---|---|
| Xrefs: |
| ||
| Synonyms: |
"Cerebral medulla" EXACT [FMA:242188] "subcortex" RELATED [BTO:0002858] | ||
| Alt_id: | UBERON:BTO_0002858-FMA_242188 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000064(organ part) |
|---|
Children
| part of: | UBERON:0010011 (collection of basal ganglia) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10151-102I7 (amygdala, adult, donor10252)
- 10152-102I8 (putamen, adult, donor10252)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10161-103A8 (globus pallidus, adult, donor10252)
- 10164-103B2 (caudate nucleus, adult, donor10252)
- 10167-103B5 (amygdala - adult, donor10196)
- 10175-103C4 (globus pallidus - adult, donor10196)
- 10176-103C5 (putamen, adult, donor10196)
- 10177-103C6 (caudate nucleus - adult, donor10196)
... further results Mouse (Mus musculus)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10151-102I7 (amygdala, adult, donor10252)
- 10152-102I8 (putamen, adult, donor10252)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10161-103A8 (globus pallidus, adult, donor10252)
- 10164-103B2 (caudate nucleus, adult, donor10252)
- 10167-103B5 (amygdala - adult, donor10196)
- 10175-103C4 (globus pallidus - adult, donor10196)
- 10176-103C5 (putamen, adult, donor10196)
- 10177-103C6 (caudate nucleus - adult, donor10196)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000454 (cerebral subcortex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.82e-133 | FFCP PHASE2:Hg19::chr18:11751466..11751475,+#_aee87ee5233dfefca2f3537357ba1278 | p22@GNAL |
| 1.82e-133 | FFCP PHASE1:Hg19::chr18:11751466..11751475,+#_aee87ee5233dfefca2f3537357ba1278 | p22@GNAL |
| 1.42e-130 | FFCP PHASE2:Hg19::chr15:40582949..40582989,+#_b71ddddd2726d7c0cf27674fbb62e203 | p@chr15:40582949..40582989, + |
| 1.42e-130 | FFCP PHASE1:Hg19::chr15:40582949..40582989,+#_b71ddddd2726d7c0cf27674fbb62e203 | p@chr15:40582949..40582989, + |
| 1.21e-118 | FFCP PHASE1:Hg19::chr3:35722978..35722999,+#_7773e841860cf2cc91b7248c6a511c25 | p28@ARPP21 |
| 1.21e-118 | FFCP PHASE2:Hg19::chr3:35722978..35722999,+#_7773e841860cf2cc91b7248c6a511c25 | p28@ARPP21 |
| 3.02e-112 | FFCP PHASE2:Hg19::chr13:98995904..98995913,+#_bd9a58de923b6671f06511a0febe26ed | p@chr13:98995904..98995913, + |
| 3.02e-112 | FFCP PHASE1:Hg19::chr13:98995904..98995913,+#_bd9a58de923b6671f06511a0febe26ed | p@chr13:98995904..98995913, + |
| 3.66e-112 | FFCP PHASE2:Hg19::chr11:80886203..80886231,+#_745fbc7dc49a7ca0dc4ce33ed2502e82 | p@chr11:80886203..80886231, + |
| 3.66e-112 | FFCP PHASE1:Hg19::chr11:80886203..80886231,+#_745fbc7dc49a7ca0dc4ce33ed2502e82 | p@chr11:80886203..80886231, + |
| 6.51e-112 | FFCP PHASE1:Hg19::chr2:7112752..7112770,+#_503a5960a7b26cfde7a3a273724b7784 | p@chr2:7112752..7112770, + |
| 6.51e-112 | FFCP PHASE2:Hg19::chr2:7112752..7112770,+#_503a5960a7b26cfde7a3a273724b7784 | p@chr2:7112752..7112770, + |
| 7.88e-112 | FFCP PHASE1:Hg19::chr22:27727810..27727817,+#_116e948ad7af3a3791086d90bdf764ee | p3@ENST00000413244 |
| 7.88e-112 | FFCP PHASE2:Hg19::chr22:27727810..27727817,+#_116e948ad7af3a3791086d90bdf764ee | p3@ENST00000413244 |
| 4.6e-109 | FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_cd1ab349249969b4ab959fe69a5afacf | p@chr15:35546024..35546035, - |
| 4.6e-109 | FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_cd1ab349249969b4ab959fe69a5afacf | p@chr2:3853961..3853984, + |
| 4.6e-109 | FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_cd1ab349249969b4ab959fe69a5afacf | p@chr15:35546024..35546035, - |
| 4.6e-109 | FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_cd1ab349249969b4ab959fe69a5afacf | p@chr2:3853961..3853984, + |
| 4.6e-109 | FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_cd1ab349249969b4ab959fe69a5afacf | p@chr17:19390211..19390223, + |
| 4.6e-109 | FFCP PHASE2:Hg19::chr19:719510..719520,+#_cd1ab349249969b4ab959fe69a5afacf | p@chr19:719510..719520, + |
| 4.6e-109 | FFCP PHASE1:Hg19::chr19:719510..719520,+#_cd1ab349249969b4ab959fe69a5afacf | p@chr19:719510..719520, + |
| 4.6e-109 | FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_cd1ab349249969b4ab959fe69a5afacf | p@chr17:19390211..19390223, + |
| 4.01e-107 | FFCP PHASE1:Hg19::chr18:11751516..11751523,+#_31f6224d877df623d06e00f9eba45f03 | p17@GNAL |
| 4.01e-107 | FFCP PHASE2:Hg19::chr18:11751516..11751523,+#_31f6224d877df623d06e00f9eba45f03 | p17@GNAL |
| 1.41e-106 | FFCP PHASE1:Hg19::chr21:43917191..43917207,-#_880eb068e4408a88d21d71b0d2df67a4 | p@chr21:43917191..43917207, - |
| 1.41e-106 | FFCP PHASE2:Hg19::chr21:43917191..43917207,-#_880eb068e4408a88d21d71b0d2df67a4 | p@chr21:43917191..43917207, - |
| 3.33e-98 | FFCP PHASE2:Hg19::chr11:18765839..18765846,-#_537d651cd827d0ad7ab1384d664cbc91 | p10@PTPN5 |
| 3.33e-98 | FFCP PHASE1:Hg19::chr11:18765839..18765846,-#_537d651cd827d0ad7ab1384d664cbc91 | p10@PTPN5 |
| 1.43e-97 | FFCP PHASE2:Hg19::chr13:98995923..98995941,+#_26c25e45ef87485b3fd140e6e62bad4e | p@chr13:98995923..98995941, + |
| 1.43e-97 | FFCP PHASE1:Hg19::chr13:98995923..98995941,+#_26c25e45ef87485b3fd140e6e62bad4e | p@chr13:98995923..98995941, + |
| 4.08e-91 | FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_6a5fa6f18ad0d65c04b95b64d3c162fe | p@chr11:26497871..26497889, + |
| 4.08e-91 | FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_6a5fa6f18ad0d65c04b95b64d3c162fe | p@chr11:26497871..26497889, + |
| 4.08e-91 | FFCP PHASE2:Hg19::chr10:97261901..97261919,-#_6a5fa6f18ad0d65c04b95b64d3c162fe | p@chr10:97261901..97261919, - |
| 4.08e-91 | FFCP PHASE1:Hg19::chr10:97261901..97261919,-#_6a5fa6f18ad0d65c04b95b64d3c162fe | p@chr10:97261901..97261919, - |
| 4.91e-91 | FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_e8b6dea1b7a4b0055a606bb6af3be5bb | p1@ENST00000421878 |
| 4.91e-91 | FFCP PHASE2:Hg19::chr22:24828830..24828842,+#_e8b6dea1b7a4b0055a606bb6af3be5bb | p14@ADORA2A |
| 4.91e-91 | FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_e8b6dea1b7a4b0055a606bb6af3be5bb | p1@ENST00000421878 |
| 4.91e-91 | FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_e8b6dea1b7a4b0055a606bb6af3be5bb | p@chr19:1236637..1236645, - |
| 4.91e-91 | FFCP PHASE1:Hg19::chr11:26495467..26495474,+#_e8b6dea1b7a4b0055a606bb6af3be5bb | p8@ANO3 |
| 4.91e-91 | FFCP PHASE1:Hg19::chr22:24828830..24828842,+#_e8b6dea1b7a4b0055a606bb6af3be5bb | p14@ADORA2A |
| 4.91e-91 | FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_e8b6dea1b7a4b0055a606bb6af3be5bb | p@chr19:1236637..1236645, - |
| 4.91e-91 | FFCP PHASE2:Hg19::chr11:26495467..26495474,+#_e8b6dea1b7a4b0055a606bb6af3be5bb | p8@ANO3 |
| 1.7e-89 | FFCP PHASE1:Hg19::chr11:18765553..18765567,-#_7dc7fc0c87bf86473c6b55f25e53e395 | p7@PTPN5 |
| 1.7e-89 | FFCP PHASE2:Hg19::chr1:174417095..174417131,+#_7dc7fc0c87bf86473c6b55f25e53e395 | p1@GPR52 |
| 1.7e-89 | FFCP PHASE1:Hg19::chr1:174417095..174417131,+#_7dc7fc0c87bf86473c6b55f25e53e395 | p1@GPR52 |
| 1.7e-89 | FFCP PHASE2:Hg19::chr11:18765553..18765567,-#_7dc7fc0c87bf86473c6b55f25e53e395 | p7@PTPN5 |
| 2.51e-89 | FFCP PHASE1:Hg19::chr1:101003675..101003682,+#_23c4b115defff54f8f4720c154ee7f98 | p5@GPR88 |
| 2.51e-89 | FFCP PHASE2:Hg19::chr1:101003675..101003682,+#_23c4b115defff54f8f4720c154ee7f98 | p5@GPR88 |
| 2.86e-89 | FFCP PHASE1:Hg19::chr11:67174819..67174825,-#_a25e83e0ee7990f6302f0bf90245daa6 | p14@PPP1CA |
| 2.86e-89 | FFCP PHASE2:Hg19::chr11:67174819..67174825,-#_a25e83e0ee7990f6302f0bf90245daa6 | p14@PPP1CA |
| 4.81e-88 | FFCP PHASE2:Hg19::chr11:18765881..18765897,-#_c482b7d52ec452e6cb7c5a01308ad21a | p3@PTPN5 |
| 4.81e-88 | FFCP PHASE1:Hg19::chr11:18765881..18765897,-#_c482b7d52ec452e6cb7c5a01308ad21a | p3@PTPN5 |
| 1.33e-87 | FFCP PHASE1:Hg19::chr17:19390234..19390251,+#_c41fdd4dcca4e770eac8ac20943428a6 | p@chr17:19390234..19390251, + |
| 1.33e-87 | FFCP PHASE2:Hg19::chr17:19390234..19390251,+#_c41fdd4dcca4e770eac8ac20943428a6 | p@chr17:19390234..19390251, + |
| 1.37e-87 | FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_8dd9e4db1729156c52d0506098e1f485 | p@chr13:112726433..112726446, + |
| 1.37e-87 | FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_8dd9e4db1729156c52d0506098e1f485 | p@chr14:78638610..78638621, + |
| 1.37e-87 | FFCP PHASE1:Hg19::chr15:35546154..35546174,-#_8dd9e4db1729156c52d0506098e1f485 | p@chr15:35546154..35546174, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr8:25281776..25281779,-#_8dd9e4db1729156c52d0506098e1f485 | p1@GNRH1 |
| 1.37e-87 | FFCP PHASE1:Hg19::chr7:22382758..22382765,-#_8dd9e4db1729156c52d0506098e1f485 | p@chr7:22382758..22382765, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_8dd9e4db1729156c52d0506098e1f485 | p@chr2:152828264..152828299, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr7:29846088..29846091,+#_8dd9e4db1729156c52d0506098e1f485 | p20@WIPF3 |
| 1.37e-87 | FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_8dd9e4db1729156c52d0506098e1f485 | p@chr18:47967428..47967437, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_8dd9e4db1729156c52d0506098e1f485 | p@chr18:47967428..47967437, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_8dd9e4db1729156c52d0506098e1f485 | p@chr1:31352916..31352926, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr8:25281776..25281779,-#_8dd9e4db1729156c52d0506098e1f485 | p1@GNRH1 |
| 1.37e-87 | FFCP PHASE2:Hg19::chr7:22382758..22382765,-#_8dd9e4db1729156c52d0506098e1f485 | p@chr7:22382758..22382765, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_8dd9e4db1729156c52d0506098e1f485 | p@chr12:6031299..6031315, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr8:19799565..19799589,-#_8dd9e4db1729156c52d0506098e1f485 | p@chr8:19799565..19799589, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr8:19799565..19799589,-#_8dd9e4db1729156c52d0506098e1f485 | p@chr8:19799565..19799589, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr15:35546154..35546174,-#_8dd9e4db1729156c52d0506098e1f485 | p@chr15:35546154..35546174, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_8dd9e4db1729156c52d0506098e1f485 | p@chr1:31352916..31352926, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_8dd9e4db1729156c52d0506098e1f485 | p@chr14:78638610..78638621, + |
| 1.37e-87 | FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_8dd9e4db1729156c52d0506098e1f485 | p@chr2:152828264..152828299, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_8dd9e4db1729156c52d0506098e1f485 | p@chr13:112726433..112726446, + |
| 1.37e-87 | FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_8dd9e4db1729156c52d0506098e1f485 | p@chr12:6031299..6031315, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr7:29846088..29846091,+#_8dd9e4db1729156c52d0506098e1f485 | p20@WIPF3 |
| 1.79e-87 | FFCP PHASE2:Hg19::chr11:26495447..26495461,+#_60cb36ed6c41a796deccd73e1e00d00a | p5@ANO3 |
| 1.79e-87 | FFCP PHASE1:Hg19::chr10:73313437..73313451,-#_60cb36ed6c41a796deccd73e1e00d00a | p@chr10:73313437..73313451, - |
| 1.79e-87 | FFCP PHASE2:Hg19::chr10:73313437..73313451,-#_60cb36ed6c41a796deccd73e1e00d00a | p@chr10:73313437..73313451, - |
| 1.79e-87 | FFCP PHASE1:Hg19::chr11:26495447..26495461,+#_60cb36ed6c41a796deccd73e1e00d00a | p5@ANO3 |
| 2.08e-87 | FFCP PHASE1:Hg19::chr3:16851273..16851310,+#_085710a4bd957aef567a679a20cc0b95 | p@chr3:16851273..16851310, + |
| 2.08e-87 | FFCP PHASE2:Hg19::chr3:16851273..16851310,+#_085710a4bd957aef567a679a20cc0b95 | p@chr3:16851273..16851310, + |
| 2.42e-87 | FFCP PHASE1:Hg19::chr7:67899920..67899958,-#_c6409b120fdc98a5787456558622da94 | p@chr7:67899920..67899958, - |
| 2.42e-87 | FFCP PHASE2:Hg19::chr7:67899920..67899958,-#_c6409b120fdc98a5787456558622da94 | p@chr7:67899920..67899958, - |
| 2.8e-87 | FFCP PHASE2:Hg19::chr9:95569585..95569596,+#_ae5131d2c4efb9edf99bbe1895e3e2e1 | p@chr9:95569585..95569596, + |
| 2.8e-87 | FFCP PHASE1:Hg19::chr9:95569585..95569596,+#_ae5131d2c4efb9edf99bbe1895e3e2e1 | p@chr9:95569585..95569596, + |
| 4.39e-83 | FFCP PHASE2:Hg19::chr18:11751493..11751507,+#_c0af0989db42a977a5c2d6063e46146d | p12@GNAL |
| 4.39e-83 | FFCP PHASE1:Hg19::chr18:11751493..11751507,+#_c0af0989db42a977a5c2d6063e46146d | p12@GNAL |
| 3.09e-79 | FFCP PHASE1:Hg19::chr11:13461601..13461620,-#_f771df4aceea6db4eac6e8dd68dec4dd | p5@BTBD10 |
| 3.09e-79 | FFCP PHASE2:Hg19::chr11:13461601..13461620,-#_f771df4aceea6db4eac6e8dd68dec4dd | p5@BTBD10 |
| 5.29e-79 | FFCP PHASE2:Hg19::chr6:166076645..166076657,-#_a51d3457066dd516e71e218b84352ec9 | p@chr6:166076645..166076657, - |
| 5.29e-79 | FFCP PHASE1:Hg19::chr6:166076645..166076657,-#_a51d3457066dd516e71e218b84352ec9 | p@chr6:166076645..166076657, - |
| 6.06e-79 | FFCP PHASE2:Hg19::chr2:26781521..26781537,-#_a0cb812aea0350b9a265d5ba3ab9cbca | p2@OTOF |
| 6.06e-79 | FFCP PHASE1:Hg19::chr22:27727719..27727726,+#_a0cb812aea0350b9a265d5ba3ab9cbca | p2@ENST00000413244 |
| 6.06e-79 | FFCP PHASE2:Hg19::chr11:18765589..18765610,-#_a0cb812aea0350b9a265d5ba3ab9cbca | p6@PTPN5 |
| 6.06e-79 | FFCP PHASE2:Hg19::chr22:27727719..27727726,+#_a0cb812aea0350b9a265d5ba3ab9cbca | p2@ENST00000413244 |
| 6.06e-79 | FFCP PHASE1:Hg19::chr2:26781521..26781537,-#_a0cb812aea0350b9a265d5ba3ab9cbca | p2@OTOF |
| 6.06e-79 | FFCP PHASE1:Hg19::chr11:18765589..18765610,-#_a0cb812aea0350b9a265d5ba3ab9cbca | p6@PTPN5 |
| 6.93e-79 | FFCP PHASE2:Hg19::chr19:19640188..19640201,+#_6011e7e0ec982fbc108ce37c8959e4f5 | p@chr19:19640188..19640201, + |
| 6.93e-79 | FFCP PHASE1:Hg19::chr19:19640188..19640201,+#_6011e7e0ec982fbc108ce37c8959e4f5 | p@chr19:19640188..19640201, + |
