FFCP PHASE1:Hg19::chr15:72499153..72499231,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr15:72499153..72499231,- to FFCP PHASE1:Hg19::chr15:72499153..72499231,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5315 | |EntrezGene=5315 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9021 | |HGNC=9021 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=4bp_to_uc002ats.1_5end | |||
|cluster_id=chr15:72499153..72499231,- | |||
|description=CAGE_peak_3_at_PKM2_5end | |||
|id=chr15:72499153..72499231,- | |||
|ontology_enrichment_celltype=CL:0000548!3.19e-18!679;CL:0000004!3.19e-18!679;CL:0000255!3.19e-18!679;CL:0000012!5.94e-17!682;CL:0000055!2.77e-14!180;CL:0000144!3.58e-13!625;CL:0002321!1.56e-12!248;CL:0000220!1.59e-12!246;CL:0002371!7.06e-12!591;CL:0000222!1.96e-09!119;CL:0000066!2.35e-09!254;CL:0000003!4.49e-09!722;CL:0000192!1.99e-08!42;CL:0000514!1.99e-08!42;CL:0000680!3.79e-08!57;CL:0000056!3.79e-08!57;CL:0000355!3.79e-08!57;CL:0000183!4.62e-08!59;CL:0000359!5.30e-08!32;CL:0000063!6.98e-08!578;CL:0000187!2.73e-07!54;CL:0000393!8.30e-07!60;CL:0000211!8.30e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.82e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.88e-12,250;CL:0000066,2.35e-09,253;CL:0000222,4.31e-09,121;CL:0000359,6.84e-08,32;CL:0000192,1.22e-07,43;CL:0000514,1.22e-07,43;CL:0000680,1.28e-07,58;CL:0000056,1.28e-07,58;CL:0000355,1.28e-07,58;CL:0000187,8.91e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!2.20e-09!82;UBERON:0000914!6.42e-09!83;UBERON:0002329!6.42e-09!83;UBERON:0003077!6.42e-09!83;UBERON:0003059!6.42e-09!83;UBERON:0007282!6.42e-09!83;UBERON:0009618!6.42e-09!83;UBERON:0007285!6.42e-09!83;UBERON:0005256!5.76e-08!143;UBERON:0004290!5.96e-08!70;UBERON:0001637!9.85e-08!42;UBERON:0003509!9.85e-08!42;UBERON:0004572!9.85e-08!42;UBERON:0002204!1.67e-07!167;UBERON:0001134!2.79e-07!61;UBERON:0002036!2.79e-07!61;UBERON:0003082!2.79e-07!61 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.49e-09,78;UBERON:0000486,6.32e-09,83;UBERON:0001637,1.03e-07,42;UBERON:0003509,1.03e-07,42;UBERON:0004572,1.03e-07,42;UBERON:0007524,1.31e-07,73;UBERON:0002329,1.70e-07,71;UBERON:0003059,1.70e-07,71;UBERON:0007282,1.70e-07,71;UBERON:0004290,1.70e-07,71;UBERON:0009618,1.70e-07,71;UBERON:0003077,2.10e-07,72;UBERON:0007285,2.10e-07,72;UBERON:0002204,4.87e-07,167;UBERON:0001134,8.31e-07,62;UBERON:0002036,8.31e-07,62;UBERON:0003082,8.31e-07,62 | |||
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| ||
|short_description=p3@PKM2 | |||
}} | }} |
Latest revision as of 22:23, 18 September 2015
Short description: | p3@PKM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PKM2_5end |
Coexpression cluster: | NA |
Association with transcript: | 4bp_to_uc002ats.1_5end |
EntrezGene: | PKM2 |
HGNC: | 9021 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.88e-12 | 250 |
epithelial cell | 2.35e-09 | 253 |
mesodermal cell | 4.31e-09 | 121 |
vascular associated smooth muscle cell | 6.84e-08 | 32 |
smooth muscle cell | 1.22e-07 | 43 |
smooth muscle myoblast | 1.22e-07 | 43 |
muscle precursor cell | 1.28e-07 | 58 |
myoblast | 1.28e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.28e-07 | 58 |
muscle cell | 8.91e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 2.49e-09 | 78 |
multilaminar epithelium | 6.32e-09 | 83 |
artery | 1.03e-07 | 42 |
arterial blood vessel | 1.03e-07 | 42 |
arterial system | 1.03e-07 | 42 |
dense mesenchyme tissue | 1.31e-07 | 73 |
somite | 1.70e-07 | 71 |
presomitic mesoderm | 1.70e-07 | 71 |
presumptive segmental plate | 1.70e-07 | 71 |
dermomyotome | 1.70e-07 | 71 |
trunk paraxial mesoderm | 1.70e-07 | 71 |
paraxial mesoderm | 2.10e-07 | 72 |
presumptive paraxial mesoderm | 2.10e-07 | 72 |
musculoskeletal system | 4.87e-07 | 167 |
skeletal muscle tissue | 8.31e-07 | 62 |
striated muscle tissue | 8.31e-07 | 62 |
myotome | 8.31e-07 | 62 |