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{{UBERON
{{UBERON
|id=UBERON:0001374
|alt_id=UBERON:FMA_22356-MA_0002270
|name=biceps femoris
|anatomical_img_id=FMA:22356
|namespace=
|def="The biceps femoris is a muscle of the posterior (the back) thigh. As its name implies, it has two parts, one of which (the long head) forms part of the hamstrings muscle group. [WP,unvetted]." [Wikipedia:Biceps_femoris_muscle]
|xref=BTO:0003418;;EFO:0001418;;FMA:22356;;galen:BicepsFemoris;;http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Biceps_femoris_muscle_long_head.PNG/200px-Biceps_femoris_muscle_long_head.PNG;;MA:0002270;;ncithesaurus:Biceps_Femoris;;SCTID:181672002
|is_a=UBERON:0001630;;UBERON:0004252
|synonym="biceps femoris muscle" EXACT [BTO:0003418]
|comment=
|comment=
|alt_id=UBERON:FMA_22356-MA_0002270
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The biceps femoris is a muscle of the posterior (the back) thigh. As its name implies, it has two parts, one of which (the long head) forms part of the hamstrings muscle group. [WP,unvetted]." [Wikipedia:Biceps_femoris_muscle]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001374
|is_a=UBERON:0002463
|is_obsolete=
|located_in=
|located_in=
|name=biceps femoris
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000376
|part_of=UBERON:0000376
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim
|synonym="biceps femoris muscle" EXACT [BTO:0003418];;"musculus biceps femoris" RELATED LATIN [Wikipedia:Biceps_femoris_muscle]
|union_of=
|xref=BTO:0003418;;EFO:0001418;;FMA:22356;;galen:BicepsFemoris;;http://upload.wikimedia.org/wikipedia/commons/b/bc/Biceps_femoris_muscle_long_head.PNG;;http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Biceps_femoris_muscle_long_head.PNG/200px-Biceps_femoris_muscle_long_head.PNG;;MA:0002270;;ncithesaurus:Biceps_Femoris;;SCTID:181672002
}}
}}

Latest revision as of 17:17, 12 September 2014

Name:biceps femoris
Namespace:FANTOM
Definition:"The biceps femoris is a muscle of the posterior (the back) thigh. As its name implies, it has two parts, one of which (the long head) forms part of the hamstrings muscle group. [WP,unvetted]." [Wikipedia:Biceps_femoris_muscle]
Xrefs:
links:

BTO:0003418
EFO:0001418
FMA:22356
galen:BicepsFemoris
[1]
[2]
MA:0002270
ncithesaurus:Biceps_Femoris

SCTID:181672002
Synonyms: "biceps femoris muscle" EXACT [BTO:0003418]
"musculus biceps femoris" RELATED LATIN [Wikipedia:Biceps_femoris_muscle]
Alt_id: UBERON:FMA_22356-MA_0002270
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002463(hamstring muscle)
part_of:UBERON:0000376(hindlimb stylopod)



Children

derives from:FF:0011490 (mouse muscle - biceps femoris- neonate N30 sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 1389-42C2 (muscle (biceps femoris), neonate N30)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001374 (biceps femoris), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.07e-86FFCP PHASE2:Mm9::chr11:67056336..67056339,-#_f067e022e32843cde476c4af7ddc24e2p@chr11:67056336..67056339, -
3.07e-86FFCP PHASE1:Mm9::chr4:137551743..137551752,+#_f067e022e32843cde476c4af7ddc24e2p@chr4:137551743..137551752, +
3.07e-86FFCP PHASE2:Mm9::chr3:146557292..146557297,+#_f067e022e32843cde476c4af7ddc24e2p@chr3:146557292..146557297, +
3.07e-86FFCP PHASE2:Mm9::chr2:180116029..180116037,-#_f067e022e32843cde476c4af7ddc24e2p@chr2:180116029..180116037, -
3.07e-86FFCP PHASE1:Mm9::chr1:74793928..74793937,-#_f067e022e32843cde476c4af7ddc24e2p@chr1:74793928..74793937, -
3.07e-86FFCP PHASE1:Mm9::chr7:133602437..133602446,-#_f067e022e32843cde476c4af7ddc24e2p@chr7:133602437..133602446, -
3.07e-86FFCP PHASE1:Mm9::chr19:12044789..12044801,+#_f067e022e32843cde476c4af7ddc24e2p@chr19:12044789..12044801, +
3.07e-86FFCP PHASE1:Mm9::chr15:78022056..78022057,-#_f067e022e32843cde476c4af7ddc24e2p@chr15:78022056..78022057, -
3.07e-86FFCP PHASE1:Mm9::chr11:67056336..67056339,-#_f067e022e32843cde476c4af7ddc24e2p@chr11:67056336..67056339, -
3.07e-86FFCP PHASE1:Mm9::chr1:174146112..174146120,-#_f067e022e32843cde476c4af7ddc24e2p@chr1:174146112..174146120, -
3.07e-86FFCP PHASE2:Mm9::chr4:137551743..137551752,+#_f067e022e32843cde476c4af7ddc24e2p@chr4:137551743..137551752, +
3.07e-86FFCP PHASE2:Mm9::chr11:67056725..67056728,+#_f067e022e32843cde476c4af7ddc24e2p@chr11:67056725..67056728, +
3.07e-86FFCP PHASE2:Mm9::chr1:174146112..174146120,-#_f067e022e32843cde476c4af7ddc24e2p@chr1:174146112..174146120, -
3.07e-86FFCP PHASE1:Mm9::chr3:146557292..146557297,+#_f067e022e32843cde476c4af7ddc24e2p@chr3:146557292..146557297, +
3.07e-86FFCP PHASE1:Mm9::chr2:180115921..180115928,-#_f067e022e32843cde476c4af7ddc24e2p@chr2:180115921..180115928, -
3.07e-86FFCP PHASE1:Mm9::chr7:133591419..133591428,+#_f067e022e32843cde476c4af7ddc24e2p@chr7:133591419..133591428, +
3.07e-86FFCP PHASE2:Mm9::chr7:133591419..133591428,+#_f067e022e32843cde476c4af7ddc24e2p@chr7:133591419..133591428, +
3.07e-86FFCP PHASE1:Mm9::chr1:174149658..174149663,-#_f067e022e32843cde476c4af7ddc24e2p@chr1:174149658..174149663, -
3.07e-86FFCP PHASE2:Mm9::chr19:12044789..12044801,+#_f067e022e32843cde476c4af7ddc24e2p@chr19:12044789..12044801, +
3.07e-86FFCP PHASE1:Mm9::chr16:93712669..93712672,-#_f067e022e32843cde476c4af7ddc24e2p@chr16:93712669..93712672, -
3.07e-86FFCP PHASE2:Mm9::chr2:180115921..180115928,-#_f067e022e32843cde476c4af7ddc24e2p@chr2:180115921..180115928, -
3.07e-86FFCP PHASE2:Mm9::chr1:174149658..174149663,-#_f067e022e32843cde476c4af7ddc24e2p@chr1:174149658..174149663, -
3.07e-86FFCP PHASE2:Mm9::chr7:133602437..133602446,-#_f067e022e32843cde476c4af7ddc24e2p@chr7:133602437..133602446, -
3.07e-86FFCP PHASE2:Mm9::chr1:74793928..74793937,-#_f067e022e32843cde476c4af7ddc24e2p@chr1:74793928..74793937, -
3.07e-86FFCP PHASE2:Mm9::chr15:78022056..78022057,-#_f067e022e32843cde476c4af7ddc24e2p@chr15:78022056..78022057, -
3.07e-86FFCP PHASE1:Mm9::chr11:67056725..67056728,+#_f067e022e32843cde476c4af7ddc24e2p@chr11:67056725..67056728, +
3.07e-86FFCP PHASE2:Mm9::chr16:93712669..93712672,-#_f067e022e32843cde476c4af7ddc24e2p@chr16:93712669..93712672, -
3.07e-86FFCP PHASE1:Mm9::chr2:180116029..180116037,-#_f067e022e32843cde476c4af7ddc24e2p@chr2:180116029..180116037, -
2.74e-44FFCP PHASE1:Mm9::chr11:66928384..66928391,-#_ac871736c44c5407af689825a75e1feap@chr11:66928384..66928391, -
2.74e-44FFCP PHASE2:Mm9::chr12:74145515..74145524,+#_ac871736c44c5407af689825a75e1feap@chr12:74145515..74145524, +
2.74e-44FFCP PHASE1:Mm9::chr5:130349139..130349144,-#_ac871736c44c5407af689825a75e1feap@chr5:130349139..130349144, -
2.74e-44FFCP PHASE2:Mm9::chr15:83962465..83962470,-#_ac871736c44c5407af689825a75e1feap@chr15:83962465..83962470, -
2.74e-44FFCP PHASE1:Mm9::chr4:150281432..150281439,-#_ac871736c44c5407af689825a75e1feap@chr4:150281432..150281439, -
2.74e-44FFCP PHASE2:Mm9::chr4:99628302..99628307,+#_ac871736c44c5407af689825a75e1feap9@Pgm2
2.74e-44FFCP PHASE2:Mm9::chr6:14558423..14558432,+#_ac871736c44c5407af689825a75e1feap@chr6:14558423..14558432, +
2.74e-44FFCP PHASE2:Mm9::chr7:134353840..134353843,-#_ac871736c44c5407af689825a75e1feap@chr7:134353840..134353843, -
2.74e-44FFCP PHASE1:Mm9::chr2:180115767..180115776,-#_ac871736c44c5407af689825a75e1feap@chr2:180115767..180115776, -
2.74e-44FFCP PHASE1:Mm9::chr15:78021983..78021992,-#_ac871736c44c5407af689825a75e1feap@chr15:78021983..78021992, -
2.74e-44FFCP PHASE1:Mm9::chr11:67066194..67066212,-#_ac871736c44c5407af689825a75e1feap@chr11:67066194..67066212, -
2.74e-44FFCP PHASE1:Mm9::chr7:51761564..51761580,-#_ac871736c44c5407af689825a75e1feap@chr7:51761564..51761580, -
2.74e-44FFCP PHASE2:Mm9::chr11:67066194..67066212,-#_ac871736c44c5407af689825a75e1feap@chr11:67066194..67066212, -
2.74e-44FFCP PHASE2:Mm9::chr19:4871076..4871091,+#_ac871736c44c5407af689825a75e1feap@chr19:4871076..4871091, +
2.74e-44FFCP PHASE1:Mm9::chr1:174145171..174145176,-#_ac871736c44c5407af689825a75e1feap@chr1:174145171..174145176, -
2.74e-44FFCP PHASE1:Mm9::chr4:150281470..150281484,-#_ac871736c44c5407af689825a75e1feap@chr4:150281470..150281484, -
2.74e-44FFCP PHASE2:Mm9::chr1:174145171..174145176,-#_ac871736c44c5407af689825a75e1feap@chr1:174145171..174145176, -
2.74e-44FFCP PHASE2:Mm9::chr2:180892493..180892512,-#_ac871736c44c5407af689825a75e1feap@chr2:180892493..180892512, -
2.74e-44FFCP PHASE1:Mm9::chr15:83962465..83962470,-#_ac871736c44c5407af689825a75e1feap@chr15:83962465..83962470, -
2.74e-44FFCP PHASE1:Mm9::chr18:61123512..61123517,+#_ac871736c44c5407af689825a75e1feap@chr18:61123512..61123517, +
2.74e-44FFCP PHASE2:Mm9::chr2:180115767..180115776,-#_ac871736c44c5407af689825a75e1feap@chr2:180115767..180115776, -
2.74e-44FFCP PHASE2:Mm9::chr11:75572402..75572409,+#_ac871736c44c5407af689825a75e1feap@chr11:75572402..75572409, +
2.74e-44FFCP PHASE1:Mm9::chr11:67064461..67064462,-#_ac871736c44c5407af689825a75e1feap@chr11:67064461..67064462, -
2.74e-44FFCP PHASE2:Mm9::chr11:66928384..66928391,-#_ac871736c44c5407af689825a75e1feap@chr11:66928384..66928391, -
2.74e-44FFCP PHASE1:Mm9::chr7:20000316..20000323,-#_ac871736c44c5407af689825a75e1feap@chr7:20000316..20000323, -
2.74e-44FFCP PHASE2:Mm9::chr11:67064461..67064462,-#_ac871736c44c5407af689825a75e1feap@chr11:67064461..67064462, -
2.74e-44FFCP PHASE1:Mm9::chr7:134353840..134353843,-#_ac871736c44c5407af689825a75e1feap@chr7:134353840..134353843, -
2.74e-44FFCP PHASE2:Mm9::chr18:61123512..61123517,+#_ac871736c44c5407af689825a75e1feap@chr18:61123512..61123517, +
2.74e-44FFCP PHASE2:Mm9::chr7:51761564..51761580,-#_ac871736c44c5407af689825a75e1feap@chr7:51761564..51761580, -
2.74e-44FFCP PHASE2:Mm9::chr8:88039733..88039767,+#_ac871736c44c5407af689825a75e1feap6@Gpt2
2.74e-44FFCP PHASE1:Mm9::chr6:14558423..14558432,+#_ac871736c44c5407af689825a75e1feap@chr6:14558423..14558432, +
2.74e-44FFCP PHASE1:Mm9::chr11:75572402..75572409,+#_ac871736c44c5407af689825a75e1feap@chr11:75572402..75572409, +
2.74e-44FFCP PHASE2:Mm9::chr15:78021983..78021992,-#_ac871736c44c5407af689825a75e1feap@chr15:78021983..78021992, -
2.74e-44FFCP PHASE1:Mm9::chr12:74145515..74145524,+#_ac871736c44c5407af689825a75e1feap@chr12:74145515..74145524, +
2.74e-44FFCP PHASE2:Mm9::chr19:4868028..4868035,-#_ac871736c44c5407af689825a75e1feap@chr19:4868028..4868035, -
2.74e-44FFCP PHASE2:Mm9::chr4:150276200..150276207,-#_ac871736c44c5407af689825a75e1feap18@Park7
2.74e-44FFCP PHASE2:Mm9::chr4:150281432..150281439,-#_ac871736c44c5407af689825a75e1feap@chr4:150281432..150281439, -
2.74e-44FFCP PHASE1:Mm9::chr19:4871076..4871091,+#_ac871736c44c5407af689825a75e1feap@chr19:4871076..4871091, +
2.74e-44FFCP PHASE1:Mm9::chr2:52091112..52091123,-#_ac871736c44c5407af689825a75e1feap@chr2:52091112..52091123, -
2.74e-44FFCP PHASE2:Mm9::chr7:20000316..20000323,-#_ac871736c44c5407af689825a75e1feap@chr7:20000316..20000323, -
2.74e-44FFCP PHASE2:Mm9::chr10:32803031..32803040,+#_ac871736c44c5407af689825a75e1feap6@Trdn
2.74e-44FFCP PHASE2:Mm9::chr5:130349139..130349144,-#_ac871736c44c5407af689825a75e1feap@chr5:130349139..130349144, -
2.74e-44FFCP PHASE1:Mm9::chr4:99628302..99628307,+#_ac871736c44c5407af689825a75e1feap9@Pgm2
2.74e-44FFCP PHASE1:Mm9::chr10:32803031..32803040,+#_ac871736c44c5407af689825a75e1feap6@Trdn
2.74e-44FFCP PHASE1:Mm9::chr19:4868028..4868035,-#_ac871736c44c5407af689825a75e1feap@chr19:4868028..4868035, -
2.74e-44FFCP PHASE1:Mm9::chr4:150276200..150276207,-#_ac871736c44c5407af689825a75e1feap18@Park7
2.74e-44FFCP PHASE1:Mm9::chr2:180892493..180892512,-#_ac871736c44c5407af689825a75e1feap@chr2:180892493..180892512, -
2.74e-44FFCP PHASE2:Mm9::chr2:52091112..52091123,-#_ac871736c44c5407af689825a75e1feap@chr2:52091112..52091123, -
2.74e-44FFCP PHASE2:Mm9::chr4:150281470..150281484,-#_ac871736c44c5407af689825a75e1feap@chr4:150281470..150281484, -
2.74e-44FFCP PHASE1:Mm9::chr8:88039733..88039767,+#_ac871736c44c5407af689825a75e1feap6@Gpt2
7.47e-44FFCP PHASE1:Mm9::chr14:32342812..32342822,-#_ce8895f09e985a2b877a4389422c6ad4p@chr14:32342812..32342822, -
7.47e-44FFCP PHASE2:Mm9::chr17:48572171..48572179,-#_ce8895f09e985a2b877a4389422c6ad4p3@Apobec2
7.47e-44FFCP PHASE1:Mm9::chr11:80256200..80256205,+#_ce8895f09e985a2b877a4389422c6ad4p@chr11:80256200..80256205, +
7.47e-44FFCP PHASE1:Mm9::chr17:48572171..48572179,-#_ce8895f09e985a2b877a4389422c6ad4p3@Apobec2
7.47e-44FFCP PHASE1:Mm9::chr16:31275480..31275511,+#_ce8895f09e985a2b877a4389422c6ad4p@chr16:31275480..31275511, +
7.47e-44FFCP PHASE2:Mm9::chr11:80256200..80256205,+#_ce8895f09e985a2b877a4389422c6ad4p@chr11:80256200..80256205, +
7.47e-44FFCP PHASE1:Mm9::chr14:31693434..31693443,+#_ce8895f09e985a2b877a4389422c6ad4p@chr14:31693434..31693443, +
7.47e-44FFCP PHASE1:Mm9::chr19:46686975..46686984,+#_ce8895f09e985a2b877a4389422c6ad4p@chr19:46686975..46686984, +
7.47e-44FFCP PHASE2:Mm9::chr16:31275480..31275511,+#_ce8895f09e985a2b877a4389422c6ad4p@chr16:31275480..31275511, +
7.47e-44FFCP PHASE1:Mm9::chr2:60560588..60560599,-#_ce8895f09e985a2b877a4389422c6ad4p10@Itgb6
7.47e-44FFCP PHASE2:Mm9::chr14:32342812..32342822,-#_ce8895f09e985a2b877a4389422c6ad4p@chr14:32342812..32342822, -
7.47e-44FFCP PHASE2:Mm9::chr19:46686975..46686984,+#_ce8895f09e985a2b877a4389422c6ad4p@chr19:46686975..46686984, +
7.47e-44FFCP PHASE2:Mm9::chr2:60560588..60560599,-#_ce8895f09e985a2b877a4389422c6ad4p10@Itgb6
7.47e-44FFCP PHASE1:Mm9::chr9:62513870..62513876,-#_ce8895f09e985a2b877a4389422c6ad4p@chr9:62513870..62513876, -
7.47e-44FFCP PHASE2:Mm9::chr9:62513870..62513876,-#_ce8895f09e985a2b877a4389422c6ad4p@chr9:62513870..62513876, -
7.47e-44FFCP PHASE2:Mm9::chr14:31693434..31693443,+#_ce8895f09e985a2b877a4389422c6ad4p@chr14:31693434..31693443, +
2.87e-30FFCP PHASE1:Mm9::chr2:121256607..121256609,+#_a1cc0512f9d530af4252c78ab589eb9dp@chr2:121256607..121256609, +
2.87e-30FFCP PHASE1:Mm9::chr2:29015275..29015276,-#_a1cc0512f9d530af4252c78ab589eb9dp@chr2:29015275..29015276, -
2.87e-30FFCP PHASE1:Mm9::chr1:174148446..174148455,-#_a1cc0512f9d530af4252c78ab589eb9dp@chr1:174148446..174148455, -
2.87e-30FFCP PHASE2:Mm9::chr17:67981824..67981867,-#_a1cc0512f9d530af4252c78ab589eb9dp@chr17:67981824..67981867, -
2.87e-30FFCP PHASE2:Mm9::chr19:4869386..4869396,+#_a1cc0512f9d530af4252c78ab589eb9dp@chr19:4869386..4869396, +
2.87e-30FFCP PHASE1:Mm9::chr11:66954472..66954496,-#_a1cc0512f9d530af4252c78ab589eb9dp@chr11:66954472..66954496, -

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