UBERON:0001468: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0001468
|name=intervertebral symphysis
|namespace=
|def=
|xref=FMA:25511;;MA:0001514;;SCTID:244512000
|is_a=UBERON:0002216;;UBERON:0005174
|synonym=...") |
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{{UBERON | {{UBERON | ||
|alt_id=UBERON:FMA_25511-MA_0001514 | |alt_id=UBERON:FMA_25511-MA_0001514 | ||
| | |comment=AO notes: FMA has 'intervertebral joint' as a GAT, and has two distinct classes 'intervertebral symphysis' and 'intervertebral syndesmosis', but note that the latter do not connect the centra | ||
|created_by= | |created_by= | ||
| | |def="The joint between adjacent vertebral bodies. May be composed of the nucleus pulposus, annular ligament, and the anterior and posterior longitudinal ligaments." [http://www.medilexicon.com/medicaldictionary.php?t | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001468 | |||
|is_a=UBERON:0002216 ;;UBERON:0004120 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=intervertebral joint | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001130 | |part_of=UBERON:0001130 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset= | |||
|synonym="inter-centrum joint" EXACT [];;"inter-vertebral joint" EXACT [];;"intervertebral symphysis" EXACT [FMA:25511];;"joint of vertebral body" EXACT [FMA:25511];;"vertebral joint" BROAD [] | |||
|union_of= | |||
|xref=FMA:25511;;MA:0001514;;ncithesaurus:Vertebral_Joint;;SCTID:244512000 | |||
}} | }} | ||
Latest revision as of 17:18, 12 September 2014
| Name: | intervertebral joint | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The joint between adjacent vertebral bodies. May be composed of the nucleus pulposus, annular ligament, and the anterior and posterior longitudinal ligaments." [http://www.medilexicon.com/medicaldictionary.php?t | ||
| Xrefs: |
| ||
| Synonyms: |
"inter-centrum joint" EXACT [] "inter-vertebral joint" EXACT [] "intervertebral symphysis" EXACT [FMA:25511] "joint of vertebral body" EXACT [FMA:25511] "vertebral joint" BROAD [] | ||
| Comments: | AO notes: FMA has 'intervertebral joint' as a GAT, and has two distinct classes 'intervertebral symphysis' and 'intervertebral syndesmosis', but note that the latter do not connect the centra | ||
| Alt_id: | UBERON:FMA_25511-MA_0001514 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002216(symphysis),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| part_of: | UBERON:0001130(vertebral column) |
Children
| part of: | UBERON:0011135 (intervertebral cartilage) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11248-116E6 (Anulus Pulposus Cell, donor1)
- 11252-116F1 (Nucleus Pulposus Cell, donor1)
- 11409-118E5 (Nucleus Pulposus Cell, donor2)
- 11462-119B4 (Nucleus Pulposus Cell, donor3)
- 11463-119B5 (Anulus Pulposus Cell, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001468 (intervertebral joint), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.25e-162 | FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_49dfcab96b2b7ea5c106be8dd7f74b58 | p@chr3:174737010..174737023, + |
| 1.25e-162 | FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_49dfcab96b2b7ea5c106be8dd7f74b58 | p@chr3:174737010..174737023, + |
| 3.92e-140 | FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_c121b8d54ec08227b926f0b37b285079 | p4@PAX1 |
| 3.92e-140 | FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_c121b8d54ec08227b926f0b37b285079 | p4@PAX1 |
| 4.22e-99 | FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_b752e559a3bc5902b8f0ff190df08d8f | p@chr5:30104176..30104187, - |
| 4.22e-99 | FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_b752e559a3bc5902b8f0ff190df08d8f | p@chr5:30104176..30104187, - |
| 1.06e-78 | FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_d3b6a2c1270a696d815d5f264032614e | p4@NKX3-2 |
| 1.06e-78 | FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_d3b6a2c1270a696d815d5f264032614e | p4@NKX3-2 |
| 2.52e-71 | FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_e9580448b413ecf7b255af1447f6c538 | p@chr9:114135497..114135526, - |
| 2.52e-71 | FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_e9580448b413ecf7b255af1447f6c538 | p@chr9:114135497..114135526, - |
| 7.4e-71 | FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_993086174b364ae646d4a0096fe0b2a2 | p@chr2:241897125..241897142, - |
| 7.4e-71 | FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_993086174b364ae646d4a0096fe0b2a2 | p@chr2:241897125..241897142, - |
| 6.33e-70 | FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_75a325ba37e9a65391a06b77586fac81 | p@chr3:80727046..80727051, - |
| 6.33e-70 | FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_75a325ba37e9a65391a06b77586fac81 | p@chr3:80727046..80727051, - |
| 4.8e-67 | FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_73ccab6d64c9e4cfdfeea74900e14ced | p15@SNED1 |
| 4.8e-67 | FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_73ccab6d64c9e4cfdfeea74900e14ced | p15@SNED1 |
| 1.24e-66 | FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_5bb8b731dd5360e402db74ce4db6df04 | p20@CAPZB |
| 1.24e-66 | FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_5bb8b731dd5360e402db74ce4db6df04 | p20@CAPZB |
| 1.26e-62 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_08ef1ee6d023d18f3b259332c0d69701 | p@chr1:19778678..19778689, - |
| 1.26e-62 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_08ef1ee6d023d18f3b259332c0d69701 | p@chr1:19778678..19778689, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_04cd10e7b1017a0d6a171ff5ead83ebb | p@chr2:241897189..241897221, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_04cd10e7b1017a0d6a171ff5ead83ebb | p@chr2:241897189..241897221, - |
| 1.55e-57 | FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_af14cdb57884894d64829f84f0f8a6c7 | p1@uc010aki.1 |
| 1.55e-57 | FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_af14cdb57884894d64829f84f0f8a6c7 | p1@uc010aki.1 |
| 4.09e-56 | FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_0b9ddc637ebedaf82ed73975df180466 | p6@SIX4 |
| 4.09e-56 | FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_0b9ddc637ebedaf82ed73975df180466 | p6@SIX4 |
| 3.74e-53 | FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_6590f4fdd6c9d129c4be9bc0dbaa8dd2 | p3@uc010aki.1 |
| 3.74e-53 | FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_6590f4fdd6c9d129c4be9bc0dbaa8dd2 | p3@uc010aki.1 |
| 1.15e-51 | FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_be2087aeb7e87fd59a8b1b7f514302a9 | p3@PAX1 |
| 1.15e-51 | FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_be2087aeb7e87fd59a8b1b7f514302a9 | p3@PAX1 |
| 2.3e-51 | FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_54f26fd98bca5c0918119f3dd3b99a99 | p@chr10:81923378..81923389, - |
| 2.3e-51 | FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_54f26fd98bca5c0918119f3dd3b99a99 | p@chr10:81923378..81923389, - |
| 3.24e-51 | FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_314b1a5a72c61a6814b7fbe41e3091ba | p@chr2:12248310..12248334, - |
| 3.24e-51 | FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_314b1a5a72c61a6814b7fbe41e3091ba | p@chr2:12248310..12248334, - |
| 8.0e-51 | FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_10a22045d89dbaa3552b632d160b2120 | p19@HDAC9 |
| 8.0e-51 | FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_10a22045d89dbaa3552b632d160b2120 | p19@HDAC9 |
| 5.06e-49 | FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_1bd06ce9fa924006d7a4e7bc84606005 | p@chr7:158224707..158224729, - |
| 5.06e-49 | FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_1bd06ce9fa924006d7a4e7bc84606005 | p@chr7:158224707..158224729, - |
| 5.24e-48 | FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_fc347ac81feaec39c80804382248900a | p@chr1:65888177..65888194, + |
| 5.24e-48 | FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_fc347ac81feaec39c80804382248900a | p@chr1:65888177..65888194, + |
| 2.98e-45 | FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_deecb612de712f1c45ace9f8ce8fb1d3 | p3@NKX3-2 |
| 2.98e-45 | FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_deecb612de712f1c45ace9f8ce8fb1d3 | p3@NKX3-2 |
| 2.92e-44 | FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_b524bbf896b92e0d64288e2897568e84 | p1@MGC27382 |
| 2.92e-44 | FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_b524bbf896b92e0d64288e2897568e84 | p1@MGC27382 |
| 1.71e-43 | FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_8043595012ecdce23c0b8da75aa1d1aa | p18@HDAC9 |
| 1.71e-43 | FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_8043595012ecdce23c0b8da75aa1d1aa | p18@HDAC9 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_c8d1ef7475037d58937138b0c94d6323 | p@chr13:24914614..24914622, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_c8d1ef7475037d58937138b0c94d6323 | p@chr9:33028063..33028067, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_c8d1ef7475037d58937138b0c94d6323 | p@chr13:24914614..24914622, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_c8d1ef7475037d58937138b0c94d6323 | p@chr9:33028063..33028067, - |
| 1.64e-40 | FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_9dc0863c9b715fdb0b9e35c66b9f8957 | p1@PAX1 |
| 1.64e-40 | FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_9dc0863c9b715fdb0b9e35c66b9f8957 | p1@PAX1 |
| 1.81e-40 | FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_7d3ab1f5eb1be07c99c66fbc51e2d6c3 | p5@PTGFR |
| 1.81e-40 | FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_7d3ab1f5eb1be07c99c66fbc51e2d6c3 | p5@PTGFR |
| 2.13e-40 | FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_77cec2907e768e4edbf105d2a1ea2b78 | p@chr2:241897363..241897398, + |
| 2.13e-40 | FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_77cec2907e768e4edbf105d2a1ea2b78 | p@chr2:241897363..241897398, + |
| 3.04e-39 | FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_e2ba82a133381e4787cf71d0ee014c25 | p2@PAX1 |
| 3.04e-39 | FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_e2ba82a133381e4787cf71d0ee014c25 | p2@PAX1 |
| 7.19e-39 | FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_bf424eaae208ad3040adf7e2f9e1390a | p@chr5:140887761..140887777, + |
| 7.19e-39 | FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_bf424eaae208ad3040adf7e2f9e1390a | p@chr5:140887761..140887777, + |
| 7.19e-39 | FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_bf424eaae208ad3040adf7e2f9e1390a | p16@HDAC9 |
| 7.19e-39 | FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_bf424eaae208ad3040adf7e2f9e1390a | p16@HDAC9 |
| 1.24e-38 | FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_9ad5a0564f2e44a293062d981cd1a908 | p4@NUP54 |
| 1.24e-38 | FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_9ad5a0564f2e44a293062d981cd1a908 | p4@NUP54 |
| 2.08e-38 | FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_5cba1f32d1795161046c9bbd2c44c224 | p@chr2:241938405..241938416, + |
| 2.08e-38 | FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_5cba1f32d1795161046c9bbd2c44c224 | p@chr2:241938405..241938416, + |
| 3.34e-38 | FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_12b9d126e67c4b8226ae2c586f8c7b03 | p1@NKX3-2 |
| 3.34e-38 | FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_12b9d126e67c4b8226ae2c586f8c7b03 | p1@NKX3-2 |
| 3.68e-38 | FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_a966b2b82a429d58989ec9e8bf25e2d4 | p10@SYNJ2 |
| 3.68e-38 | FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_a966b2b82a429d58989ec9e8bf25e2d4 | p10@SYNJ2 |
| 5.39e-38 | FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_729e80033e87fa148ffc8f1197bbc990 | p@chr9:16138889..16138902, - |
| 5.39e-38 | FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_729e80033e87fa148ffc8f1197bbc990 | p@chr9:16138889..16138902, - |
| 8.66e-38 | FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_44c8a6fcb087b93c28352f79b3b20053 | p2@ENST00000518706 |
| 8.66e-38 | FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_44c8a6fcb087b93c28352f79b3b20053 | p2@ENST00000518706 |
| 2.96e-37 | FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_d9bf157a789364ba55ef390bc64c8fd9 | p1@ENST00000436845 |
| 2.96e-37 | FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_d9bf157a789364ba55ef390bc64c8fd9 | p1@ENST00000436845 |
| 6.92e-37 | FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_5fe64446d18b2671fd194e7a71c3ffa7 | p12@CDK5RAP2 |
| 6.92e-37 | FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_5fe64446d18b2671fd194e7a71c3ffa7 | p12@CDK5RAP2 |
| 3.28e-36 | FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_702cd8d21ff599d485e8dc9ebe8043cd | p1@ENST00000413519 |
| 3.28e-36 | FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_702cd8d21ff599d485e8dc9ebe8043cd | p1@ENST00000413519 |
| 9.62e-35 | FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_b31b60c3a0d1c46b3ad35762a013f11c | p4@PAX9 |
| 9.62e-35 | FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_b31b60c3a0d1c46b3ad35762a013f11c | p4@PAX9 |
| 1.8e-34 | FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_083add6575f77189a5bac9ca00adf141 | p@chr7:100202784..100202796, - |
| 1.8e-34 | FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_083add6575f77189a5bac9ca00adf141 | p@chr7:100202784..100202796, - |
| 3.69e-34 | FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_eedd06ebbe788ca2e93c10c4c7e12107 | p8@HOXC6 |
| 3.69e-34 | FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_eedd06ebbe788ca2e93c10c4c7e12107 | p8@HOXC6 |
| 5.52e-34 | FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_69839067a386c1158f2277a1cd994413 | p6@CCDC86 |
| 5.52e-34 | FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_69839067a386c1158f2277a1cd994413 | p6@CCDC86 |
| 1.43e-33 | FFCP PHASE1:Hg19::chr20:21695435..21695452,+#_445fb9e578d15817ea9677f46d763b4a | p@chr20:21695435..21695452, + |
| 1.43e-33 | FFCP PHASE2:Hg19::chr20:21695435..21695452,+#_445fb9e578d15817ea9677f46d763b4a | p@chr20:21695435..21695452, + |
| 5.36e-33 | FFCP PHASE2:Hg19::chr16:70795228..70795237,+#_64029d51a228c17a568fd3c93bc2a2cb | p@chr16:70795228..70795237, + |
| 5.36e-33 | FFCP PHASE1:Hg19::chr16:70795228..70795237,+#_64029d51a228c17a568fd3c93bc2a2cb | p@chr16:70795228..70795237, + |
| 1.05e-32 | FFCP PHASE1:Hg19::chr3:158384350..158384362,-#_8deba1acbb224ffdd92526a69dea5645 | p@chr3:158384350..158384362, - |
| 1.05e-32 | FFCP PHASE2:Hg19::chr3:158384350..158384362,-#_8deba1acbb224ffdd92526a69dea5645 | p@chr3:158384350..158384362, - |
| 1.7e-32 | FFCP PHASE2:Hg19::chr2:158345440..158345449,-#_5e19db0e46a23229cdfc8e613114c7f3 | p9@CYTIP |
| 1.7e-32 | FFCP PHASE1:Hg19::chr2:158345440..158345449,-#_5e19db0e46a23229cdfc8e613114c7f3 | p9@CYTIP |
| 2.34e-32 | FFCP PHASE2:Hg19::chr18:12012068..12012098,+#_11592a7bba411e354dfee69a03bbe9c0 | p@chr18:12012068..12012098, + |
| 2.34e-32 | FFCP PHASE1:Hg19::chr18:12012068..12012098,+#_11592a7bba411e354dfee69a03bbe9c0 | p@chr18:12012068..12012098, + |
| 2.79e-31 | FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_2abfcf85f4597859f4b5344ec6771390 | p1@ENST00000555639 |
| 2.79e-31 | FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_2abfcf85f4597859f4b5344ec6771390 | p1@ENST00000555639 |
