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{{UBERON
{{UBERON
|id=UBERON:0002066
|name=umbilical vein
|namespace=
|def="The umbilical vein is a blood vessel present during fetal development that carries oxygenated blood from the placenta to the growing fetus. [WP,unvetted]." [Wikipedia:Umbilical_vein]
|xref=BTO:0001509;;EFO:0001940;;EHDAA:1034;;EHDAA:488;;EMAPA:16243;;EMAPA:16375;;EV:0100392;;FMA:70317;;GAID:542;;http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Gray502.png/200px-Gray502.png;;MA:0002249;;MESH:A.07.231.908.670.874;;ncithesaurus:Umbilical_Vein;;OpenCyc:Mx4rdu17MmWaEd2AAABQjYGu0g;;RETIRED_EHDAA2:0002107;;SCTID:367567000;;VHOG:0000015
|is_a=UBERON:0001638
|synonym=
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_70317-MA_0002249
|alt_id=UBERON:FMA_70317-MA_0002249
|disjoint_from=
|comment=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The umbilical vein is a blood vessel present during fetal development that carries oxygenated blood from the placenta to the growing fetus. [WP,unvetted]." [Wikipedia:Umbilical_vein]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002066
|is_a=UBERON:0001638 ;;UBERON:0010260
|is_obsolete=
|located_in=
|located_in=
|name=umbilical vein
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim
|synonym="vena umbilicalis" RELATED LATIN [Wikipedia:Umbilical_vein]
|union_of=
|xref=BTO:0001509;;EFO:0001940;;EHDAA:1034;;EHDAA:488;;EMAPA:16243;;EMAPA:16375;;EV:0100392;;FMA:70317;;GAID:542;;http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Gray502.png/200px-Gray502.png;;MA:0002249;;MESH:A.07.231.908.670.874;;ncithesaurus:Umbilical_Vein;;OpenCyc:Mx4rdu17MmWaEd2AAABQjYGu0g;;RETIRED_EHDAA2:0002107;;SCTID:367567000;;VHOG:0000015
}}
}}

Latest revision as of 17:25, 12 September 2014

Name:umbilical vein
Namespace:FANTOM
Definition:"The umbilical vein is a blood vessel present during fetal development that carries oxygenated blood from the placenta to the growing fetus. [WP,unvetted]." [Wikipedia:Umbilical_vein]
Xrefs:
links:

BTO:0001509
EFO:0001940
EHDAA:1034
EHDAA:488
EMAPA:16243
EMAPA:16375
EV:0100392
FMA:70317
GAID:542
[ Gray502.png Gray502.png]
[ 200px-Gray502.png 200px-Gray502.png]
MA:0002249
MESH:A.07.231.908.670.874
ncithesaurus:Umbilical_Vein
OpenCyc:Mx4rdu17MmWaEd2AAABQjYGu0g
RETIRED_EHDAA2:0002107
SCTID:367567000

VHOG:0000015
Synonyms: "vena umbilicalis" RELATED LATIN [Wikipedia:Umbilical_vein]
Alt_id: UBERON:FMA_70317-MA_0002249
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001638(vein),UBERON:0010260(umbilical blood vessel)



Children

part of:FF:0000177 (human smooth muscle cell of umbilical vein sample),CL:0002588 (smooth muscle cell of the umbilical vein),CL:0002618 (endothelial cell of umbilical vein)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
  • 11324-117E1 (Endothelial Cells - Umbilical vein, donor2)
  • 11400-118D5 (Endothelial Cells - Umbilical vein, donor3)
  • 11541-120B2 (Smooth Muscle Cells - Umbilical Vein, donor1)
  • 11621-122B1 (Smooth Muscle Cells - Umbilical Vein, donor2)
  • 11702-123B1 (Smooth Muscle Cells - Umbilical Vein, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002066 (umbilical vein), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.49e-79FFCP PHASE2:Hg19::chr1:78512168..78512171,-#_07f66eaaa21305e2c55666d5bbd06ee2p@chr1:78512168..78512171, -
3.49e-79FFCP PHASE1:Hg19::chr1:78512168..78512171,-#_07f66eaaa21305e2c55666d5bbd06ee2p@chr1:78512168..78512171, -
6.03e-60FFCP PHASE2:Hg19::chr1:78510648..78510661,+#_27fe2473e57b832c224a3fdd131f95b2p7@GIPC2
6.03e-60FFCP PHASE1:Hg19::chr10:94590950..94590955,+#_27fe2473e57b832c224a3fdd131f95b2p13@EXOC6
6.03e-60FFCP PHASE1:Hg19::chr1:78510648..78510661,+#_27fe2473e57b832c224a3fdd131f95b2p7@GIPC2
6.03e-60FFCP PHASE2:Hg19::chr10:94590950..94590955,+#_27fe2473e57b832c224a3fdd131f95b2p13@EXOC6
2.01e-59FFCP PHASE1:Hg19::chr12:105962745..105962748,+#_b0126ca7bb6fffeaf315be71e54e82acp@chr12:105962745..105962748, +
2.01e-59FFCP PHASE2:Hg19::chr12:105962745..105962748,+#_b0126ca7bb6fffeaf315be71e54e82acp@chr12:105962745..105962748, +
2.73e-51FFCP PHASE1:Hg19::chr1:78511901..78511912,+#_765b7835ade7cdaea1d5ccbb52e972cdp6@GIPC2
2.73e-51FFCP PHASE2:Hg19::chr1:78511901..78511912,+#_765b7835ade7cdaea1d5ccbb52e972cdp6@GIPC2
6.45e-51FFCP PHASE1:Hg19::chr11:59875891..59875903,-#_436c9b5f1de57e0b73080174c320822ep@chr11:59875891..59875903, -
6.45e-51FFCP PHASE2:Hg19::chr11:59875891..59875903,-#_436c9b5f1de57e0b73080174c320822ep@chr11:59875891..59875903, -
1.89e-45FFCP PHASE1:Hg19::chr18:53146977..53146999,-#_9b136b7b314cfb164209b75d314fae1dp@chr18:53146977..53146999, -
1.89e-45FFCP PHASE2:Hg19::chr18:53146977..53146999,-#_9b136b7b314cfb164209b75d314fae1dp@chr18:53146977..53146999, -
4.69e-45FFCP PHASE1:Hg19::chr10:94590997..94591006,+#_a13617dcac2e7feb127dfa91e26acf8ap11@EXOC6
4.69e-45FFCP PHASE2:Hg19::chr10:94590997..94591006,+#_a13617dcac2e7feb127dfa91e26acf8ap11@EXOC6
6.33e-45FFCP PHASE1:Hg19::chr12:105863737..105863745,+#_b71758e6fe82906a6618dcaa14594237p@chr12:105863737..105863745, +
6.33e-45FFCP PHASE2:Hg19::chr12:105863737..105863745,+#_b71758e6fe82906a6618dcaa14594237p@chr12:105863737..105863745, +
1.48e-40FFCP PHASE1:Hg19::chr17:54543642..54543647,+#_f37d67fbe5f33a5a78b382aa77e54025p@chr17:54543642..54543647, +
1.48e-40FFCP PHASE2:Hg19::chr17:54543635..54543636,+#_f37d67fbe5f33a5a78b382aa77e54025p@chr17:54543635..54543636, +
1.48e-40FFCP PHASE1:Hg19::chr17:54543635..54543636,+#_f37d67fbe5f33a5a78b382aa77e54025p@chr17:54543635..54543636, +
1.48e-40FFCP PHASE2:Hg19::chr17:54543642..54543647,+#_f37d67fbe5f33a5a78b382aa77e54025p@chr17:54543642..54543647, +
1.81e-40FFCP PHASE1:Hg19::chr12:105889929..105889933,+#_b7610f15e04e7d99c71c5f9eab2d65b1p@chr12:105889929..105889933, +
1.81e-40FFCP PHASE2:Hg19::chr12:105889929..105889933,+#_b7610f15e04e7d99c71c5f9eab2d65b1p@chr12:105889929..105889933, +
1.81e-40FFCP PHASE2:Hg19::chr16:82788994..82789018,+#_b7610f15e04e7d99c71c5f9eab2d65b1p@chr16:82788994..82789018, +
1.81e-40FFCP PHASE1:Hg19::chr16:82788994..82789018,+#_b7610f15e04e7d99c71c5f9eab2d65b1p@chr16:82788994..82789018, +
2.55e-40FFCP PHASE2:Hg19::chr5:63803524..63803561,+#_74d0efd26b61db8973670d23e1f96055p15@RGS7BP
2.55e-40FFCP PHASE1:Hg19::chr5:63803524..63803561,+#_74d0efd26b61db8973670d23e1f96055p15@RGS7BP
6.5e-40FFCP PHASE2:Hg19::chr21:27284505..27284518,-#_12b4c874b1cb72babcc020b6b550fe7dp@chr21:27284505..27284518, -
6.5e-40FFCP PHASE1:Hg19::chr21:27284505..27284518,-#_12b4c874b1cb72babcc020b6b550fe7dp@chr21:27284505..27284518, -
1.39e-36FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_6ed5ae85e05333386c4cce71eea37b81p@chr1:172926077..172926120, -
1.39e-36FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_6ed5ae85e05333386c4cce71eea37b81p@chr1:172926077..172926120, -
1.78e-36FFCP PHASE1:Hg19::chr19:7861475..7861491,+#_2269aeccc95ebdd23843933031ea0366p@chr19:7861475..7861491, +
1.78e-36FFCP PHASE2:Hg19::chr19:7861475..7861491,+#_2269aeccc95ebdd23843933031ea0366p@chr19:7861475..7861491, +
1.79e-33FFCP PHASE1:Hg19::chr10:59999608..59999621,-#_970d77e476139fcceecce376beb9d61cp@chr10:59999608..59999621, -
1.79e-33FFCP PHASE2:Hg19::chr10:59999608..59999621,-#_970d77e476139fcceecce376beb9d61cp@chr10:59999608..59999621, -
5.98e-33FFCP PHASE2:Hg19::chr1:186946611..186946622,+#_79583f933cf2d0ac864c621a8957b1b9p@chr1:186946611..186946622, +
5.98e-33FFCP PHASE1:Hg19::chr1:186946611..186946622,+#_79583f933cf2d0ac864c621a8957b1b9p@chr1:186946611..186946622, +
1.56e-30FFCP PHASE1:Hg19::chr12:105863627..105863633,+#_a7b4117c746bdd9b7c026f875d133d34p@chr12:105863627..105863633, +
1.56e-30FFCP PHASE2:Hg19::chr12:105863627..105863633,+#_a7b4117c746bdd9b7c026f875d133d34p@chr12:105863627..105863633, +
2.53e-28FFCP PHASE1:Hg19::chr6:142622846..142622853,+#_509e90d817360d919d8909991b3525a4p12@GPR126
2.53e-28FFCP PHASE2:Hg19::chr6:142622846..142622853,+#_509e90d817360d919d8909991b3525a4p12@GPR126
4.32e-28FFCP PHASE1:Hg19::chr13:75941109..75941132,-#_70ffac78aa1c5eba6e14366059824291p@chr13:75941109..75941132, -
4.32e-28FFCP PHASE2:Hg19::chr13:75941109..75941132,-#_70ffac78aa1c5eba6e14366059824291p@chr13:75941109..75941132, -
4.41e-28FFCP PHASE1:Hg19::chr6:136359549..136359565,+#_e01b943e27ae5c418e310d6e877d47a8p2@AB384352
4.41e-28FFCP PHASE2:Hg19::chr6:136359549..136359565,+#_e01b943e27ae5c418e310d6e877d47a8p2@AB384352
2.72e-27FFCP PHASE2:Hg19::chr2:72789511..72789554,-#_266dc3544e4b5a47b532cd20b5fe5054p@chr2:72789511..72789554, -
2.72e-27FFCP PHASE1:Hg19::chr2:72789511..72789554,-#_266dc3544e4b5a47b532cd20b5fe5054p@chr2:72789511..72789554, -
3.11e-27FFCP PHASE1:Hg19::chr15:22545370..22545372,+#_a09d75fd16fb83d358c386d0002136b6p@chr15:22545370..22545372, +
3.11e-27FFCP PHASE2:Hg19::chr15:22545370..22545372,+#_a09d75fd16fb83d358c386d0002136b6p@chr15:22545370..22545372, +
4.63e-27FFCP PHASE1:Hg19::chr11:59876093..59876098,-#_e6505d71f47be8e47042da1afef860cdp@chr11:59876093..59876098, -
4.63e-27FFCP PHASE2:Hg19::chr11:59876093..59876098,-#_e6505d71f47be8e47042da1afef860cdp@chr11:59876093..59876098, -
1.3e-24FFCP PHASE2:Hg19::chr9:35754222..35754237,-#_9c32b8869f0c2c080ae2a7b726383ac7p3@MSMP
1.3e-24FFCP PHASE1:Hg19::chr9:35754222..35754237,-#_9c32b8869f0c2c080ae2a7b726383ac7p3@MSMP
1.02e-23FFCP PHASE1:Hg19::chr10:94607612..94607616,+#_17fd5865b337a18bdc605c8e75fd58b4p@chr10:94607612..94607616, +
1.02e-23FFCP PHASE2:Hg19::chr10:94607612..94607616,+#_17fd5865b337a18bdc605c8e75fd58b4p@chr10:94607612..94607616, +
1.14e-23FFCP PHASE1:Hg19::chr1:186946659..186946664,+#_18276e103911f7a904170a02fb87c9b5p@chr1:186946659..186946664, +
1.14e-23FFCP PHASE2:Hg19::chr1:186946659..186946664,+#_18276e103911f7a904170a02fb87c9b5p@chr1:186946659..186946664, +
1.28e-23FFCP PHASE2:Hg19::chr3:154801312..154801336,+#_052d5807c5c28d36cd2bea360675440dp29@MME
1.28e-23FFCP PHASE1:Hg19::chr3:154801312..154801336,+#_052d5807c5c28d36cd2bea360675440dp29@MME
1.81e-23FFCP PHASE2:Hg19::chr9:14231115..14231119,-#_0a63cd1a0c9c3a742e4dcbcf0d2986fap@chr9:14231115..14231119, -
1.81e-23FFCP PHASE1:Hg19::chr9:14231115..14231119,-#_0a63cd1a0c9c3a742e4dcbcf0d2986fap@chr9:14231115..14231119, -
1.24e-22FFCP PHASE1:Hg19::chr9:139563124..139563129,+#_dec7335e372a2d09769399e4893ce369p@chr9:139563124..139563129, +
1.24e-22FFCP PHASE2:Hg19::chr9:139563124..139563129,+#_dec7335e372a2d09769399e4893ce369p@chr9:139563124..139563129, +
3.33e-22FFCP PHASE1:Hg19::chr10:94590895..94590905,+#_1cc4690fbebb0c2daf11c8ba6fd525f1p8@EXOC6
3.33e-22FFCP PHASE2:Hg19::chr10:94590895..94590905,+#_1cc4690fbebb0c2daf11c8ba6fd525f1p8@EXOC6
4.76e-22FFCP PHASE1:Hg19::chr10:50153703..50153720,+#_5d34bba44ecfeb3ebe3cb097084b4a25p7@WDFY4
4.76e-22FFCP PHASE2:Hg19::chr10:50153703..50153720,+#_5d34bba44ecfeb3ebe3cb097084b4a25p7@WDFY4
4.21e-21FFCP PHASE1:Hg19::chr16:4181309..4181310,-#_e1d6a2857ba8159394e49e96f110eac6p@chr16:4181309..4181310, -
4.21e-21FFCP PHASE2:Hg19::chr4:86684588..86684603,-#_e1d6a2857ba8159394e49e96f110eac6p@chr4:86684588..86684603, -
4.21e-21FFCP PHASE2:Hg19::chr16:4181309..4181310,-#_e1d6a2857ba8159394e49e96f110eac6p@chr16:4181309..4181310, -
4.21e-21FFCP PHASE1:Hg19::chr4:86684588..86684603,-#_e1d6a2857ba8159394e49e96f110eac6p@chr4:86684588..86684603, -
5.15e-21FFCP PHASE1:Hg19::chr2:56216738..56216739,-#_bb3f4f82c1a716e34e76162af1ff59f5p@chr2:56216738..56216739, -
5.15e-21FFCP PHASE1:Hg19::chr19:7861495..7861500,+#_bb3f4f82c1a716e34e76162af1ff59f5p@chr19:7861495..7861500, +
5.15e-21FFCP PHASE2:Hg19::chr19:7861495..7861500,+#_bb3f4f82c1a716e34e76162af1ff59f5p@chr19:7861495..7861500, +
5.15e-21FFCP PHASE2:Hg19::chr2:56216738..56216739,-#_bb3f4f82c1a716e34e76162af1ff59f5p@chr2:56216738..56216739, -
7.89e-20FFCP PHASE1:Hg19::chr12:96841308..96841312,+#_f2f17d3fd4535d9bb4f210d5c5b1557dp@chr12:96841308..96841312, +
7.89e-20FFCP PHASE2:Hg19::chr12:96841308..96841312,+#_f2f17d3fd4535d9bb4f210d5c5b1557dp@chr12:96841308..96841312, +
4.08e-19FFCP PHASE2:Hg19::chr21:39869867..39869880,-#_473b25541436b69f40cb712507a36994p@chr21:39869867..39869880, -
4.08e-19FFCP PHASE1:Hg19::chr21:39869867..39869880,-#_473b25541436b69f40cb712507a36994p@chr21:39869867..39869880, -
4.68e-19FFCP PHASE1:Hg19::chr12:105863705..105863718,+#_4975586bb6a900b61b9a03ef4d089b55p@chr12:105863705..105863718, +
4.68e-19FFCP PHASE2:Hg19::chr12:105863705..105863718,+#_4975586bb6a900b61b9a03ef4d089b55p@chr12:105863705..105863718, +
9.47e-19FFCP PHASE2:Hg19::chr5:21824001..21824014,+#_0730e736d130b6b6979b891248fc0766p@chr5:21824001..21824014, +
9.47e-19FFCP PHASE1:Hg19::chr5:21824001..21824014,+#_0730e736d130b6b6979b891248fc0766p@chr5:21824001..21824014, +
1.03e-18FFCP PHASE1:Hg19::chr10:50153735..50153750,+#_0228ed0508d82ee5f18efd571d721e86p6@WDFY4
1.03e-18FFCP PHASE2:Hg19::chr10:50153735..50153750,+#_0228ed0508d82ee5f18efd571d721e86p6@WDFY4
1.09e-18FFCP PHASE1:Hg19::chr12:10794718..10794741,+#_71e7a1e3d3c787366c9ae1c54f187a38p@chr12:10794718..10794741, +
1.09e-18FFCP PHASE2:Hg19::chr12:10794718..10794741,+#_71e7a1e3d3c787366c9ae1c54f187a38p@chr12:10794718..10794741, +
1.22e-18FFCP PHASE1:Hg19::chr6:78171746..78171769,+#_9ab41bd0f5af4b28e1ffdf0b88a1ceebp@chr6:78171746..78171769, +
1.22e-18FFCP PHASE2:Hg19::chr6:78171746..78171769,+#_9ab41bd0f5af4b28e1ffdf0b88a1ceebp@chr6:78171746..78171769, +
1.35e-18FFCP PHASE2:Hg19::chr2:197226784..197226793,-#_3e3e01bdfbb007d9a61faf864d81c130p21@HECW2
1.35e-18FFCP PHASE1:Hg19::chr2:197226784..197226793,-#_3e3e01bdfbb007d9a61faf864d81c130p21@HECW2
1.62e-18FFCP PHASE2:Hg19::chr3:169078072..169078076,-#_c24ac06e11ae409b6252a4af6e3216d2p@chr3:169078072..169078076, -
1.62e-18FFCP PHASE1:Hg19::chr3:169078072..169078076,-#_c24ac06e11ae409b6252a4af6e3216d2p@chr3:169078072..169078076, -
1.66e-18FFCP PHASE2:Hg19::chr1:61415107..61415136,-#_9c1ad2c51177b9f25aa7e7d072384b7fp@chr1:61415107..61415136, -
1.66e-18FFCP PHASE1:Hg19::chr1:61415107..61415136,-#_9c1ad2c51177b9f25aa7e7d072384b7fp@chr1:61415107..61415136, -
1.77e-18FFCP PHASE2:Hg19::chr2:18479033..18479051,+#_5a79115775acaf14ec8341961baf0fffp@chr2:18479033..18479051, +
1.77e-18FFCP PHASE1:Hg19::chr2:18479033..18479051,+#_5a79115775acaf14ec8341961baf0fffp@chr2:18479033..18479051, +
1.97e-18FFCP PHASE2:Hg19::chr10:94591023..94591034,+#_84412c6e3622f6c5201789939ca35df4p7@EXOC6
1.97e-18FFCP PHASE1:Hg19::chr10:94591023..94591034,+#_84412c6e3622f6c5201789939ca35df4p7@EXOC6

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