Personal tools

UBERON:0002600: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0002600 |name=limbic lobe |namespace= |def="The limbic lobe (also known as the Cingulate) is a portion of the brain associated with functions such as o...")
 
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002600
|alt_id=UBERON:NIF_GrossAnatomy_birnlex_1128-FMA_72719
|name=limbic lobe
|anatomical_img_id=FMA:72719
|namespace=
|def="The limbic lobe (also known as the Cingulate) is a portion of the brain associated with functions such as olfaction and emotion. It contains parts of other lobes, including the frontal, parietal, and temporal. Its main components are the fornicate gyrus, the hippocampus, and the amygdala It is related to the term limbic system, but unlike that term, 'limbic lobe' is a part of the Terminologia Anatomica, and there is less disagreement over what is included in the 'limbic lobe' than there is over what is included in the 'limbic system'. [WP,unvetted]." [Wikipedia:Limbic_lobe]
|xref=FMA:72719;;http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Human_brain_inferior-medial_view_description.JPG/200px-Human_brain_inferior-medial_view_description.JPG;;NIF_GrossAnatomy:birnlex_1128;;SCTID:279215006
|is_a=UBERON:0003022
|synonym="fornicate gyrus" EXACT [FMA:72719];;"grande lobe limbique of broca" EXACT [];;"limbic lobe (carpenter)" EXACT []
|comment=
|comment=
|alt_id=UBERON:NIF_GrossAnatomy_birnlex_1128-FMA_72719
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The limbic lobe (also known as the Cingulate) is a portion of the brain associated with functions such as olfaction and emotion. It contains parts of other lobes, including the frontal, parietal, and temporal. Its main components are the fornicate gyrus, the hippocampus, and the amygdala It is related to the term limbic system, but unlike that term, 'limbic lobe' is a part of the Terminologia Anatomica, and there is less disagreement over what is included in the 'limbic lobe' than there is over what is included in the 'limbic system'. [WP,unvetted]." [Wikipedia:Limbic_lobe]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002600
|is_a=UBERON:0016526
|is_obsolete=
|located_in=
|located_in=
|name=limbic lobe
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim
|synonym="fornicate gyrus" EXACT [FMA:72719];;"grande lobe limbique of broca" EXACT [];;"limbic lobe (carpenter)" EXACT [];;"lobus limbicus" RELATED LATIN [Wikipedia:Limbic_lobe]
|union_of=
|xref=FMA:72719;;http://upload.wikimedia.org/wikipedia/commons/7/7e/Human_brain_inferior-medial_view_description.JPG;;http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Human_brain_inferior-medial_view_description.JPG/200px-Human_brain_inferior-medial_view_description.JPG;;NIF_GrossAnatomy:birnlex_1128;;SCTID:279215006
}}
}}

Latest revision as of 17:33, 12 September 2014

Name:limbic lobe
Namespace:FANTOM
Definition:"The limbic lobe (also known as the Cingulate) is a portion of the brain associated with functions such as olfaction and emotion. It contains parts of other lobes, including the frontal, parietal, and temporal. Its main components are the fornicate gyrus, the hippocampus, and the amygdala It is related to the term limbic system, but unlike that term, 'limbic lobe' is a part of the Terminologia Anatomica, and there is less disagreement over what is included in the 'limbic lobe' than there is over what is included in the 'limbic system'. [WP,unvetted]." [Wikipedia:Limbic_lobe]
Xrefs:
links:

FMA:72719
[1]
[2]
NIF_GrossAnatomy:birnlex_1128

SCTID:279215006
Synonyms: "fornicate gyrus" EXACT [FMA:72719]
"grande lobe limbique of broca" EXACT []
"limbic lobe (carpenter)" EXACT []
"lobus limbicus" RELATED LATIN [Wikipedia:Limbic_lobe]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1128-FMA_72719
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0016526(lobe of cerebral hemisphere)



Children

part of:UBERON:0001954 (Ammon's horn)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002600 (limbic lobe), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.68e-99FFCP PHASE2:Hg19::chrX:148561320..148561329,-#_e15f3afe11fc9f6139dd2112d6985f6fp@chrX:148561320..148561329, -
5.68e-99FFCP PHASE1:Hg19::chrX:148561320..148561329,-#_e15f3afe11fc9f6139dd2112d6985f6fp@chrX:148561320..148561329, -
5.68e-99FFCP PHASE1:Hg19::chr2:149881275..149881284,+#_e15f3afe11fc9f6139dd2112d6985f6fp@chr2:149881275..149881284, +
5.68e-99FFCP PHASE2:Hg19::chr2:149881275..149881284,+#_e15f3afe11fc9f6139dd2112d6985f6fp@chr2:149881275..149881284, +
1.55e-98FFCP PHASE1:Hg19::chrX:110464144..110464149,+#_c8ca1afcf63df10d8f1313c9bc1de7cfp@chrX:110464144..110464149, +
1.55e-98FFCP PHASE1:Hg19::chr2:187628574..187628585,+#_c8ca1afcf63df10d8f1313c9bc1de7cfp@chr2:187628574..187628585, +
1.55e-98FFCP PHASE2:Hg19::chr2:187628574..187628585,+#_c8ca1afcf63df10d8f1313c9bc1de7cfp@chr2:187628574..187628585, +
1.55e-98FFCP PHASE2:Hg19::chr6:132937900..132937907,-#_c8ca1afcf63df10d8f1313c9bc1de7cfp@chr6:132937900..132937907, -
1.55e-98FFCP PHASE1:Hg19::chr6:132937900..132937907,-#_c8ca1afcf63df10d8f1313c9bc1de7cfp@chr6:132937900..132937907, -
1.55e-98FFCP PHASE2:Hg19::chrX:110464144..110464149,+#_c8ca1afcf63df10d8f1313c9bc1de7cfp@chrX:110464144..110464149, +
4.22e-98FFCP PHASE2:Hg19::chr3:71777824..71777833,-#_30694b88c6d72431d586d3c2c915e5f8p28@EIF4E3
4.22e-98FFCP PHASE1:Hg19::chr3:172166557..172166598,+#_30694b88c6d72431d586d3c2c915e5f8p@chr3:172166557..172166598, +
4.22e-98FFCP PHASE2:Hg19::chr11:79784329..79784335,-#_30694b88c6d72431d586d3c2c915e5f8p@chr11:79784329..79784335, -
4.22e-98FFCP PHASE1:Hg19::chr3:71777824..71777833,-#_30694b88c6d72431d586d3c2c915e5f8p28@EIF4E3
4.22e-98FFCP PHASE1:Hg19::chr11:79784329..79784335,-#_30694b88c6d72431d586d3c2c915e5f8p@chr11:79784329..79784335, -
4.22e-98FFCP PHASE2:Hg19::chr5:119669127..119669137,-#_30694b88c6d72431d586d3c2c915e5f8p4@ENST00000514240
4.22e-98FFCP PHASE1:Hg19::chr5:119669127..119669137,-#_30694b88c6d72431d586d3c2c915e5f8p4@ENST00000514240
4.22e-98FFCP PHASE2:Hg19::chr3:172166557..172166598,+#_30694b88c6d72431d586d3c2c915e5f8p@chr3:172166557..172166598, +
7.79e-79FFCP PHASE2:Hg19::chr18:24435190..24435201,-#_546a1c8ed555479df28d677893658985p@chr18:24435190..24435201, -
7.79e-79FFCP PHASE1:Hg19::chr18:24435190..24435201,-#_546a1c8ed555479df28d677893658985p@chr18:24435190..24435201, -
7.41e-67FFCP PHASE2:Hg19::chr10:125454018..125454027,+#_552dce9d21c3f9cb06b4f1cd834c60c7p@chr10:125454018..125454027, +
7.41e-67FFCP PHASE1:Hg19::chr10:125454018..125454027,+#_552dce9d21c3f9cb06b4f1cd834c60c7p@chr10:125454018..125454027, +
1.04e-66FFCP PHASE1:Hg19::chr3:12225071..12225084,+#_1230a433d56cdc71f237b9b7c9fb115dp15@SYN2
1.04e-66FFCP PHASE2:Hg19::chr3:12225071..12225084,+#_1230a433d56cdc71f237b9b7c9fb115dp15@SYN2
7.73e-66FFCP PHASE2:Hg19::chrX:72432586..72432597,-#_92f3f7081d14a03df1bba8127f4931edp@chrX:72432586..72432597, -
7.73e-66FFCP PHASE1:Hg19::chrX:72432586..72432597,-#_92f3f7081d14a03df1bba8127f4931edp@chrX:72432586..72432597, -
2.02e-57FFCP PHASE2:Hg19::chr7:130745294..130745303,-#_83db8e147fae440b13cf77de82e38afcp@chr7:130745294..130745303, -
2.02e-57FFCP PHASE2:Hg19::chrX:13789306..13789315,-#_83db8e147fae440b13cf77de82e38afcp@chrX:13789306..13789315, -
2.02e-57FFCP PHASE1:Hg19::chr7:130745294..130745303,-#_83db8e147fae440b13cf77de82e38afcp@chr7:130745294..130745303, -
2.02e-57FFCP PHASE1:Hg19::chrX:13789306..13789315,-#_83db8e147fae440b13cf77de82e38afcp@chrX:13789306..13789315, -
2.69e-57FFCP PHASE1:Hg19::chr19:49932793..49932820,-#_951d68e2eaa9e6fc3dda91da630755a8p@chr19:49932793..49932820, -
2.69e-57FFCP PHASE2:Hg19::chr19:49932793..49932820,-#_951d68e2eaa9e6fc3dda91da630755a8p@chr19:49932793..49932820, -
3.58e-57FFCP PHASE1:Hg19::chr5:111964224..111964247,+#_98ea790a5e67effcc2bca4f39ab1b74cp1@ENST00000507565
3.58e-57FFCP PHASE2:Hg19::chr2:79601075..79601083,+#_98ea790a5e67effcc2bca4f39ab1b74cp@chr2:79601075..79601083, +
3.58e-57FFCP PHASE1:Hg19::chr2:79601075..79601083,+#_98ea790a5e67effcc2bca4f39ab1b74cp@chr2:79601075..79601083, +
3.58e-57FFCP PHASE2:Hg19::chr5:111964224..111964247,+#_98ea790a5e67effcc2bca4f39ab1b74cp1@ENST00000507565
4.77e-57FFCP PHASE1:Hg19::chr7:22158177..22158186,-#_1f88ab169ec549dbbb21633c1b978c31p@chr7:22158177..22158186, -
4.77e-57FFCP PHASE2:Hg19::chr7:22158177..22158186,-#_1f88ab169ec549dbbb21633c1b978c31p@chr7:22158177..22158186, -
6.36e-57FFCP PHASE2:Hg19::chr8:42981738..42981749,+#_a20bf908089fb61b486941f77c96bdf3p4@AK056481
6.36e-57FFCP PHASE1:Hg19::chr8:42981738..42981749,+#_a20bf908089fb61b486941f77c96bdf3p4@AK056481
8.82e-51FFCP PHASE1:Hg19::chr5:82155710..82155724,-#_c7f88457e707ab96a24bae0b057e9923p@chr5:82155710..82155724, -
8.82e-51FFCP PHASE2:Hg19::chr5:82155710..82155724,-#_c7f88457e707ab96a24bae0b057e9923p@chr5:82155710..82155724, -
1.14e-50FFCP PHASE2:Hg19::chr17:27901500..27901511,-#_23a2c7c173793310fb1b6a2dfa8d8108p25@GIT1
1.14e-50FFCP PHASE1:Hg19::chr17:27901500..27901511,-#_23a2c7c173793310fb1b6a2dfa8d8108p25@GIT1
1.14e-50FFCP PHASE2:Hg19::chr15:43814895..43814906,+#_23a2c7c173793310fb1b6a2dfa8d8108p35@MAP1A
1.14e-50FFCP PHASE1:Hg19::chr15:43814895..43814906,+#_23a2c7c173793310fb1b6a2dfa8d8108p35@MAP1A
2.42e-50FFCP PHASE2:Hg19::chr13:101712292..101712306,-#_2379b853c6db69e84caecea53241f7d4p@chr13:101712292..101712306, -
2.42e-50FFCP PHASE1:Hg19::chr13:101712292..101712306,-#_2379b853c6db69e84caecea53241f7d4p@chr13:101712292..101712306, -
2.74e-50FFCP PHASE2:Hg19::chr19:49932741..49932746,-#_121187e8ba74e263d90092c6272909c5p@chr19:49932741..49932746, -
2.74e-50FFCP PHASE1:Hg19::chr3:131756644..131756651,-#_121187e8ba74e263d90092c6272909c5p13@CPNE4
2.74e-50FFCP PHASE2:Hg19::chr16:7240507..7240509,+#_121187e8ba74e263d90092c6272909c5p@chr16:7240507..7240509, +
2.74e-50FFCP PHASE1:Hg19::chr16:7240507..7240509,+#_121187e8ba74e263d90092c6272909c5p@chr16:7240507..7240509, +
2.74e-50FFCP PHASE2:Hg19::chr3:131756632..131756637,-#_121187e8ba74e263d90092c6272909c5p11@CPNE4
2.74e-50FFCP PHASE1:Hg19::chr19:49932741..49932746,-#_121187e8ba74e263d90092c6272909c5p@chr19:49932741..49932746, -
2.74e-50FFCP PHASE2:Hg19::chr3:131756644..131756651,-#_121187e8ba74e263d90092c6272909c5p13@CPNE4
2.74e-50FFCP PHASE1:Hg19::chr3:131756632..131756637,-#_121187e8ba74e263d90092c6272909c5p11@CPNE4
3.11e-50FFCP PHASE1:Hg19::chr11:123502588..123502633,-#_4ffbdb78e14e2894505f5289149ee4dep16@SCN3B
3.11e-50FFCP PHASE2:Hg19::chr11:123502588..123502633,-#_4ffbdb78e14e2894505f5289149ee4dep16@SCN3B
4.0e-50FFCP PHASE2:Hg19::chr3:58552313..58552322,-#_d0b345baa3ac7ec89a0eaa3d95cf1620p@chr3:58552313..58552322, -
4.0e-50FFCP PHASE1:Hg19::chr3:58552313..58552322,-#_d0b345baa3ac7ec89a0eaa3d95cf1620p@chr3:58552313..58552322, -
4.52e-50FFCP PHASE2:Hg19::chr1:99772065..99772074,+#_fda7672f0d468f3ea8d4bfe59914c1a6p13@LPPR4
4.52e-50FFCP PHASE1:Hg19::chr8:26365361..26365372,-#_fda7672f0d468f3ea8d4bfe59914c1a6p5@PNMA2
4.52e-50FFCP PHASE2:Hg19::chr18:24433388..24433397,-#_fda7672f0d468f3ea8d4bfe59914c1a6p20@AQP4
4.52e-50FFCP PHASE1:Hg19::chr21:27651095..27651104,+#_fda7672f0d468f3ea8d4bfe59914c1a6p@chr21:27651095..27651104, +
4.52e-50FFCP PHASE2:Hg19::chr21:27651095..27651104,+#_fda7672f0d468f3ea8d4bfe59914c1a6p@chr21:27651095..27651104, +
4.52e-50FFCP PHASE2:Hg19::chr8:81570615..81570619,-#_fda7672f0d468f3ea8d4bfe59914c1a6p@chr8:81570615..81570619, -
4.52e-50FFCP PHASE2:Hg19::chrX:152095682..152095708,-#_fda7672f0d468f3ea8d4bfe59914c1a6p@chrX:152095682..152095708, -
4.52e-50FFCP PHASE1:Hg19::chr20:44330800..44330802,-#_fda7672f0d468f3ea8d4bfe59914c1a6p@chr20:44330800..44330802, -
4.52e-50FFCP PHASE1:Hg19::chr19:4772190..4772197,+#_fda7672f0d468f3ea8d4bfe59914c1a6p@chr19:4772190..4772197, +
4.52e-50FFCP PHASE1:Hg19::chrX:152095682..152095708,-#_fda7672f0d468f3ea8d4bfe59914c1a6p@chrX:152095682..152095708, -
4.52e-50FFCP PHASE1:Hg19::chr8:81570615..81570619,-#_fda7672f0d468f3ea8d4bfe59914c1a6p@chr8:81570615..81570619, -
4.52e-50FFCP PHASE2:Hg19::chr7:98460933..98460941,-#_fda7672f0d468f3ea8d4bfe59914c1a6p19@TMEM130
4.52e-50FFCP PHASE1:Hg19::chr21:27650939..27650945,-#_fda7672f0d468f3ea8d4bfe59914c1a6p@chr21:27650939..27650945, -
4.52e-50FFCP PHASE1:Hg19::chr18:24433388..24433397,-#_fda7672f0d468f3ea8d4bfe59914c1a6p20@AQP4
4.52e-50FFCP PHASE2:Hg19::chr20:44330800..44330802,-#_fda7672f0d468f3ea8d4bfe59914c1a6p@chr20:44330800..44330802, -
4.52e-50FFCP PHASE2:Hg19::chr8:26365361..26365372,-#_fda7672f0d468f3ea8d4bfe59914c1a6p5@PNMA2
4.52e-50FFCP PHASE2:Hg19::chr21:27650939..27650945,-#_fda7672f0d468f3ea8d4bfe59914c1a6p@chr21:27650939..27650945, -
4.52e-50FFCP PHASE2:Hg19::chr19:4772190..4772197,+#_fda7672f0d468f3ea8d4bfe59914c1a6p@chr19:4772190..4772197, +
4.52e-50FFCP PHASE1:Hg19::chr1:99772065..99772074,+#_fda7672f0d468f3ea8d4bfe59914c1a6p13@LPPR4
4.52e-50FFCP PHASE1:Hg19::chr7:98460933..98460941,-#_fda7672f0d468f3ea8d4bfe59914c1a6p19@TMEM130
5.15e-50FFCP PHASE1:Hg19::chr14:24037817..24037858,-#_9c9249f83e696a92dd28917bb72d6ad8p@chr14:24037817..24037858, -
5.15e-50FFCP PHASE2:Hg19::chr14:24037817..24037858,-#_9c9249f83e696a92dd28917bb72d6ad8p@chr14:24037817..24037858, -
6.61e-50FFCP PHASE1:Hg19::chr12:41234328..41234338,+#_a4d5d100f791dea20da41748bfc59b42p@chr12:41234328..41234338, +
6.61e-50FFCP PHASE2:Hg19::chr12:41234328..41234338,+#_a4d5d100f791dea20da41748bfc59b42p@chr12:41234328..41234338, +
3.19e-45FFCP PHASE1:Hg19::chr12:79843202..79843213,+#_62eba1cb83955d5f16c8572d5bd9f17ep@chr12:79843202..79843213, +
3.19e-45FFCP PHASE1:Hg19::chr19:3294647..3294651,+#_62eba1cb83955d5f16c8572d5bd9f17ep@chr19:3294647..3294651, +
3.19e-45FFCP PHASE2:Hg19::chr19:3294647..3294651,+#_62eba1cb83955d5f16c8572d5bd9f17ep@chr19:3294647..3294651, +
3.19e-45FFCP PHASE2:Hg19::chr12:79843202..79843213,+#_62eba1cb83955d5f16c8572d5bd9f17ep@chr12:79843202..79843213, +
6.26e-45FFCP PHASE1:Hg19::chr9:87426979..87426990,+#_fd0d405f367b9c1cc72453223687d885p54@NTRK2
6.26e-45FFCP PHASE2:Hg19::chr5:63258078..63258088,-#_fd0d405f367b9c1cc72453223687d885p6@HTR1A
6.26e-45FFCP PHASE2:Hg19::chr8:27316567..27316576,+#_fd0d405f367b9c1cc72453223687d885p@chr8:27316567..27316576, +
6.26e-45FFCP PHASE1:Hg19::chr5:63258078..63258088,-#_fd0d405f367b9c1cc72453223687d885p6@HTR1A
6.26e-45FFCP PHASE1:Hg19::chr8:27316567..27316576,+#_fd0d405f367b9c1cc72453223687d885p@chr8:27316567..27316576, +
6.26e-45FFCP PHASE2:Hg19::chr9:87426979..87426990,+#_fd0d405f367b9c1cc72453223687d885p54@NTRK2
7.83e-45FFCP PHASE1:Hg19::chr5:63258105..63258124,-#_192db69e201db54ab0a08983aa7ee748p2@HTR1A
7.83e-45FFCP PHASE1:Hg19::chr2:101965038..101965076,-#_192db69e201db54ab0a08983aa7ee748p@chr2:101965038..101965076, -
7.83e-45FFCP PHASE2:Hg19::chr2:101965038..101965076,-#_192db69e201db54ab0a08983aa7ee748p@chr2:101965038..101965076, -
7.83e-45FFCP PHASE1:Hg19::chr1:160112787..160112798,+#_192db69e201db54ab0a08983aa7ee748p12@ATP1A2
7.83e-45FFCP PHASE2:Hg19::chr1:160112787..160112798,+#_192db69e201db54ab0a08983aa7ee748p12@ATP1A2
7.83e-45FFCP PHASE2:Hg19::chr5:63258105..63258124,-#_192db69e201db54ab0a08983aa7ee748p2@HTR1A

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002600&oldid=3277481"