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{{f5samples
{{f5samples
|DRA_sample_Accession=sRNA-Seq@SAMD00013697
|DRA_sample_Accession=CAGE@SAMD00006002
|accession_numbers=CAGE;DRX008197;DRR009069;DRZ000494;DRZ001879!sRNA-Seq;DRX012365;DRR013813;DRZ003014;
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00013697
|accession_numbers=CAGE;DRX008197;DRR009069;DRZ000494;DRZ001879;DRZ011844;DRZ013229
|accession_numbers_RNASeq=sRNA-Seq;DRX012365;DRR013813;DRZ003014
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
Line 50: Line 52:
|is_a=EFO:0002091;;FF:0000030;;FF:0000210
|is_a=EFO:0002091;;FF:0000030;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs11999
|library_id=CNhs11999!SRhi10011.GTGAAA
|library_id_phase_based=2:CNhs11999
|library_id_phase_based=2:CNhs11999
|microRNAs=
|microRNAs=
Line 65: Line 67:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10011,,,
|profile_srnaseq=SRhi10011,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 80: Line 82:
|rna_tube_id=118B6
|rna_tube_id=118B6
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10011.GTGAAA
|sample_age=53
|sample_age=53
|sample_category=primary cells
|sample_category=primary cells
Line 103: Line 106:
|top_motifs=CREB1:3.46222564936;PITX1..3:3.30466926124;PAX3,7:3.27961748556;ATF4:3.20484874129;FOXO1,3,4:3.07642937861;ATF5_CREB3:3.00115013965;FOX{D1,D2}:2.98004043043;RFX2..5_RFXANK_RFXAP:2.94416828626;FOXP1:2.83490443307;RUNX1..3:2.72728686831;BPTF:2.62582209069;ZBTB16:2.62422514558;T:2.60401448267;RORA:2.56869680865;TOPORS:2.49724597986;FOXN1:2.41263718984;RFX1:2.21779546141;ELF1,2,4:2.121852489;IKZF2:2.00906684725;PAX2:2.00186258655;NFKB1_REL_RELA:1.95587400613;FOX{F1,F2,J1}:1.85805219767;JUN:1.81964591573;NKX6-1,2:1.80026696918;DMAP1_NCOR{1,2}_SMARC:1.78014497955;ETS1,2:1.68510708528;HMX1:1.62722296133;PAX4:1.47726491444;BREu{core}:1.46733490876;SPI1:1.44345208679;CDX1,2,4:1.36893468384;HIF1A:1.32547077118;TGIF1:1.25074951183;LEF1_TCF7_TCF7L1,2:1.23673934492;NKX2-1,4:1.23339528901;TBX4,5:1.21950202297;PPARG:1.16925211852;ATF2:1.15846324942;ATF6:1.06764279251;IRF1,2:1.06679872744;TLX2:1.01242884689;ZNF384:0.957258485388;FOX{I1,J2}:0.941093945196;SPIB:0.845834526744;EGR1..3:0.785026902992;HOX{A6,A7,B6,B7}:0.635549598996;ELK1,4_GABP{A,B1}:0.626237548579;HBP1_HMGB_SSRP1_UBTF:0.621173936622;AIRE:0.594857484399;RREB1:0.573959955925;GATA6:0.516204664221;PAX6:0.497627420136;CUX2:0.404537991056;SOX2:0.359603700641;MYB:0.332461300799;NANOG{mouse}:0.31919560715;SREBF1,2:0.25285264172;EP300:0.248225736647;HMGA1,2:0.234651126365;TFDP1:0.223552320197;SMAD1..7,9:0.211015171362;MAFB:0.188799966434;PDX1:0.172065742278;AHR_ARNT_ARNT2:0.171925644279;FOSL2:0.159540726404;ZEB1:0.158130674372;NFIL3:0.120861502534;SNAI1..3:0.0854797038154;IRF7:0.0799049240556;NKX3-1:0.0775255024293;SOX5:0.0312573851393;FOS_FOS{B,L1}_JUN{B,D}:0.0130737933113;FOXD3:-0.0147449888108;EVI1:-0.0712398640398;MYFfamily:-0.137395572844;NFY{A,B,C}:-0.159469256283;PBX1:-0.161077985572;NFIX:-0.165429565373;NFATC1..3:-0.180662136186;BACH2:-0.208689956262;SPZ1:-0.213424497925;POU2F1..3:-0.236859076398;FOXL1:-0.244720592627;NFE2L1:-0.244742845977;NRF1:-0.256291399274;NR5A1,2:-0.266003700384;MTE{core}:-0.277078072171;POU1F1:-0.279330898843;STAT2,4,6:-0.30593207811;RXRA_VDR{dimer}:-0.315363039612;HES1:-0.320246511364;NFE2:-0.333375837257;MED-1{core}:-0.337289040553;PRRX1,2:-0.344187000458;E2F1..5:-0.387203241355;STAT5{A,B}:-0.4094284229;ZFP161:-0.420175610066;YY1:-0.422628960555;FOXP3:-0.429928591777;AR:-0.437411982643;CEBPA,B_DDIT3:-0.446836749899;HNF4A_NR2F1,2:-0.455116428628;ALX4:-0.468343757762;FOXA2:-0.478941400498;LMO2:-0.484038016232;MTF1:-0.50885060994;MYOD1:-0.511262909498;PAX5:-0.538500276452;SRF:-0.580837146367;TFAP2B:-0.60960474574;PATZ1:-0.61683444164;HOXA9_MEIS1:-0.621092191067;CRX:-0.622017921658;GCM1,2:-0.626642993076;OCT4_SOX2{dimer}:-0.634888230412;HNF1A:-0.688670433913;TAL1_TCF{3,4,12}:-0.704409026986;GLI1..3:-0.740910926525;FOXQ1:-0.7421352698;HLF:-0.7467470233;FOXM1:-0.769855613378;NANOG:-0.771076195871;TFAP4:-0.780918859612;bHLH_family:-0.787177064686;SOX{8,9,10}:-0.78735203254;RBPJ:-0.803864930258;MZF1:-0.804037358829;ZNF423:-0.8119803865;DBP:-0.825318554796;ZBTB6:-0.837569060957;REST:-0.845681309938;NHLH1,2:-0.879237594845;NKX2-2,8:-0.889945525131;NFE2L2:-0.898602522295;MAZ:-0.931844573416;ZNF143:-0.943606204591;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.949173318084;TEF:-0.968291721428;TFAP2{A,C}:-0.969091354548;GATA4:-0.970517497996;ZIC1..3:-1.00329925076;XBP1:-1.04003784052;STAT1,3:-1.05672211978;SOX17:-1.06947395186;NR1H4:-1.08502967794;POU6F1:-1.08842119064;UFEwm:-1.09697376682;MEF2{A,B,C,D}:-1.11033906565;SP1:-1.14288897597;TFCP2:-1.1477525823;HIC1:-1.18495223891;POU3F1..4:-1.21502088528;ZNF148:-1.24299938218;HAND1,2:-1.27431375773;GFI1:-1.32898156763;CDC5L:-1.36742463323;ONECUT1,2:-1.37038072576;LHX3,4:-1.39625108368;XCPE1{core}:-1.4141529815;MYBL2:-1.42625793415;HOX{A5,B5}:-1.43381301263;ARID5B:-1.4541462114;TP53:-1.46927264351;HSF1,2:-1.47456152122;ALX1:-1.47495942817;GFI1B:-1.53864664545;EN1,2:-1.54167449729;RXR{A,B,G}:-1.55916436564;PAX8:-1.56789393649;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.57952637725;TBP:-1.59351012169;ZNF238:-1.60232684837;NR6A1:-1.65675107175;GTF2A1,2:-1.66088379805;GTF2I:-1.73196438948;POU5F1:-1.73400545439;TLX1..3_NFIC{dimer}:-1.76759514399;VSX1,2:-1.78340566456;NKX2-3_NKX2-5:-1.78870365568;GZF1:-1.822157066;HOX{A4,D4}:-1.82949154843;TEAD1:-1.85916374604;PRDM1:-1.99397359301;ESRRA:-2.05977457552;ADNP_IRX_SIX_ZHX:-2.13773944033;KLF4:-2.20112395912;ESR1:-2.33210553668;EBF1:-2.34635841911;PAX1,9:-2.41887920264;NKX3-2:-2.57395824644;IKZF1:-2.67475814541;NR3C1:-2.96335982939
|top_motifs=CREB1:3.46222564936;PITX1..3:3.30466926124;PAX3,7:3.27961748556;ATF4:3.20484874129;FOXO1,3,4:3.07642937861;ATF5_CREB3:3.00115013965;FOX{D1,D2}:2.98004043043;RFX2..5_RFXANK_RFXAP:2.94416828626;FOXP1:2.83490443307;RUNX1..3:2.72728686831;BPTF:2.62582209069;ZBTB16:2.62422514558;T:2.60401448267;RORA:2.56869680865;TOPORS:2.49724597986;FOXN1:2.41263718984;RFX1:2.21779546141;ELF1,2,4:2.121852489;IKZF2:2.00906684725;PAX2:2.00186258655;NFKB1_REL_RELA:1.95587400613;FOX{F1,F2,J1}:1.85805219767;JUN:1.81964591573;NKX6-1,2:1.80026696918;DMAP1_NCOR{1,2}_SMARC:1.78014497955;ETS1,2:1.68510708528;HMX1:1.62722296133;PAX4:1.47726491444;BREu{core}:1.46733490876;SPI1:1.44345208679;CDX1,2,4:1.36893468384;HIF1A:1.32547077118;TGIF1:1.25074951183;LEF1_TCF7_TCF7L1,2:1.23673934492;NKX2-1,4:1.23339528901;TBX4,5:1.21950202297;PPARG:1.16925211852;ATF2:1.15846324942;ATF6:1.06764279251;IRF1,2:1.06679872744;TLX2:1.01242884689;ZNF384:0.957258485388;FOX{I1,J2}:0.941093945196;SPIB:0.845834526744;EGR1..3:0.785026902992;HOX{A6,A7,B6,B7}:0.635549598996;ELK1,4_GABP{A,B1}:0.626237548579;HBP1_HMGB_SSRP1_UBTF:0.621173936622;AIRE:0.594857484399;RREB1:0.573959955925;GATA6:0.516204664221;PAX6:0.497627420136;CUX2:0.404537991056;SOX2:0.359603700641;MYB:0.332461300799;NANOG{mouse}:0.31919560715;SREBF1,2:0.25285264172;EP300:0.248225736647;HMGA1,2:0.234651126365;TFDP1:0.223552320197;SMAD1..7,9:0.211015171362;MAFB:0.188799966434;PDX1:0.172065742278;AHR_ARNT_ARNT2:0.171925644279;FOSL2:0.159540726404;ZEB1:0.158130674372;NFIL3:0.120861502534;SNAI1..3:0.0854797038154;IRF7:0.0799049240556;NKX3-1:0.0775255024293;SOX5:0.0312573851393;FOS_FOS{B,L1}_JUN{B,D}:0.0130737933113;FOXD3:-0.0147449888108;EVI1:-0.0712398640398;MYFfamily:-0.137395572844;NFY{A,B,C}:-0.159469256283;PBX1:-0.161077985572;NFIX:-0.165429565373;NFATC1..3:-0.180662136186;BACH2:-0.208689956262;SPZ1:-0.213424497925;POU2F1..3:-0.236859076398;FOXL1:-0.244720592627;NFE2L1:-0.244742845977;NRF1:-0.256291399274;NR5A1,2:-0.266003700384;MTE{core}:-0.277078072171;POU1F1:-0.279330898843;STAT2,4,6:-0.30593207811;RXRA_VDR{dimer}:-0.315363039612;HES1:-0.320246511364;NFE2:-0.333375837257;MED-1{core}:-0.337289040553;PRRX1,2:-0.344187000458;E2F1..5:-0.387203241355;STAT5{A,B}:-0.4094284229;ZFP161:-0.420175610066;YY1:-0.422628960555;FOXP3:-0.429928591777;AR:-0.437411982643;CEBPA,B_DDIT3:-0.446836749899;HNF4A_NR2F1,2:-0.455116428628;ALX4:-0.468343757762;FOXA2:-0.478941400498;LMO2:-0.484038016232;MTF1:-0.50885060994;MYOD1:-0.511262909498;PAX5:-0.538500276452;SRF:-0.580837146367;TFAP2B:-0.60960474574;PATZ1:-0.61683444164;HOXA9_MEIS1:-0.621092191067;CRX:-0.622017921658;GCM1,2:-0.626642993076;OCT4_SOX2{dimer}:-0.634888230412;HNF1A:-0.688670433913;TAL1_TCF{3,4,12}:-0.704409026986;GLI1..3:-0.740910926525;FOXQ1:-0.7421352698;HLF:-0.7467470233;FOXM1:-0.769855613378;NANOG:-0.771076195871;TFAP4:-0.780918859612;bHLH_family:-0.787177064686;SOX{8,9,10}:-0.78735203254;RBPJ:-0.803864930258;MZF1:-0.804037358829;ZNF423:-0.8119803865;DBP:-0.825318554796;ZBTB6:-0.837569060957;REST:-0.845681309938;NHLH1,2:-0.879237594845;NKX2-2,8:-0.889945525131;NFE2L2:-0.898602522295;MAZ:-0.931844573416;ZNF143:-0.943606204591;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.949173318084;TEF:-0.968291721428;TFAP2{A,C}:-0.969091354548;GATA4:-0.970517497996;ZIC1..3:-1.00329925076;XBP1:-1.04003784052;STAT1,3:-1.05672211978;SOX17:-1.06947395186;NR1H4:-1.08502967794;POU6F1:-1.08842119064;UFEwm:-1.09697376682;MEF2{A,B,C,D}:-1.11033906565;SP1:-1.14288897597;TFCP2:-1.1477525823;HIC1:-1.18495223891;POU3F1..4:-1.21502088528;ZNF148:-1.24299938218;HAND1,2:-1.27431375773;GFI1:-1.32898156763;CDC5L:-1.36742463323;ONECUT1,2:-1.37038072576;LHX3,4:-1.39625108368;XCPE1{core}:-1.4141529815;MYBL2:-1.42625793415;HOX{A5,B5}:-1.43381301263;ARID5B:-1.4541462114;TP53:-1.46927264351;HSF1,2:-1.47456152122;ALX1:-1.47495942817;GFI1B:-1.53864664545;EN1,2:-1.54167449729;RXR{A,B,G}:-1.55916436564;PAX8:-1.56789393649;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.57952637725;TBP:-1.59351012169;ZNF238:-1.60232684837;NR6A1:-1.65675107175;GTF2A1,2:-1.66088379805;GTF2I:-1.73196438948;POU5F1:-1.73400545439;TLX1..3_NFIC{dimer}:-1.76759514399;VSX1,2:-1.78340566456;NKX2-3_NKX2-5:-1.78870365568;GZF1:-1.822157066;HOX{A4,D4}:-1.82949154843;TEAD1:-1.85916374604;PRDM1:-1.99397359301;ESRRA:-2.05977457552;ADNP_IRX_SIX_ZHX:-2.13773944033;KLF4:-2.20112395912;ESR1:-2.33210553668;EBF1:-2.34635841911;PAX1,9:-2.41887920264;NKX3-2:-2.57395824644;IKZF1:-2.67475814541;NR3C1:-2.96335982939
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11383-118B6;search_select_hide=table117:FF:11383-118B6
}}
}}

Latest revision as of 17:56, 4 June 2020

Name:CD8+ T Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs11999,SRhi10011.GTGAAA
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage53 years old adult
sexmale
age53
cell typet cell, CD8+
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberCD8T727
catalog number3H100-26-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00006002
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11999 CAGE DRX008197 DRR009069
Accession ID Hg19

Library idBAMCTSS
CNhs11999 DRZ000494 DRZ001879
Accession ID Hg38

Library idBAMCTSS
CNhs11999 DRZ011844 DRZ013229
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00013697
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10011.GTGAAA sRNA-Seq DRX012365 DRR013813
Accession ID Hg19

Library idBAMCTSS
SRhi10011.GTGAAA DRZ003014


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.157
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0387
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0445
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.261
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.751
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.793
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.11
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.591
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.651
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.0587
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.768
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.559
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.0587
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.607
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0686
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0587
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.11
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.206
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.678
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.773
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.359
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.11
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.557
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.304
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.494
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.622
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.717
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.501
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.00628
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.557
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.198
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.827
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.524
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.726
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.671
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.0846
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.876
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.716
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.591
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.0587
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.591
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11999

Jaspar motifP-value
MA0002.20.00358
MA0003.10.228
MA0004.10.938
MA0006.10.151
MA0007.10.302
MA0009.10.0382
MA0014.10.783
MA0017.10.112
MA0018.22.58713e-9
MA0019.10.449
MA0024.10.829
MA0025.10.199
MA0027.10.788
MA0028.10.0221
MA0029.10.569
MA0030.10.0511
MA0031.14.57072e-5
MA0035.20.328
MA0038.10.0335
MA0039.20.288
MA0040.10.564
MA0041.10.266
MA0042.10.649
MA0043.19.91629e-4
MA0046.10.0531
MA0047.20.607
MA0048.10.589
MA0050.11.09689e-4
MA0051.10.0838
MA0052.10.0227
MA0055.10.962
MA0057.10.189
MA0058.10.837
MA0059.10.684
MA0060.10.203
MA0061.11.64805e-7
MA0062.23.743e-10
MA0065.20.609
MA0066.10.937
MA0067.10.00448
MA0068.10.938
MA0069.10.782
MA0070.10.436
MA0071.10.886
MA0072.10.232
MA0073.10.645
MA0074.10.674
MA0076.10.00699
MA0077.10.146
MA0078.10.963
MA0079.20.833
MA0080.23.02463e-8
MA0081.10.0339
MA0083.10.268
MA0084.10.21
MA0087.10.666
MA0088.10.409
MA0090.13.20762e-4
MA0091.10.189
MA0092.10.718
MA0093.10.829
MA0099.20.0954
MA0100.10.955
MA0101.15.90001e-5
MA0102.20.774
MA0103.10.98
MA0104.20.547
MA0105.18.75803e-6
MA0106.10.0456
MA0107.11.23975e-4
MA0108.21.04148e-4
MA0111.10.487
MA0112.20.0786
MA0113.10.327
MA0114.10.144
MA0115.10.199
MA0116.10.298
MA0117.10.0365
MA0119.10.377
MA0122.10.897
MA0124.10.121
MA0125.10.124
MA0131.10.0387
MA0135.10.099
MA0136.11.79642e-13
MA0137.20.0851
MA0138.20.0356
MA0139.10.997
MA0140.10.725
MA0141.10.0767
MA0142.10.0889
MA0143.10.0689
MA0144.10.224
MA0145.10.0116
MA0146.10.724
MA0147.10.54
MA0148.10.988
MA0149.10.681
MA0150.10.742
MA0152.10.00232
MA0153.10.0886
MA0154.10.512
MA0155.10.146
MA0156.11.16077e-8
MA0157.10.00101
MA0159.10.854
MA0160.10.472
MA0162.10.164
MA0163.10.0379
MA0164.10.675
MA0258.10.725
MA0259.10.522



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11999

Novel motifP-value
10.982
100.0123
1000.695
1010.153
1020.782
1030.127
1040.941
1050.774
1060.47
1070.0196
1080.636
1090.882
110.864
1100.37
1110.578
1120.643
1130.243
1140.855
1150.415
1160.196
1170.00834
1180.505
1190.388
120.727
1200.254
1210.662
1220.768
1237.15152e-7
1240.963
1250.689
1260.976
1270.456
1280.874
1290.274
130.561
1300.202
1310.263
1320.351
1330.998
1340.767
1350.161
1360.924
1370.0897
1380.774
1390.17
140.579
1400.418
1410.919
1420.23
1430.0751
1440.992
1450.522
1460.442
1470.0233
1480.508
1490.141
150.528
1500.806
1510.557
1520.533
1530.508
1540.106
1550.115
1560.859
1570.899
1580.00603
1590.864
160.2
1600.0631
1610.526
1620.0802
1630.622
1640.0967
1650.838
1660.455
1670.124
1680.384
1690.154
170.554
180.403
190.0259
20.132
200.105
210.758
220.144
230.417
240.379
250.245
260.817
270.442
280.428
290.167
30.63
300.0426
310.508
320.00827
330.62
340.299
350.387
360.15
370.634
380.613
390.373
40.956
400.769
410.272
420.384
430.882
440.504
450.0932
460.873
470.747
480.951
490.263
50.874
500.473
510.794
520.736
530.181
540.83
550.729
560.737
570.953
580.243
590.138
60.967
600.768
610.277
620.466
630.798
640.994
650.389
660.47
670.52
680.899
690.975
70.812
700.273
710.427
720.596
730.983
740.428
750.0725
760.0718
770.00251
780.891
790.772
80.291
800.154
810.889
820.631
830.883
840.107
850.917
860.102
870.559
880.986
890.00122
90.488
900.57
910.971
920.749
930.833
940.52
950.305
960.805
970.186
980.55
992.50252e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11999


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

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