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|namespace=
|namespace=
|def="body cavity of the human body (and animal bodies) that holds the bulk of the viscera. It is located below (or inferior to) the thoracic cavity, and above the pelvic cavity. It is a part of the abdominopelvic cavity. Organs of the abdominal cavity include the stomach, liver, gallbladder, spleen, pancreas, small intestine, kidneys, and large intestine. The abdominal cavity is lined with a protective membrane termed the peritoneum. The kidneys are located in the abdominal cavity behind the peritoneum, in the retroperitoneum. The viscera are also covered, in the front, with a layer of peritoneum called the greater omentum (or omental apron)." [Wikipedia:Abdominal_cavity]
|def="body cavity of the human body (and animal bodies) that holds the bulk of the viscera. It is located below (or inferior to) the thoracic cavity, and above the pelvic cavity. It is a part of the abdominopelvic cavity. Organs of the abdominal cavity include the stomach, liver, gallbladder, spleen, pancreas, small intestine, kidneys, and large intestine. The abdominal cavity is lined with a protective membrane termed the peritoneum. The kidneys are located in the abdominal cavity behind the peritoneum, in the retroperitoneum. The viscera are also covered, in the front, with a layer of peritoneum called the greater omentum (or omental apron)." [Wikipedia:Abdominal_cavity]
|xref=EFO:0000213;;FMA:12266;;GAID:17;;galen:AbdominalCavity;;http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png;;MESH:A.01.047.025;;ncithesaurus:Abdominal_Cavity;;OpenCyc:Mx4rvZR1TJwpEbGdrcN5Y29ycA;;SCTID:361294009
|xref=EFO:0000213;;FMA:12266;;GAID:17;;galen:AbdominalCavity;;http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png;;MESH:A.01.047.025;;ncithesaurus:Abdominal_Cavity;;OpenCyc:Mx4rvZR1TJwpEbGdrcN5Y29ycA;;SCTID:361294009
|is_a=UBERON:0002323
|is_a=UBERON:0002323
|synonym="cavitas abdominis" RELATED [GAID:17];;"cavity of abdominal compartment" EXACT [FMA:12266];;"cavity of compartment of abdomen" EXACT [FMA:12266];;"space of abdominal compartment" EXACT [FMA:12266]
|synonym="cavitas abdominis" RELATED [GAID:17];;"cavitas abdominis" RELATED LATIN [Wikipedia:Abdominal_cavity];;"cavity of abdominal compartment" EXACT [FMA:12266];;"cavity of compartment of abdomen" EXACT [FMA:12266];;"space of abdominal compartment" EXACT [FMA:12266]
|comment=
|comment=
|alt_id=
|alt_id=
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|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
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|part_of=UBERON:0000916
|part_of=UBERON:0000916
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
}}
}}

Latest revision as of 13:34, 27 June 2012

Name:abdominal cavity
Definition:"body cavity of the human body (and animal bodies) that holds the bulk of the viscera. It is located below (or inferior to) the thoracic cavity, and above the pelvic cavity. It is a part of the abdominopelvic cavity. Organs of the abdominal cavity include the stomach, liver, gallbladder, spleen, pancreas, small intestine, kidneys, and large intestine. The abdominal cavity is lined with a protective membrane termed the peritoneum. The kidneys are located in the abdominal cavity behind the peritoneum, in the retroperitoneum. The viscera are also covered, in the front, with a layer of peritoneum called the greater omentum (or omental apron)." [Wikipedia:Abdominal_cavity]
Xrefs:
links:

EFO:0000213
FMA:12266
GAID:17
galen:AbdominalCavity
[1]
[ 200px-Scheme_body_cavities-en.svg.png 200px-Scheme_body_cavities-en.svg.png]
MESH:A.01.047.025
ncithesaurus:Abdominal_Cavity
OpenCyc:Mx4rvZR1TJwpEbGdrcN5Y29ycA

SCTID:361294009
Synonyms: "cavitas abdominis" RELATED [GAID:17]
"cavitas abdominis" RELATED LATIN [Wikipedia:Abdominal_cavity]
"cavity of abdominal compartment" EXACT [FMA:12266]
"cavity of compartment of abdomen" EXACT [FMA:12266]
"space of abdominal compartment" EXACT [FMA:12266]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002323(body cavity)
part_of:UBERON:0000916(abdomen)



Children NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003684 (abdominal cavity), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.41e-163FFCP PHASE2:Hg19::chr18:20122740..20122747,+#_bca9e4b34513d2dd0cbb3d94e49c888ep@chr18:20122740..20122747, +
5.41e-163FFCP PHASE1:Hg19::chr18:20122740..20122747,+#_bca9e4b34513d2dd0cbb3d94e49c888ep@chr18:20122740..20122747, +
1.44e-101FFCP PHASE2:Hg19::chr15:39087815..39087824,-#_83bfdc5b0e3613704276f505f816fd1bp@chr15:39087815..39087824, -
1.44e-101FFCP PHASE1:Hg19::chr15:39087815..39087824,-#_83bfdc5b0e3613704276f505f816fd1bp@chr15:39087815..39087824, -
1.83e-98FFCP PHASE2:Hg19::chr7:73484112..73484119,+#_7d98052ceca91ac6b68aaa8233220ffbp43@ELN
1.83e-98FFCP PHASE1:Hg19::chr7:73484112..73484119,+#_7d98052ceca91ac6b68aaa8233220ffbp43@ELN
8.19e-75FFCP PHASE2:Hg19::chr15:81225699..81225710,+#_c93a70e8648c3c4c1c938edd400a5159p26@KIAA1199
8.19e-75FFCP PHASE1:Hg19::chr4:112437251..112437278,+#_c93a70e8648c3c4c1c938edd400a5159p@chr4:112437251..112437278, +
8.19e-75FFCP PHASE1:Hg19::chr15:81225699..81225710,+#_c93a70e8648c3c4c1c938edd400a5159p26@KIAA1199
8.19e-75FFCP PHASE2:Hg19::chr4:112437251..112437278,+#_c93a70e8648c3c4c1c938edd400a5159p@chr4:112437251..112437278, +
1.92e-69FFCP PHASE1:Hg19::chr10:105428550..105428555,-#_4c9e3bd51f4da65f15caf273215c4d45p25@SH3PXD2A
1.92e-69FFCP PHASE2:Hg19::chr10:105428550..105428555,-#_4c9e3bd51f4da65f15caf273215c4d45p25@SH3PXD2A
1.46e-68FFCP PHASE2:Hg19::chr15:81242191..81242201,+#_e16bcc54aa8bc641932c52fae597ab1cp19@KIAA1199
1.46e-68FFCP PHASE1:Hg19::chr15:81242191..81242201,+#_e16bcc54aa8bc641932c52fae597ab1cp19@KIAA1199
2.94e-68FFCP PHASE2:Hg19::chr15:26342114..26342124,+#_24efa67a68a21ce6098f9955bd98cf5bp@chr15:26342114..26342124, +
2.94e-68FFCP PHASE1:Hg19::chr15:26342114..26342124,+#_24efa67a68a21ce6098f9955bd98cf5bp@chr15:26342114..26342124, +
1.47e-66FFCP PHASE1:Hg19::chr7:40251315..40251325,-#_aa694fee3ec669a505ecf7c3a065d04cp@chr7:40251315..40251325, -
1.47e-66FFCP PHASE2:Hg19::chr7:40251315..40251325,-#_aa694fee3ec669a505ecf7c3a065d04cp@chr7:40251315..40251325, -
5.13e-66FFCP PHASE1:Hg19::chr6:30811934..30811939,-#_25f3907f411531d69ecd3a1cf166917fp@chr6:30811934..30811939, -
5.13e-66FFCP PHASE2:Hg19::chr6:30811934..30811939,-#_25f3907f411531d69ecd3a1cf166917fp@chr6:30811934..30811939, -
1.95e-63FFCP PHASE2:Hg19::chr19:18718144..18718158,+#_ec697672d36330de4ce239697189e5f0p@chr19:18718144..18718158, +
1.95e-63FFCP PHASE1:Hg19::chr19:18718144..18718158,+#_ec697672d36330de4ce239697189e5f0p@chr19:18718144..18718158, +
2.22e-63FFCP PHASE1:Hg19::chr14:23072291..23072333,+#_9476da4d10ade587d253efecc2774572p@chr14:23072291..23072333, +
2.22e-63FFCP PHASE2:Hg19::chr14:23072291..23072333,+#_9476da4d10ade587d253efecc2774572p@chr14:23072291..23072333, +
6.07e-62FFCP PHASE1:Hg19::chr19:18900805..18900820,-#_ab8d03c5e57a6f947fafa00da6053b97p@chr19:18900805..18900820, -
6.07e-62FFCP PHASE2:Hg19::chr19:18900805..18900820,-#_ab8d03c5e57a6f947fafa00da6053b97p@chr19:18900805..18900820, -
6.79e-60FFCP PHASE2:Hg19::chr12:8814772..8814786,-#_1eafe34962277289afa389bd12c2f134p13@MFAP5
6.79e-60FFCP PHASE1:Hg19::chr12:8814772..8814786,-#_1eafe34962277289afa389bd12c2f134p13@MFAP5
1.49e-59FFCP PHASE1:Hg19::chr12:15035058..15035069,+#_d2553cc69c2ab576ace47cad16173a88p@chr12:15035058..15035069, +
1.49e-59FFCP PHASE2:Hg19::chr12:15035058..15035069,+#_d2553cc69c2ab576ace47cad16173a88p@chr12:15035058..15035069, +
1.84e-59FFCP PHASE2:Hg19::chr9:93101022..93101028,+#_6329db7a30d714d8c1d85b6e7809f69dp@chr9:93101022..93101028, +
1.84e-59FFCP PHASE1:Hg19::chr9:93101022..93101028,+#_6329db7a30d714d8c1d85b6e7809f69dp@chr9:93101022..93101028, +
2.98e-59FFCP PHASE2:Hg19::chr2:191745264..191745275,+#_fd16acdd21960aadaf6243f10182de1cp21@GLS
2.98e-59FFCP PHASE1:Hg19::chr2:191745264..191745275,+#_fd16acdd21960aadaf6243f10182de1cp21@GLS
1.01e-58FFCP PHASE2:Hg19::chr4:112437339..112437350,+#_717478bc56054ec9aed1f9a29d8385bbp@chr4:112437339..112437350, +
1.01e-58FFCP PHASE1:Hg19::chr4:112437339..112437350,+#_717478bc56054ec9aed1f9a29d8385bbp@chr4:112437339..112437350, +
1.11e-58FFCP PHASE1:Hg19::chr9:103340443..103340454,+#_aea8b969f121dace467c19a5e295cf14p4@MURC
1.11e-58FFCP PHASE2:Hg19::chr9:103340443..103340454,+#_aea8b969f121dace467c19a5e295cf14p4@MURC
2.09e-58FFCP PHASE2:Hg19::chr19:18900031..18900054,+#_bf5e0e6f0764af18963136298fb71b88p@chr19:18900031..18900054, +
2.09e-58FFCP PHASE1:Hg19::chr19:18900031..18900054,+#_bf5e0e6f0764af18963136298fb71b88p@chr19:18900031..18900054, +
2.12e-58FFCP PHASE1:Hg19::chr8:80414650..80414654,+#_d1081e9dc375239fdf40542ecfc3feccp@chr8:80414650..80414654, +
2.12e-58FFCP PHASE2:Hg19::chr8:80414650..80414654,+#_d1081e9dc375239fdf40542ecfc3feccp@chr8:80414650..80414654, +
4.66e-58FFCP PHASE1:Hg19::chr19:18896512..18896527,-#_4ad937f86419595063c33e20967db7cep@chr19:18896512..18896527, -
4.66e-58FFCP PHASE2:Hg19::chr19:18896512..18896527,-#_4ad937f86419595063c33e20967db7cep@chr19:18896512..18896527, -
1.4e-55FFCP PHASE2:Hg19::chr19:18896642..18896656,-#_e945755f1d08208b641e50cc6a9b139ap@chr19:18896642..18896656, -
1.4e-55FFCP PHASE1:Hg19::chr19:18896642..18896656,-#_e945755f1d08208b641e50cc6a9b139ap@chr19:18896642..18896656, -
7.68e-54FFCP PHASE2:Hg19::chr19:18900836..18900848,-#_7fe204f6143ba31e1e97be0dc355b798p@chr19:18900836..18900848, -
7.68e-54FFCP PHASE1:Hg19::chr19:18900836..18900848,-#_7fe204f6143ba31e1e97be0dc355b798p@chr19:18900836..18900848, -
6.91e-53FFCP PHASE1:Hg19::chr11:103720186..103720199,-#_58032e06f4cceb3b8a39b48bc0bf4eedp@chr11:103720186..103720199, -
6.91e-53FFCP PHASE2:Hg19::chr11:103720186..103720199,-#_58032e06f4cceb3b8a39b48bc0bf4eedp@chr11:103720186..103720199, -
9.03e-53FFCP PHASE1:Hg19::chr6:169622388..169622400,-#_c8bf5006d183ea54bb83c9de5d2832a0p@chr6:169622388..169622400, -
9.03e-53FFCP PHASE2:Hg19::chr6:169622388..169622400,-#_c8bf5006d183ea54bb83c9de5d2832a0p@chr6:169622388..169622400, -
5.4e-52FFCP PHASE1:Hg19::chr10:105428632..105428639,-#_5502b58976d56abf6ae0835856bf0373p26@SH3PXD2A
5.4e-52FFCP PHASE2:Hg19::chr10:105428632..105428639,-#_5502b58976d56abf6ae0835856bf0373p26@SH3PXD2A
7.41e-52FFCP PHASE2:Hg19::chr15:81214436..81214445,+#_09c8a889efa683504006e38aeefc4cafp13@KIAA1199
7.41e-52FFCP PHASE1:Hg19::chr15:81214436..81214445,+#_09c8a889efa683504006e38aeefc4cafp13@KIAA1199
2.22e-51FFCP PHASE1:Hg19::chr6:75831042..75831053,-#_100b936814e01c624090612df41795e3p@chr6:75831042..75831053, -
2.22e-51FFCP PHASE2:Hg19::chr6:75831042..75831053,-#_100b936814e01c624090612df41795e3p@chr6:75831042..75831053, -
3.75e-51FFCP PHASE2:Hg19::chr19:18893717..18893745,+#_a83672f965203d9ac36216cb42aebac1p@chr19:18893717..18893745, +
3.75e-51FFCP PHASE1:Hg19::chr19:18893717..18893745,+#_a83672f965203d9ac36216cb42aebac1p@chr19:18893717..18893745, +
4.87e-51FFCP PHASE1:Hg19::chr19:18896862..18896874,-#_d0f3e543d07eac2ebc943485602aae78p@chr19:18896862..18896874, -
4.87e-51FFCP PHASE2:Hg19::chr19:18896862..18896874,-#_d0f3e543d07eac2ebc943485602aae78p@chr19:18896862..18896874, -
6.9e-51FFCP PHASE2:Hg19::chr19:18897375..18897390,-#_db7077b01569cbddfea85404f4652ea6p4@COMP
6.9e-51FFCP PHASE1:Hg19::chr19:18897375..18897390,-#_db7077b01569cbddfea85404f4652ea6p4@COMP
1.05e-49FFCP PHASE1:Hg19::chr5:150138790..150138796,-#_723e74a6d781f3c6d528d9530f8d0aacp18@DCTN4
1.05e-49FFCP PHASE2:Hg19::chr5:150138790..150138796,-#_723e74a6d781f3c6d528d9530f8d0aacp18@DCTN4
1.24e-49FFCP PHASE2:Hg19::chr15:83330983..83330997,-#_4322218d936b678ecae90338a89237b8p10@AP3B2
1.24e-49FFCP PHASE1:Hg19::chr15:83330983..83330997,-#_4322218d936b678ecae90338a89237b8p10@AP3B2
1.73e-49FFCP PHASE2:Hg19::chr11:111896671..111896691,+#_bd091bbdbbb8ea0dee3a202ff78e868ep@chr11:111896671..111896691, +
1.73e-49FFCP PHASE1:Hg19::chr11:111896671..111896691,+#_bd091bbdbbb8ea0dee3a202ff78e868ep@chr11:111896671..111896691, +
2.39e-49FFCP PHASE1:Hg19::chr12:8814756..8814767,-#_5f05a34bf586b810e09e2331c67b8d87p19@MFAP5
2.39e-49FFCP PHASE2:Hg19::chr12:8814756..8814767,-#_5f05a34bf586b810e09e2331c67b8d87p19@MFAP5
4.72e-49FFCP PHASE2:Hg19::chr19:18899276..18899289,-#_2ccf9a8bde05df8337bfa62c1e5b0b41p@chr19:18899276..18899289, -
4.72e-49FFCP PHASE1:Hg19::chr19:18899276..18899289,-#_2ccf9a8bde05df8337bfa62c1e5b0b41p@chr19:18899276..18899289, -
6.44e-49FFCP PHASE1:Hg19::chr13:102104738..102104747,+#_9794bb613158b6adf8d0017ce7f3da02p11@ITGBL1
6.44e-49FFCP PHASE2:Hg19::chr13:102104738..102104747,+#_9794bb613158b6adf8d0017ce7f3da02p11@ITGBL1
1.14e-48FFCP PHASE2:Hg19::chr4:88928893..88928902,+#_6e654cea6a79f81ba24b32c9f6f25b55p4@PKD2
1.14e-48FFCP PHASE1:Hg19::chr4:88928893..88928902,+#_6e654cea6a79f81ba24b32c9f6f25b55p4@PKD2
1.58e-48FFCP PHASE2:Hg19::chr6:75843119..75843139,-#_fc6656c1b440fc58124ac4cf61c17948p@chr6:75843119..75843139, -
1.58e-48FFCP PHASE1:Hg19::chr6:75843119..75843139,-#_fc6656c1b440fc58124ac4cf61c17948p@chr6:75843119..75843139, -
1.77e-48FFCP PHASE2:Hg19::chr8:74464406..74464424,-#_3cc536b46bb25120c3ad69b0edbbc27ep4@STAU2
1.77e-48FFCP PHASE1:Hg19::chr8:74464406..74464424,-#_3cc536b46bb25120c3ad69b0edbbc27ep4@STAU2
1.99e-48FFCP PHASE2:Hg19::chr19:18893611..18893635,-#_8af4ef6c2d74b273bd8d514f95cd5d35p1@AK094919
1.99e-48FFCP PHASE1:Hg19::chr19:18893611..18893635,-#_8af4ef6c2d74b273bd8d514f95cd5d35p1@AK094919
2.25e-48FFCP PHASE1:Hg19::chr7:73484184..73484197,+#_30f271f06fb5acd206d431199a38faddp19@ELN
2.25e-48FFCP PHASE2:Hg19::chr7:73484184..73484197,+#_30f271f06fb5acd206d431199a38faddp19@ELN
2.83e-48FFCP PHASE2:Hg19::chr3:141719209..141719215,-#_a09a97392d34c21641053d31c628a9cfp10@TFDP2
2.83e-48FFCP PHASE1:Hg19::chr3:141719209..141719215,-#_a09a97392d34c21641053d31c628a9cfp10@TFDP2
5.81e-48FFCP PHASE1:Hg19::chr3:112321809..112321819,-#_dfee7da6b10fba1f4db0b8fb9e42ed09p@chr3:112321809..112321819, -
5.81e-48FFCP PHASE2:Hg19::chr3:112321809..112321819,-#_dfee7da6b10fba1f4db0b8fb9e42ed09p@chr3:112321809..112321819, -
3.73e-47FFCP PHASE2:Hg19::chr19:18896798..18896823,-#_4140a697420943d92d3c89a89b9b75bfp@chr19:18896798..18896823, -
3.73e-47FFCP PHASE1:Hg19::chr19:18896798..18896823,-#_4140a697420943d92d3c89a89b9b75bfp@chr19:18896798..18896823, -
4.75e-47FFCP PHASE2:Hg19::chr19:18898324..18898353,+#_1ed48b101a08a66636716b188577f2c0p@chr19:18898324..18898353, +
4.75e-47FFCP PHASE1:Hg19::chr19:18898324..18898353,+#_1ed48b101a08a66636716b188577f2c0p@chr19:18898324..18898353, +
7.35e-47FFCP PHASE2:Hg19::chr19:38812519..38812533,-#_f5869a7aacb23a9ac43116888497595bp@chr19:38812519..38812533, -
7.35e-47FFCP PHASE1:Hg19::chr19:38812519..38812533,-#_f5869a7aacb23a9ac43116888497595bp@chr19:38812519..38812533, -
2.79e-46FFCP PHASE1:Hg19::chr7:37947092..37947121,+#_8146b045e5aebeba2cc3938fb045c31ep2@CU691333
2.79e-46FFCP PHASE2:Hg19::chr7:37947092..37947121,+#_8146b045e5aebeba2cc3938fb045c31ep2@CU691333
3.81e-46FFCP PHASE2:Hg19::chr19:18900850..18900868,-#_997bcde084335f0e6362ef8b85763666p@chr19:18900850..18900868, -
3.81e-46FFCP PHASE1:Hg19::chr19:18900850..18900868,-#_997bcde084335f0e6362ef8b85763666p@chr19:18900850..18900868, -

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