FFCP PHASE1:Hg19::chr12:54423748..54423761,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:54423748..54423761,+ to FFCP PHASE1:Hg19::chr12:54423748..54423761,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:54423748..54423761,+ | |||
|description=CAGE_peak_at_chr12:54423748..54423761,+ | |||
|id=chr12:54423748..54423761,+ | |||
|ontology_enrichment_celltype=CL:0002620!2.17e-10!23;CL:0002334!6.82e-10!12;CL:0000057!1.03e-08!75;CL:0000055!2.55e-07!180;CL:0000136!5.93e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002334;6.83e-21;12!CL:0002620;2.28e-14;23!CL:0000680;1.23e-12;7!CL:0000136;4.20e-10;13!CL:0002615;3.48e-09;3!CL:0002580;4.70e-09;3!CL:0002570;1.16e-08;8!CL:0002564;1.92e-08;3!CL:0000515;1.92e-08;3!CL:0000594;4.27e-08;3!CL:0002617;4.33e-07;2!CL:0000188;9.83e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,3.60e-21,12;CL:0002620,2.03e-14,23;CL:0000057,2.18e-14,76;CL:0000136,8.10e-14,15;CL:0002580,2.83e-09,3;CL:0002320,3.81e-09,361;CL:0002615,4.50e-09,3;CL:0002564,7.11e-09,3;CL:0002570,1.44e-08,8;CL:0000048,3.06e-08,427;CL:0000723,6.17e-08,433;CL:0000594,8.06e-08,3;CL:0000034,1.52e-07,441;CL:0002617,4.23e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!5.76e-10!14;DOID:1115!4.62e-07!20 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002199!1.25e-11!45;UBERON:0002416!1.25e-11!45;UBERON:0002097!1.55e-09!40;UBERON:0004458!5.87e-08!49;UBERON:0000992!8.90e-08!13;UBERON:0004457!4.72e-07!12;UBERON:0000042!4.72e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0004905;3.74e-15;8!UBERON:0000982;3.74e-15;8!UBERON:0004770;3.74e-15;8!UBERON:0004457;3.60e-14;9!UBERON:0000042;3.60e-14;9!UBERON:0001134;7.73e-14;16!UBERON:0002036;7.73e-14;16!UBERON:0011135;1.01e-12;5!UBERON:0002216;1.01e-12;5!UBERON:0011134;1.01e-12;5!UBERON:0002209;1.01e-12;5!UBERON:0002213;1.01e-12;5!UBERON:0007844;1.01e-12;5!UBERON:0011138;1.01e-12;5!UBERON:0001130;1.01e-12;5!UBERON:0001066;1.01e-12;5!UBERON:0001468;1.01e-12;5!UBERON:0001013;8.35e-12;14!UBERON:0003688;1.97e-11;6!UBERON:0002358;1.97e-11;6!UBERON:0003684;1.97e-11;6!UBERON:0001178;1.97e-11;6!UBERON:0001443;1.14e-08;11!UBERON:0002242;1.92e-08;3!UBERON:0000310;5.40e-07;10!UBERON:0005406;6.18e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,6.48e-16,8;UBERON:0000982,6.48e-16,8;UBERON:0004770,6.48e-16,8;UBERON:0011135,2.28e-13,5;UBERON:0002216,2.28e-13,5;UBERON:0011134,2.28e-13,5;UBERON:0002209,2.28e-13,5;UBERON:0002213,2.28e-13,5;UBERON:0005856,2.28e-13,5;UBERON:0005866,2.28e-13,5;UBERON:0005863,2.28e-13,5;UBERON:0007844,2.28e-13,5;UBERON:0011138,2.28e-13,5;UBERON:0001130,2.28e-13,5;UBERON:0001066,2.28e-13,5;UBERON:0001468,2.28e-13,5;UBERON:0001013,8.53e-12,14;UBERON:0003688,2.54e-11,6;UBERON:0002358,2.54e-11,6;UBERON:0003684,2.54e-11,6;UBERON:0001178,2.54e-11,6;UBERON:0004457,2.15e-10,12;UBERON:0000042,2.15e-10,12;UBERON:0002384,2.54e-10,371;UBERON:0002199,1.11e-09,46;UBERON:0002416,1.11e-09,46;UBERON:0002242,7.11e-09,3;UBERON:0003068,7.11e-09,3;UBERON:0002328,7.11e-09,3;UBERON:0004880,7.11e-09,3;UBERON:0001443,7.80e-09,11;UBERON:0000310,4.21e-07,10;UBERON:0005406,5.03e-07,2;UBERON:0002097,6.80e-07,41 | |||
|phase1_expression=3.81524596468169,8.34992043174834,1.26858963686374,6.00439790118782,3.12872766099101,8.72338524100369,0,0.631719873426831,2.61185628199839,0,0,0,0,1.73272894144065,1.65698687863958,0.672325146451775,0,0,0,0,0,0,0,0,0.125542639594803,0.152826811495903,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44575660953827,0,2.02785126545153,0,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.25326102332916,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,3.28787097213962,1.87895197830024,0.971237666208789,1.96631129383148,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,2.33206526395521,1.06778694409284,0,0.300091096084402,0.721367704669072,3.09168648054755,1.48893485065272,2.19409231913646,4.28722822709274,1.51460264546469,0.920498986422993,0,2.13005755509969,2.51880245569101,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0.928735856063958,0,0.236613600079688,0.168584690078102,0.241011029883482,0.55146986366197,0,0,0.674156540800822,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0.245976877086227,0,0.219500570817251,0,0.301586917234893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0.290633938513962,0,0,0,0,0,0,0.444485260045183,0.381988425558278,0,0,1.02827492703324,1.50171528921959,0.571652865261156,0,0,0,0.517086863031111,0,0.845302752556,0,0,0.257207374262142,0,0.532844358032199,0,1.08524321078289,0,0,0,0.791951872933429,0,0,0.799783929456456,0,0,0,0,0,0,2.17171960001369,1.84928690295345,1.96967059563885,0,0,0,0,0,0,0,0,0,0,0,0,1.96306386750624,2.50085260529839,1.89885516589815,0,0,0,0,0,0,0,1.99267679560631,0.184369168541703,0.173767228936166,0,0,0,0,0,0,0,0.907170879989041,2.72918588600655,1.84154367945675,7.29716245525991,0.512556597022804,1.53512174720011,2.0911009748669,2.96836132889982,1.85051632563187,2.48586415438378,1.31403449622095,0,3.02146983995894,0.362578348774867,0,0,0,0,0,0,0.231046011313244,0,0,0.633309773357254,0,0,0,1.54227252690289,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0.206082023295445,0.915694648183434,0.577566499444116,0.574265537996172,0,0,0.580024309752732,1.3864375540318,0.460511024178389,1.10269257987624,1.07420244868274,1.59518363305651,1.10794615640931,0.623224249527161,0,0,0,0,0,0.62962469366128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70599442741899,0,0,0,0,0,0,0,0,0,0,0,0,1.43411352204052,0.491245205065606,0,0,1.89996871767898,3.95153871551882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.854592569019785,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0.390776190804081,0,0,0,0,0,0.18714054040822,0,0.242721043499027,0,0.284136146806413,0,0,0.307160702099232,0,0,0,0,0.211125408127993,0.19924798825107,0.276283915531148,0,0.102268682502155,0.123084805461069,0,0,0,0,0.0986434056369336,0,0,0,0,0,0.260427761085233,0.0874599999961957,0.724999575434793,0,0,0.472775363535873,0.344743373241465,0.583209226766509,1.21537496453305,0,0,0,0,0,0,0.21787692703798,0,0,0,0,0.269272933229316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0.216388639742091,0,0,0,0,0,0,0,1.60515529459758,0,0,0,0,0.394584402849391,0,0,0,0,0.207376382794494,0,0,0,0,0,0.554698692052555,0,0,0,0.873633341210151,0.343972064943233,0.19351266257817,0.292357268344742,0.164230914106418,0.0969890164884194,0.0882561266915003,0,0,0.19871461170299,0,0.782205530939212,0,0,0.599428828746391,0.144090417154106,0.229073192331831,0,0,0.124252535565433,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.262272940674991,0,0.35857467866569,0,0.714695326373367,0,0.25426853765475,0,0,0.326587360109409,0,0,1.02232813071253,0.453248366080503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0,0,0.314108192500469,0,0,0,0,0,0.124192805882767,0.553394539744923,0,0.151649117541648,0.285465333544967,0.235265819698172,0,0.579684114443301,2.98509605773748,3.97312626740282,2.21922344601045,1.13641803165053,1.25783950876288,3.55924488638614,0.228840068396924,0,0.15543720058278,0,0.477890301491107,0.449803112163605,1.08684069813382,2.48823724704513,0.53168342911599,0.521745061811734,0.751288044986092,0.380805212168795,1.22061219961398,1.27294061441792,0.644463342254931,1.39210127963548,0.796191777397232,0.800055529326307,4.8075398725591,1.01024846629776,0,0,0.428883182749851,0,0.453411851024545,0.463044948647668,0.244736704506468,0.537266523244462,0,0,0.353378291891762,0,0,0.256241518587947,0,0,0,0,0,0.163565394255844,0.655219697692825,0,0.211312123358627,0,0,0,0,0.368211900503681,0,0,0.127894371303652,0,0.314531883711793,0.327628914576042,0,2.55089904122019,0.991486114072017,0.558644917973244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0.366857197043358,0,0,0,0.397832444232549,0.752103283492572,0.40341013740704,0,0,0,0,0,0,0,0,0,0,1.4886335351678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|short_description=p@chr12:54423748..54423761,+ | |||
}} | }} |
Latest revision as of 09:58, 24 July 2015
Short description: | p@chr12:54423748..54423761, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:54423748..54423761, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 3.60e-21 | 12 |
skin fibroblast | 2.03e-14 | 23 |
fibroblast | 2.18e-14 | 76 |
fat cell | 8.10e-14 | 15 |
preadipocyte of the breast | 2.83e-09 | 3 |
connective tissue cell | 3.81e-09 | 361 |
adipocyte of omentum tissue | 4.50e-09 | 3 |
nucleus pulposus cell of intervertebral disc | 7.11e-09 | 3 |
mesenchymal stem cell of adipose | 1.44e-08 | 8 |
multi fate stem cell | 3.06e-08 | 427 |
somatic stem cell | 6.17e-08 | 433 |
skeletal muscle satellite cell | 8.06e-08 | 3 |
stem cell | 1.52e-07 | 441 |
adipocyte of breast | 4.23e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
articulation | 6.48e-16 | 8 |
skeletal joint | 6.48e-16 | 8 |
articular system | 6.48e-16 | 8 |
intervertebral cartilage | 2.28e-13 | 5 |
symphysis | 2.28e-13 | 5 |
nonsynovial joint | 2.28e-13 | 5 |
fibrous joint | 2.28e-13 | 5 |
cartilaginous joint | 2.28e-13 | 5 |
developing mesenchymal condensation | 2.28e-13 | 5 |
pre-cartilage condensation | 2.28e-13 | 5 |
cartilaginous condensation | 2.28e-13 | 5 |
cartilage element | 2.28e-13 | 5 |
post-cranial axial skeletal system | 2.28e-13 | 5 |
vertebral column | 2.28e-13 | 5 |
intervertebral disk | 2.28e-13 | 5 |
intervertebral joint | 2.28e-13 | 5 |
adipose tissue | 8.53e-12 | 14 |
omentum | 2.54e-11 | 6 |
peritoneum | 2.54e-11 | 6 |
abdominal cavity | 2.54e-11 | 6 |
visceral peritoneum | 2.54e-11 | 6 |
cavity lining | 2.15e-10 | 12 |
serous membrane | 2.15e-10 | 12 |
connective tissue | 2.54e-10 | 371 |
integument | 1.11e-09 | 46 |
integumental system | 1.11e-09 | 46 |
nucleus pulposus | 7.11e-09 | 3 |
axial mesoderm | 7.11e-09 | 3 |
notochord | 7.11e-09 | 3 |
chordamesoderm | 7.11e-09 | 3 |
chest | 7.80e-09 | 11 |
breast | 4.21e-07 | 10 |
perirenal fat | 5.03e-07 | 2 |
skin of body | 6.80e-07 | 41 |