FFCP PHASE1:Hg19::chr12:121416455..121416479,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:121416455..121416479,+ to FFCP PHASE1:Hg19::chr12:121416455..121416479,+: NSchange) |
No edit summary |
||
(12 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6927 | |EntrezGene=6927 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11621 | |HGNC=11621 | ||
|TSSclassifier=strong | |||
|UniProt=E0YMK0,E0YMK1,E0YMJ5,F5H3Z5 | |UniProt=E0YMK0,E0YMK1,E0YMJ5,F5H3Z5 | ||
|association_with_transcript=1bp_to_ENST00000535955,ENST00000538626,ENST00000538646,ENST00000541924,ENST00000543427,ENST00000544574_5end | |||
|cluster_id=chr12:121416455..121416479,+ | |||
|coexpression_cluster_id=C3246 | |||
|description=CAGE_peak_2_at_HNF1A_5end | |||
|id=chr12:121416455..121416479,+ | |||
|ontology_enrichment_celltype=CL:0000181!1.37e-23!12;CL:0000417!1.37e-23!12;CL:0000668!1.37e-23!12;CL:0000414!1.37e-23!12;CL:0000412!1.37e-23!12;CL:0000182!1.37e-23!12;CL:0000223!5.88e-14!59;CL:1000507!1.47e-08!12;CL:1000494!1.47e-08!12;CL:0000066!4.40e-08!254;CL:1000497!6.71e-08!18;CL:0002518!6.71e-08!18;CL:0002178!7.17e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000182;2.39e-27;12!CL:0002563;3.01e-10;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.09e-27,12;CL:0000223,1.93e-14,58;CL:0002563,3.30e-10,4 | |||
|ontology_enrichment_development_v019=UBERON:0009497;3.90e-44;13!UBERON:0004161;2.10e-40;11!UBERON:0001041;1.45e-18;30!UBERON:0003104;2.26e-17;31!UBERON:0006242;1.37e-10;1!CL:0000223;2.28e-09;58!UBERON:0006595;8.78e-08;86 | |||
|ontology_enrichment_disease=DOID:299!6.36e-10!25;DOID:3493!8.60e-10!2;DOID:305!1.41e-09!106;DOID:3119!9.82e-08!14;DOID:0050687!6.12e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:7;3.18e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.87e-10,106;DOID:7,3.96e-08,39;DOID:0050687,3.05e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0005172!6.73e-22!55;UBERON:0005173!6.73e-22!55;UBERON:0009497!4.00e-20!25;UBERON:0000015!4.00e-20!25;UBERON:0002423!4.00e-20!25;UBERON:0006235!4.00e-20!25;UBERON:0004161!4.00e-20!25;UBERON:0002417!2.52e-19!61;UBERON:0000916!2.52e-19!61;UBERON:0008835!4.72e-19!22;UBERON:0003894!4.72e-19!22;UBERON:0002107!3.87e-18!19;UBERON:0006925!3.87e-18!19;UBERON:0008836!3.87e-18!19;UBERON:0009854!3.89e-18!23;UBERON:0005409!4.72e-18!35;UBERON:0000160!4.92e-17!27;UBERON:0007499!1.59e-16!25;UBERON:0009856!8.20e-16!26;UBERON:0004921!8.40e-16!129;UBERON:0004185!8.40e-16!129;UBERON:0003929!1.17e-13!54;UBERON:0001007!1.75e-13!155;UBERON:0001555!1.75e-13!155;UBERON:0007026!1.75e-13!155;UBERON:0005177!2.88e-13!107;UBERON:0005057!8.37e-13!26;UBERON:0004119!7.07e-12!169;UBERON:0000925!7.07e-12!169;UBERON:0006595!7.07e-12!169;UBERON:0002365!1.80e-10!31;UBERON:0002330!1.80e-10!31;UBERON:0001052!2.04e-10!4;UBERON:0000949!5.16e-10!45;UBERON:0009569!9.55e-10!113;UBERON:0000059!9.81e-10!11;UBERON:0005911!2.85e-09!82;UBERON:0000077!3.43e-09!130;UBERON:0002368!4.36e-09!35;UBERON:0002113!8.10e-09!27;UBERON:0003918!8.10e-09!27;UBERON:0005095!8.10e-09!27;UBERON:0007687!8.10e-09!27;UBERON:0009773!1.47e-08!12;UBERON:0001231!1.47e-08!12;UBERON:0004810!1.47e-08!12;UBERON:0004907!2.01e-08!5;UBERON:0000466!2.47e-08!126;UBERON:0003104!3.69e-08!238;UBERON:0009142!3.69e-08!238;UBERON:0000481!5.71e-08!347;UBERON:0002108!2.87e-07!14;UBERON:0000489!2.97e-07!32;UBERON:0001041!4.85e-07!98 | |||
|ontology_enrichment_uberon_v019=UBERON:0002423;2.45e-28;25!UBERON:0002107;5.55e-23;19!UBERON:0006925;5.55e-23;19!UBERON:0005409;1.24e-18;22!UBERON:0000160;8.95e-18;17!UBERON:0002108;5.92e-17;4!UBERON:0002365;1.47e-13;31!UBERON:0002330;1.47e-13;31!UBERON:0002368;3.46e-11;33!UBERON:0004921;5.02e-11;33!UBERON:0001242;3.01e-10;4!UBERON:0001262;3.01e-10;4!UBERON:0004786;3.01e-10;4!UBERON:0004808;3.01e-10;4!UBERON:0001277;3.01e-10;4!UBERON:0001007;2.64e-09;81!UBERON:0000949;2.13e-07;43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009497,2.42e-28,25;UBERON:0000015,2.42e-28,25;UBERON:0002423,2.42e-28,25;UBERON:0006235,2.42e-28,25;UBERON:0004161,2.42e-28,25;UBERON:0008835,1.43e-25,22;UBERON:0003894,1.43e-25,22;UBERON:0009854,2.02e-24,23;UBERON:0002107,5.55e-23,19;UBERON:0006925,5.55e-23,19;UBERON:0008836,5.55e-23,19;UBERON:0003929,1.70e-22,54;UBERON:0007499,2.15e-22,25;UBERON:0009856,1.70e-21,26;UBERON:0004921,2.28e-19,118;UBERON:0000160,9.79e-18,17;UBERON:0001007,2.26e-17,145;UBERON:0001555,2.26e-17,145;UBERON:0007026,2.26e-17,145;UBERON:0002108,7.36e-17,4;UBERON:0005911,1.00e-16,82;UBERON:0005409,2.14e-16,25;UBERON:0004119,1.75e-15,160;UBERON:0000925,1.75e-15,160;UBERON:0006595,1.75e-15,160;UBERON:0002365,8.06e-14,31;UBERON:0002330,8.06e-14,31;UBERON:0002368,3.70e-12,35;UBERON:0001242,3.30e-10,4;UBERON:0001262,3.30e-10,4;UBERON:0004786,3.30e-10,4;UBERON:0004808,3.30e-10,4;UBERON:0001277,3.30e-10,4;UBERON:0011216,4.39e-10,223;UBERON:0005172,6.70e-10,54;UBERON:0005173,6.70e-10,54;UBERON:0000949,2.72e-09,45;UBERON:0002530,5.45e-09,59;UBERON:0001041,5.60e-09,87;UBERON:0002417,8.28e-09,60;UBERON:0000916,8.28e-09,60;UBERON:0000490,5.73e-07,148 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0.982827216677626,0.590789906681404,0,8.36321382093172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.04297247958111,0,0,0,0,0,0.902399225814824,0,0.784349769176855,0,0.105551628892876,0,0,0,0,0,0,0.509752546090077,0,0.223874754722178,0,0,0,0,0,0.721287081534056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.26739473068848,0,0,0,0,1.25314822272926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,2.12029607150911,0,0,0.442287822516696,1.83309043480088,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20179492109029,0,2.73771792592801,0,2.4023299700675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.49487848582361,6.69657049611401,7.08776382078031,5.59449413989735,7.08677866906191,0,0,0,0,0,0,0,0,0,0,0.551639951094387,0.891727998294968,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02586563574658,0,0,0,2.22412889249628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512483037175893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0.913158720509496,0.863710364874486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588901401691458,1.5849330247695,0,0,0,0,0,0,0,0,0,0,1.08043821351123,3.0598338470554,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.1741610430924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628776414746108,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0.982827216677626,0.590789906681404,0,8.36321382093172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.04297247958111,0,0,0,0,0,0.902399225814824,0,0.784349769176855,0,0.105551628892876,0,0,0,0,0,0,0.509752546090077,0,0.223874754722178,0,0,0,0,0,0.721287081534056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.26739473068848,0,0,0,0,1.25314822272926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,2.12029607150911,0,0,0.442287822516696,1.83309043480088,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20179492109029,0,2.73771792592801,0,2.4023299700675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.49487848582361,6.69657049611401,7.08776382078031,5.59449413989735,7.08677866906191,0,0,0,0,0,0,0,0,0,0,0.551639951094387,0.891727998294968,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02586563574658,0,0,0,2.22412889249628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512483037175893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0.913158720509496,0.863710364874486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588901401691458,1.5849330247695,0,0,0,0,0,0,0,0,0,0,1.08043821351123,3.0598338470554,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.1741610430924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628776414746108,0,0,0,0,0,0 | ||
|short_description=p2@HNF1A | |||
}} | }} |
Latest revision as of 21:06, 16 September 2015
Short description: | p2@HNF1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HNF1A_5end |
Coexpression cluster: | C3246_hepatoma_hepatocellular_rhabdomyosarcoma_hepatoblastoma_liver_Prostate_Intestinal |
Association with transcript: | 1bp_to_ENST00000535955, ENST00000538626, ENST00000538646, ENST00000541924, ENST00000543427, ENST00000544574_5end |
EntrezGene: | HNF1A |
HGNC: | 11621 |
UniProt: | E0YMK0E0YMK1E0YMJ5F5H3Z5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.09e-27 | 12 |
endodermal cell | 1.93e-14 | 58 |
intestinal epithelial cell | 3.30e-10 | 4 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.87e-10 | 106 |
disease of anatomical entity | 3.96e-08 | 39 |
cell type cancer | 3.05e-07 | 143 |