Personal tools

UBERON:0002104: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0002104 |name=visual system |namespace= |def="." [Wikipedia:Visual_system] |xref=AAO:0000632;;FMA:7191;;MA:0002444;;ncithesaurus:Visual_System;;NIF_Gr...")
 
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002104
|alt_id=UBERON:FMA_7191-MA_0002444-ZFA_0001127
|name=visual system
|namespace=
|def="." [Wikipedia:Visual_system]
|xref=AAO:0000632;;FMA:7191;;MA:0002444;;ncithesaurus:Visual_System;;NIF_GrossAnatomy:FMAID_7191;;OpenCyc:Mx4rvViCtpwpEbGdrcN5Y29ycA;;SCTID:281831001;;TAO:0001127;;XAO:0003198;;ZFA:0001127
|is_a=UBERON:0001032
|synonym="visual organ system" EXACT []
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_7191-MA_0002444-ZFA_0001127
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="." [Wikipedia:Visual_system]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002104
|is_a=UBERON:0001032
|is_obsolete=
|located_in=
|located_in=
|name=visual system
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0002105;;UBPROP:0000001 "The sensory system used for sight.[AAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="visual organ system" EXACT []
|union_of=
|xref=AAO:0000632;;FMA:7191;;MA:0002444;;ncithesaurus:Visual_System;;NIF_GrossAnatomy:FMAID_7191;;OpenCyc:Mx4rvViCtpwpEbGdrcN5Y29ycA;;SCTID:281831001;;TAO:0001127;;XAO:0003198;;ZFA:0001127
}}
}}

Latest revision as of 17:26, 12 September 2014

Name:visual system
Namespace:FANTOM
Definition:"." [Wikipedia:Visual_system]
Xrefs:
links:

AAO:0000632
FMA:7191
MA:0002444
ncithesaurus:Visual_System
NIF_GrossAnatomy:FMAID_7191
OpenCyc:Mx4rvViCtpwpEbGdrcN5Y29ycA
SCTID:281831001
TAO:0001127
XAO:0003198

ZFA:0001127
Synonyms: "visual organ system" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_7191-MA_0002444-ZFA_0001127
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001032(sensory system)



Children

part of:UBERON:0000941 (cranial nerve II),UBERON:0000970 (eye),UBERON:0004904 (nerve connecting eye with brain)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002104 (visual system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.31e-86FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p5@Zfp365
1.31e-86FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31817987..31818013, +
1.31e-86FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr3:129525389..129525400, -
1.31e-86FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p1@Mir184
1.31e-86FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p4@Dct
1.31e-86FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p4@Dct
1.31e-86FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31818263..31818276, +
1.31e-86FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr16:21743134..21743139, -
1.31e-86FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p3@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31818106..31818119, +
1.31e-86FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p6@Celf1
1.31e-86FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr3:129525389..129525400, -
1.31e-86FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p6@Celf1
1.31e-86FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr16:21743134..21743139, -
1.31e-86FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr10:127668442..127668453, +
1.31e-86FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p8@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p5@Zfp365
1.31e-86FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr11:77532391..77532408, -
1.31e-86FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31818106..31818119, +
1.31e-86FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31817987..31818013, +
1.31e-86FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr11:77532283..77532316, -
1.31e-86FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p3@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr10:127668442..127668453, +
1.31e-86FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr11:77532391..77532408, -
1.31e-86FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p1@E130218I03Rik
1.31e-86FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p1@E130218I03Rik
1.31e-86FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31815126..31815139, -
1.31e-86FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p8@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31818263..31818276, +
1.31e-86FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p1@Mir184
1.31e-86FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr11:77532283..77532316, -
1.31e-86FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31815126..31815139, -
3.94e-79FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_26600325f04617b5b2b5b79eecee9412p10@SIX3
3.94e-79FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_26600325f04617b5b2b5b79eecee9412p10@SIX3
2.3e-78FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_bab7acc6b4bab0150a140a302bac9bdfp3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_bab7acc6b4bab0150a140a302bac9bdfp3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_bab7acc6b4bab0150a140a302bac9bdfp@chr7:64675015..64675028, +
2.3e-78FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_bab7acc6b4bab0150a140a302bac9bdfp@chr7:64675015..64675028, +
2.82e-78FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_b452dec6668dc92b7a12a259287a165fp6@Pax6
2.82e-78FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_b452dec6668dc92b7a12a259287a165fp@chr6:97891135..97891147, +
2.82e-78FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_b452dec6668dc92b7a12a259287a165fp6@Pax6
2.82e-78FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_b452dec6668dc92b7a12a259287a165fp@chr6:97891135..97891147, +
3.46e-78FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_acd9740fa39f3796fafb3bef1e90b816p1@4933429O19Rik
3.46e-78FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_acd9740fa39f3796fafb3bef1e90b816p1@4933429O19Rik
4.97e-77FFCP PHASE1:Mm9::chr16:56204438..56204451,+#_68da2ef74d650f130a3759934aadb399p1@Impg2
4.97e-77FFCP PHASE1:Mm9::chr1:38092602..38092616,+#_68da2ef74d650f130a3759934aadb399p@chr1:38092602..38092616, +
4.97e-77FFCP PHASE2:Mm9::chr1:65147224..65147236,-#_68da2ef74d650f130a3759934aadb399p@chr1:65147224..65147236, -
4.97e-77FFCP PHASE1:Mm9::chr4:19208009..19208054,+#_68da2ef74d650f130a3759934aadb399p1@Cngb3
4.97e-77FFCP PHASE2:Mm9::chr5:112696408..112696421,-#_68da2ef74d650f130a3759934aadb399p@chr5:112696408..112696421, -
4.97e-77FFCP PHASE1:Mm9::chr5:112698505..112698537,-#_68da2ef74d650f130a3759934aadb399p@chr5:112698505..112698537, -
4.97e-77FFCP PHASE1:Mm9::chr3:34488839..34488876,+#_68da2ef74d650f130a3759934aadb399p1@ENSMUST00000173365
4.97e-77FFCP PHASE2:Mm9::chr5:112690636..112690656,+#_68da2ef74d650f130a3759934aadb399p@chr5:112690636..112690656, +
4.97e-77FFCP PHASE1:Mm9::chr8:77582194..77582219,+#_68da2ef74d650f130a3759934aadb399p@chr8:77582194..77582219, +
4.97e-77FFCP PHASE2:Mm9::chr1:65149656..65149674,-#_68da2ef74d650f130a3759934aadb399p2@Cryga
4.97e-77FFCP PHASE2:Mm9::chr7:28282354..28282365,+#_68da2ef74d650f130a3759934aadb399p@chr7:28282354..28282365, +
4.97e-77FFCP PHASE2:Mm9::chr17:31818629..31818644,+#_68da2ef74d650f130a3759934aadb399p@chr17:31818629..31818644, +
4.97e-77FFCP PHASE2:Mm9::chr14:49501519..49501530,-#_68da2ef74d650f130a3759934aadb399p@chr14:49501519..49501530, -
4.97e-77FFCP PHASE2:Mm9::chr5:113506006..113506025,-#_68da2ef74d650f130a3759934aadb399p@chr5:113506006..113506025, -
4.97e-77FFCP PHASE1:Mm9::chr14:35413322..35413333,-#_68da2ef74d650f130a3759934aadb399p1@Opn4
4.97e-77FFCP PHASE2:Mm9::chr8:77582172..77582183,+#_68da2ef74d650f130a3759934aadb399p@chr8:77582172..77582183, +
4.97e-77FFCP PHASE1:Mm9::chr5:112692580..112692595,+#_68da2ef74d650f130a3759934aadb399p@chr5:112692580..112692595, +
4.97e-77FFCP PHASE1:Mm9::chr10:127668799..127668810,+#_68da2ef74d650f130a3759934aadb399p5@LOC100504989, p5@Timeless
4.97e-77FFCP PHASE2:Mm9::chr5:112690744..112690755,+#_68da2ef74d650f130a3759934aadb399p@chr5:112690744..112690755, +
4.97e-77FFCP PHASE1:Mm9::chr1:65147201..65147212,-#_68da2ef74d650f130a3759934aadb399p@chr1:65147201..65147212, -
4.97e-77FFCP PHASE2:Mm9::chr11:95705150..95705170,+#_68da2ef74d650f130a3759934aadb399p3@Gngt2
4.97e-77FFCP PHASE1:Mm9::chr5:112688342..112688357,+#_68da2ef74d650f130a3759934aadb399p@chr5:112688342..112688357, +
4.97e-77FFCP PHASE1:Mm9::chr5:113506006..113506025,-#_68da2ef74d650f130a3759934aadb399p@chr5:113506006..113506025, -
4.97e-77FFCP PHASE2:Mm9::chr5:112675556..112675574,-#_68da2ef74d650f130a3759934aadb399p@chr5:112675556..112675574, -
4.97e-77FFCP PHASE2:Mm9::chr10:127668686..127668697,+#_68da2ef74d650f130a3759934aadb399p4@LOC100504989, p4@Timeless
4.97e-77FFCP PHASE2:Mm9::chr1:65146997..65147021,-#_68da2ef74d650f130a3759934aadb399p@chr1:65146997..65147021, -
4.97e-77FFCP PHASE2:Mm9::chr3:129525405..129525428,-#_68da2ef74d650f130a3759934aadb399p1@Rrh
4.97e-77FFCP PHASE2:Mm9::chr9:107964319..107964338,-#_68da2ef74d650f130a3759934aadb399p11@Rnf123
4.97e-77FFCP PHASE1:Mm9::chr5:112690963..112690994,+#_68da2ef74d650f130a3759934aadb399p@chr5:112690963..112690994, +
4.97e-77FFCP PHASE2:Mm9::chr1:38092538..38092550,+#_68da2ef74d650f130a3759934aadb399p@chr1:38092538..38092550, +
4.97e-77FFCP PHASE1:Mm9::chr9:107964319..107964338,-#_68da2ef74d650f130a3759934aadb399p11@Rnf123
4.97e-77FFCP PHASE2:Mm9::chr17:31817947..31817965,+#_68da2ef74d650f130a3759934aadb399p@chr17:31817947..31817965, +
4.97e-77FFCP PHASE2:Mm9::chr11:77532270..77532280,-#_68da2ef74d650f130a3759934aadb399p@chr11:77532270..77532280, -
4.97e-77FFCP PHASE2:Mm9::chr14:35413322..35413333,-#_68da2ef74d650f130a3759934aadb399p1@Opn4
4.97e-77FFCP PHASE2:Mm9::chr5:112698505..112698537,-#_68da2ef74d650f130a3759934aadb399p@chr5:112698505..112698537, -
4.97e-77FFCP PHASE1:Mm9::chr2:93906955..93906973,-#_68da2ef74d650f130a3759934aadb399p2@Hsd17b12
4.97e-77FFCP PHASE1:Mm9::chr1:38092538..38092550,+#_68da2ef74d650f130a3759934aadb399p@chr1:38092538..38092550, +
4.97e-77FFCP PHASE1:Mm9::chr17:31816514..31816526,+#_68da2ef74d650f130a3759934aadb399p@chr17:31816514..31816526, +
4.97e-77FFCP PHASE1:Mm9::chr7:29477874..29477889,+#_68da2ef74d650f130a3759934aadb399p6@Fbxo27
4.97e-77FFCP PHASE2:Mm9::chr17:31818215..31818239,-#_68da2ef74d650f130a3759934aadb399p@chr17:31818215..31818239, -
4.97e-77FFCP PHASE1:Mm9::chr1:65147224..65147236,-#_68da2ef74d650f130a3759934aadb399p@chr1:65147224..65147236, -
4.97e-77FFCP PHASE1:Mm9::chr3:129525405..129525428,-#_68da2ef74d650f130a3759934aadb399p1@Rrh
4.97e-77FFCP PHASE2:Mm9::chr5:112688342..112688357,+#_68da2ef74d650f130a3759934aadb399p@chr5:112688342..112688357, +
4.97e-77FFCP PHASE2:Mm9::chr14:52730585..52730607,+#_68da2ef74d650f130a3759934aadb399p1@Rpgrip1
4.97e-77FFCP PHASE1:Mm9::chr17:31818629..31818644,+#_68da2ef74d650f130a3759934aadb399p@chr17:31818629..31818644, +
4.97e-77FFCP PHASE1:Mm9::chr6:115162924..115162933,+#_68da2ef74d650f130a3759934aadb399p@chr6:115162924..115162933, +
4.97e-77FFCP PHASE1:Mm9::chr10:93761330..93761358,-#_68da2ef74d650f130a3759934aadb399p1@Gm4792
4.97e-77FFCP PHASE2:Mm9::chr10:127668799..127668810,+#_68da2ef74d650f130a3759934aadb399p5@LOC100504989, p5@Timeless
4.97e-77FFCP PHASE2:Mm9::chr3:129525435..129525448,-#_68da2ef74d650f130a3759934aadb399p2@Rrh
4.97e-77FFCP PHASE2:Mm9::chr5:112690963..112690994,+#_68da2ef74d650f130a3759934aadb399p@chr5:112690963..112690994, +
4.97e-77FFCP PHASE1:Mm9::chr1:65149656..65149674,-#_68da2ef74d650f130a3759934aadb399p2@Cryga
4.97e-77FFCP PHASE1:Mm9::chr10:127668480..127668491,+#_68da2ef74d650f130a3759934aadb399p@chr10:127668480..127668491, +
4.97e-77FFCP PHASE1:Mm9::chr5:113507470..113507483,-#_68da2ef74d650f130a3759934aadb399p@chr5:113507470..113507483, -
4.97e-77FFCP PHASE2:Mm9::chr5:112686483..112686494,+#_68da2ef74d650f130a3759934aadb399p@chr5:112686483..112686494, +
4.97e-77FFCP PHASE1:Mm9::chr5:112686483..112686494,+#_68da2ef74d650f130a3759934aadb399p@chr5:112686483..112686494, +
4.97e-77FFCP PHASE1:Mm9::chr17:31816584..31816600,+#_68da2ef74d650f130a3759934aadb399p@chr17:31816584..31816600, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "The sensory system used for sight.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002104&oldid=3277373"