FFCP PHASE1:Hg19::chr12:52880960..52880967,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:52880960..52880967,+ to FFCP PHASE1:Hg19::chr12:52880960..52880967,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:52880960..52880967,+ | |||
|coexpression_cluster_id=C1170 | |||
|description=CAGE_peak_at_chr12:52880960..52880967,+ | |||
|id=chr12:52880960..52880967,+ | |||
|ontology_enrichment_celltype=CL:0002368!6.56e-31!13;CL:0002076!4.79e-27!43;CL:0000223!9.27e-19!59;CL:0002328!6.51e-17!3;CL:0002202!8.97e-15!9;CL:0002632!8.97e-15!9;CL:0000066!3.59e-13!254;CL:0002159!8.04e-10!13;CL:0000349!2.32e-08!3;CL:0002577!2.32e-08!3;CL:0002541!2.87e-08!3;CL:0000240!3.43e-08!6;CL:0000311!3.43e-08!6;CL:0000079!3.43e-08!6;CL:0000237!3.43e-08!6;CL:0000036!3.43e-08!6;CL:0000357!3.43e-08!6;CL:0000114!3.43e-08!6;CL:0000068!5.04e-08!3;CL:0000069!5.04e-08!3;CL:0000307!5.04e-08!3;CL:0000377!5.04e-08!3;CL:0002621!5.60e-08!3;CL:0002166!6.21e-08!3;CL:0002231!1.15e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002577;1.76e-21;3!CL:0002541;2.06e-21;3!CL:0002328;2.40e-21;3!CL:0000349;2.73e-20;19!CL:0002202;7.37e-16;9!CL:0002632;7.37e-16;9!CL:0002368;3.56e-11;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,1.43e-21,3;CL:0002328,2.41e-21,3;CL:0002541,2.67e-21,3;CL:0000349,2.73e-20,19;CL:0002202,8.59e-16,9;CL:0002632,8.59e-16,9;CL:0002368,3.95e-11,13 | |||
|ontology_enrichment_development_v019=UBERON:0005425;1.93e-16;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!5.00e-18!14;UBERON:0000158!5.00e-18!14;UBERON:0004815!6.51e-17!3;UBERON:0002031!6.51e-17!3;UBERON:0003124!7.90e-13!7;UBERON:0002185!8.22e-13!4;UBERON:0000478!4.04e-10!24;UBERON:0001004!1.96e-09!72;UBERON:0007196!2.12e-09!14;UBERON:0001558!2.12e-09!14;UBERON:0004119!1.02e-08!169;UBERON:0000925!1.02e-08!169;UBERON:0006595!1.02e-08!169;UBERON:0000476!2.87e-08!3;UBERON:0000920!2.87e-08!3;UBERON:0001949!5.60e-08!3;UBERON:0000305!2.75e-07!7;UBERON:0000941!8.67e-07!1;UBERON:0004904!8.67e-07!1;UBERON:0002464!8.67e-07!1;UBERON:0001021!8.67e-07!1;UBERON:0001785!8.67e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;2.06e-21;3!UBERON:0000920;2.06e-21;3!UBERON:0004815;2.40e-21;3!UBERON:0002031;2.40e-21;3!UBERON:0000941;1.93e-16;1!UBERON:0001785;1.93e-16;1!UBERON:0002464;1.93e-16;1!UBERON:0004904;1.93e-16;1!UBERON:0001021;1.93e-16;1!UBERON:0001987;2.26e-16;4!UBERON:0000478;4.39e-16;24!UBERON:0005631;1.61e-14;10!UBERON:0000158;1.61e-14;10!UBERON:0002185;3.23e-13;5!UBERON:0007196;9.19e-10;15!UBERON:0001558;9.19e-10;15!UBERON:0000485;1.04e-09;7!UBERON:0003714;6.93e-09;2!UBERON:0005162;6.93e-09;2!UBERON:0000122;6.93e-09;2!UBERON:0004807;7.25e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003124,2.81e-35,7;UBERON:0005631,1.76e-27,14;UBERON:0000158,1.76e-27,14;UBERON:0004815,2.41e-21,3;UBERON:0002031,2.41e-21,3;UBERON:0000920,2.67e-21,3;UBERON:0000941,1.65e-16,1;UBERON:0001785,1.65e-16,1;UBERON:0002464,1.65e-16,1;UBERON:0004904,1.65e-16,1;UBERON:0001021,1.65e-16,1;UBERON:0003902,1.65e-16,1;UBERON:0005425,1.65e-16,1;UBERON:0001987,1.93e-16,4;UBERON:0004340,1.93e-16,4;UBERON:0000478,4.39e-16,24;UBERON:0002185,3.23e-13,5;UBERON:0004923,5.66e-11,66;UBERON:0007196,1.01e-09,15;UBERON:0001558,1.01e-09,15;UBERON:0003714,6.42e-09,2;UBERON:0005162,6.42e-09,2;UBERON:0000122,6.42e-09,2;UBERON:0000485,9.52e-08,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.59710612239464,1.204823675113,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.70565194428616,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.768251997860379,0,0.201057944823262,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0.425325291727159,1.07470227243418,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.4282304292966,1.66435439510497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601519410909855,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661139661443912,0.576570202095319,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05844323998063,0.670302275535787,0,0,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.72986763370456,0,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0.230850775511391,0,0,0,0,5.42301971544263,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293977192243133,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.51783113895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0.366857197043358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.59710612239464,1.204823675113,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.70565194428616,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.768251997860379,0,0.201057944823262,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0.425325291727159,1.07470227243418,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.4282304292966,1.66435439510497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601519410909855,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661139661443912,0.576570202095319,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05844323998063,0.670302275535787,0,0,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.72986763370456,0,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0.230850775511391,0,0,0,0,5.42301971544263,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293977192243133,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.51783113895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0.366857197043358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:52880960..52880967,+ | |||
}} | }} |
Latest revision as of 09:32, 24 July 2015
Short description: | p@chr12:52880960..52880967, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52880960..52880967, + |
Coexpression cluster: | C1170_Placental_Bronchial_nasal_Esophageal_Urothelial_Corneal_Keratinocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 1.43e-21 | 3 |
bronchial epithelial cell | 2.41e-21 | 3 |
chorionic membrane mesenchymal stem cell | 2.67e-21 | 3 |
extraembryonic cell | 2.73e-20 | 19 |
epithelial cell of tracheobronchial tree | 8.59e-16 | 9 |
epithelial cell of lower respiratory tract | 8.59e-16 | 9 |
respiratory epithelial cell | 3.95e-11 | 13 |
Ontology term | p-value | n |
---|---|---|
chorion | 2.81e-35 | 7 |
extraembryonic membrane | 1.76e-27 | 14 |
membranous layer | 1.76e-27 | 14 |
lower respiratory tract epithelium | 2.41e-21 | 3 |
epithelium of bronchus | 2.41e-21 | 3 |
egg chorion | 2.67e-21 | 3 |
cranial nerve II | 1.65e-16 | 1 |
cranial nerve | 1.65e-16 | 1 |
nerve trunk | 1.65e-16 | 1 |
nerve connecting eye with brain | 1.65e-16 | 1 |
nerve | 1.65e-16 | 1 |
retinal neural layer | 1.65e-16 | 1 |
presumptive neural retina | 1.65e-16 | 1 |
placenta | 1.93e-16 | 4 |
allantois | 1.93e-16 | 4 |
extraembryonic structure | 4.39e-16 | 24 |
bronchus | 3.23e-13 | 5 |
organ component layer | 5.66e-11 | 66 |
tracheobronchial tree | 1.01e-09 | 15 |
lower respiratory tract | 1.01e-09 | 15 |
neural tissue | 6.42e-09 | 2 |
multi cell component structure | 6.42e-09 | 2 |
neuron projection bundle | 6.42e-09 | 2 |
simple columnar epithelium | 9.52e-08 | 9 |