FFCP PHASE1:Hg19::chr19:45349630..45349641,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:45349630..45349641,+ to FFCP PHASE1:Hg19::chr19:45349630..45349641,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5819 | |EntrezGene=5819 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9707 | |HGNC=9707 | ||
|TSSclassifier=strong | |||
|UniProt=Q92692 | |UniProt=Q92692 | ||
|association_with_transcript=237bp_to_ENST00000252483,ENST00000252485,NM_001042724,NM_002856,uc002ozv.2,uc002ozw.1_5end | |||
|cluster_id=chr19:45349630..45349641,+ | |||
|description=CAGE_peak_2_at_PVRL2_5end | |||
|id=chr19:45349630..45349641,+ | |||
|ontology_enrichment_celltype=CL:0000222!6.78e-25!119;CL:0002321!8.56e-16!248;CL:0000220!1.63e-15!246;CL:0000183!5.14e-13!59;CL:0002078!1.03e-12!44;CL:0000213!2.14e-12!57;CL:0000215!2.14e-12!57;CL:0000187!4.45e-11!54;CL:0000680!5.33e-11!57;CL:0000056!5.33e-11!57;CL:0000355!5.33e-11!57;CL:0000115!6.66e-11!35;CL:0000393!8.67e-11!60;CL:0000211!8.67e-11!60;CL:0000192!9.26e-11!42;CL:0000514!9.26e-11!42;CL:0000359!5.13e-10!32;CL:0002139!3.65e-09!24;CL:1000449!4.76e-09!16;CL:0000066!9.47e-09!254;CL:0000071!4.51e-08!18;CL:0002546!4.51e-08!18;CL:0000548!5.27e-08!679;CL:0000004!5.27e-08!679;CL:0000255!5.27e-08!679;CL:0000012!7.64e-08!682;CL:1000497!8.34e-08!18;CL:0002518!8.34e-08!18;CL:0002681!1.26e-07!13;CL:0002584!1.26e-07!13;CL:0000144!1.49e-07!625;CL:1000507!9.21e-07!12;CL:1000494!9.21e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:1000449;4.65e-14;15!CL:0000359;2.70e-13;32!CL:0000115;6.63e-12;36!CL:0002681;9.51e-12;12!CL:0002584;9.51e-12;12!CL:1000497;9.80e-12;17!CL:0002518;9.80e-12;17!CL:0002139;8.89e-11;24!CL:0002078;5.18e-10;45!CL:0000192;7.79e-10;43!CL:1000507;9.93e-10;10!CL:1000494;9.93e-10;10!CL:0000071;3.81e-09;18!CL:1000746;4.08e-08;7!CL:1000612;4.08e-08;7!CL:0000213;7.03e-08;58!CL:0000215;7.03e-08;58!CL:1000413;9.08e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.50e-24,121;CL:0002078,6.34e-15,45;CL:0000115,4.30e-14,36;CL:0000359,4.35e-14,32;CL:1000449,8.88e-14,15;CL:0000192,5.65e-13,43;CL:0000514,5.65e-13,43;CL:0002321,3.67e-12,250;CL:0000213,5.15e-12,58;CL:0000215,5.15e-12,58;CL:0000187,5.45e-12,55;CL:0002681,1.37e-11,12;CL:0002584,1.37e-11,12;CL:1000497,1.69e-11,17;CL:0002518,1.69e-11,17;CL:0000393,3.61e-11,61;CL:0000211,3.61e-11,61;CL:0002139,5.04e-11,24;CL:0000680,8.79e-11,58;CL:0000056,8.79e-11,58;CL:0000355,8.79e-11,58;CL:0000071,1.00e-09,18;CL:0002546,1.00e-09,18;CL:1000507,1.78e-09,10;CL:1000494,1.78e-09,10;CL:1000746,4.43e-08,7;CL:1000612,4.43e-08,7;CL:1000413,5.47e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000514;7.79e-10;43!CL:0002546;3.81e-09;18!CL:0000222;1.30e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!1.31e-27!118;UBERON:0002049!4.35e-22!79;UBERON:0007798!4.35e-22!79;UBERON:0000490!2.99e-21!138;UBERON:0005256!7.36e-19!143;UBERON:0000055!2.38e-18!69;UBERON:0004872!2.80e-18!84;UBERON:0001981!9.36e-17!60;UBERON:0007500!9.36e-17!60;UBERON:0004537!9.36e-17!60;UBERON:0006965!9.36e-17!60;UBERON:0001009!1.97e-16!113;UBERON:0002100!2.40e-16!216;UBERON:0004535!3.66e-16!110;UBERON:0000926!2.09e-15!448;UBERON:0004120!2.09e-15!448;UBERON:0006603!2.09e-15!448;UBERON:0002417!2.37e-14!61;UBERON:0000916!2.37e-14!61;UBERON:0000119!3.04e-14!312;UBERON:0000483!6.30e-14!309;UBERON:0009569!9.67e-14!113;UBERON:0000468!1.06e-13!659;UBERON:0005172!1.96e-13!55;UBERON:0005173!1.96e-13!55;UBERON:0001637!1.17e-12!42;UBERON:0003509!1.17e-12!42;UBERON:0004572!1.17e-12!42;UBERON:0000467!1.29e-12!625;UBERON:0000480!2.29e-12!626;UBERON:0000477!2.55e-12!286;UBERON:0004111!3.34e-12!241;UBERON:0003104!1.20e-11!238;UBERON:0009142!1.20e-11!238;UBERON:0000025!3.07e-11!194;UBERON:0002385!5.40e-10!63;UBERON:0001015!5.40e-10!63;UBERON:0000383!5.40e-10!63;UBERON:0001134!8.68e-10!61;UBERON:0002036!8.68e-10!61;UBERON:0003082!8.68e-10!61;UBERON:0003081!1.76e-09!216;UBERON:0002113!1.83e-09!27;UBERON:0003918!1.83e-09!27;UBERON:0005095!1.83e-09!27;UBERON:0007687!1.83e-09!27;UBERON:0006555!2.40e-09!17;UBERON:0005103!2.40e-09!17;UBERON:0000083!2.40e-09!17;UBERON:0009201!2.40e-09!17;UBERON:0004819!2.40e-09!17;UBERON:0006553!2.40e-09!17;UBERON:0003074!2.40e-09!17;UBERON:0003060!2.40e-09!17;UBERON:0000080!2.56e-09!18;UBERON:0002120!2.56e-09!18;UBERON:0004875!2.56e-09!18;UBERON:0005721!2.56e-09!18;UBERON:0005754!2.56e-09!18;UBERON:0007297!2.56e-09!18;UBERON:0000481!3.04e-09!347;UBERON:0006554!3.11e-09!44;UBERON:0003064!3.97e-09!37;UBERON:0004573!4.39e-09!33;UBERON:0004571!4.39e-09!33;UBERON:0004211!4.76e-09!16;UBERON:0001285!4.76e-09!16;UBERON:0007684!4.76e-09!16;UBERON:0003220!4.76e-09!16;UBERON:0004208!4.76e-09!16;UBERON:0000922!5.34e-09!612;UBERON:0000923!5.55e-09!604;UBERON:0005291!5.55e-09!604;UBERON:0006598!5.55e-09!604;UBERON:0002532!5.55e-09!604;UBERON:0004876!7.13e-09!20;UBERON:0002050!8.91e-09!605;UBERON:0005423!8.91e-09!605;UBERON:0001008!1.31e-08!45;UBERON:0003887!1.50e-08!21;UBERON:0000353!1.84e-08!17;UBERON:0003103!2.15e-08!69;UBERON:0004290!4.01e-08!70;UBERON:0001986!4.51e-08!18;UBERON:0004638!4.51e-08!18;UBERON:0004852!4.51e-08!18;UBERON:0001851!6.57e-08!16;UBERON:0000487!7.53e-08!22;UBERON:0000914!8.70e-08!83;UBERON:0002329!8.70e-08!83;UBERON:0003077!8.70e-08!83;UBERON:0003059!8.70e-08!83;UBERON:0007282!8.70e-08!83;UBERON:0009618!8.70e-08!83;UBERON:0007285!8.70e-08!83;UBERON:0001225!1.26e-07!13;UBERON:0008987!1.26e-07!13;UBERON:0000466!1.37e-07!126;UBERON:0006914!2.63e-07!25;UBERON:0000489!2.84e-07!32;UBERON:0003886!2.85e-07!63;UBERON:0000058!3.51e-07!26;UBERON:0000486!7.44e-07!82;UBERON:0009773!9.21e-07!12;UBERON:0001231!9.21e-07!12;UBERON:0004810!9.21e-07!12 | |||
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|phase1_expression=0.181678379270557,0.214100523890983,0.704772020479856,1.0007329835313,0.893922188854576,0,0,0,0,2.94880723801811,7.6758128476967,0.873765488520689,0.527533956456907,0,0.994192127183747,2.01697543935533,1.20538905604795,0,2.43966399395253,1.23121058076788,2.24400760368678,1.88072832886853,0.572471974262113,0.684372125364421,0.251085279189606,0,0,0,0,0,0.928896739896456,0.919421224478927,0.90361775633475,0.369754010166788,0,0,0.293600439334847,1.66198622559563,0.200544447470142,1.08505435357926,0,0.32389366601898,0.257575567634187,0,1.13362783106643,2.42584061187816,0.697287110717054,1.23350366406548,0,1.1507695692886,0.768482119587302,2.60130452877444,1.03423704220986,0,1.35426486594342,0.188242339542605,0.545812300115692,1.57306439111559,0.918251677112708,0.641858054152187,1.91801137739712,0,0.797854630486527,3.83602275479425,0.580418477257168,0,1.86846674698672,0.502497330513487,0.521482918420201,1.3031330682307,1.21079900526674,1.84138817993782,1.58231193720442,0,0,0.209658645508376,0.112328631146495,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68152568894461,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,2.43806866313962,4.69490601792545,1.2786256184353,2.1686349143074,0,1.15877215168659,0,0,1.89069634328136,1.99556457716308,1.58102614247627,0.982343066232845,0.728590576585084,0.741568885568859,0,0,1.19662164466979,0,0,0,1.98762407366705,2.58070378531837,2.42998351125316,4.52246353539208,6.29249154314859,3.57653454522088,2.29894463190492,1.29208379584664,3.20189636418039,1.00416183829401,3.22263453687318,1.52054421143703,3.90499292077071,0.367663080345869,7.29127753093584,1.51809538082936,0.673588117878509,0.563057402416611,1.53316637465883,5.69559395740877,1.83201743930407,0,7.75560528296651,0.872188104285069,0.496971951695318,0.633152558322899,0.397227542439656,0.286836620748814,0.354668382198357,0.560677600142307,3.20246987189115,3.20667812942308,0.933633106199299,0.67355336034844,0.817309515567294,3.93529311876822,2.30470369792,0.468642863667593,0,0,0.298897361103602,0.352303495931295,0,0.140450806702248,0.204154171254893,0.368502951935304,0.206651562351531,0,0.494533858557114,4.55080680969013,3.59309070908119,0.168336113954066,0.375355559615893,0.277064115484183,0.438977620880838,0.612975591598039,1.20190447125277,1.58805056424029,0.89694817844431,0.85422955527427,0.847727604638247,0.300091096084402,0.206105058476878,0.772921620136887,0.18611685633159,0.506328996723799,0.292311015483596,0,0.552299391853796,0.323292113637624,1.42003837006646,1.10827308050404,1.18692414617341,0.193260853163297,0.545492241181669,0,0.975789649036763,0.795178609928912,0.116193942869518,0.725627385107593,0.252320850875628,1.09493207722749,3.12899064659632,3.21620469096443,0,0,0.721879481669586,0.118306800039844,0.168584690078102,0,0,0.217879444092406,0.237270619111097,0.269662616320329,0.588664395376038,0,5.90524363699719,7.01208869017229,3.2925920906512,2.94017422771084,2.53510069643662,0.982827216677626,5.31710916013264,0,2.82873408649161,3.08822058537346,0.658501712451753,0,0.201057944823262,0.277765335475589,1.3032332212413,1.03993478527958,2.88662684050547,0.579652024875384,3.40485213283883,1.01056513432752,0.462985512576611,1.52203321787679,4.74122638775565,3.43394464837949,0,0,0.445893486866185,0.93733833986777,0.671928512795438,0.992425680696705,0.179117045405697,0.290633938513962,0.383382679165211,0,0.264145302039678,0.207328115540772,0,0.50496973370552,0.063497894292169,0,1.17217447210047,0,0.102827492703324,0,0.285826432630578,0.897048674762886,0.87192013766656,0.51336800074665,1.93907573636667,3.57656445851882,0.845302752556,2.39344304926383,3.12022310734098,0.514414748524284,0,0.532844358032199,0.714889968290738,2.17048642156577,0.823240336780769,0.325736184293735,0.355391948742546,3.16780749173372,6.93310567237048,0.871533458600294,7.69792032101839,0,0,0,0.958499421966331,0,1.42636905040718,0.579125226670317,0.821905290201534,0.358121926479791,0,0,0,0.128343036279748,0,0,0,0.167516265334349,0.637938751653163,0,11.966458368161,0,0.24538298343828,0,1.89885516589815,1.45579603071565,0.713715955188647,0.473107245101804,0.117141414992713,0.902838299183157,0,0,1.99267679560631,1.10621501125022,0.434418072340414,1.17480694477644,1.02943027143257,0.206768026122887,0.647142602455851,0.533637789017222,0.606255142892519,1.66435439510497,0.30239029332968,0.496215615637554,0.153461973288062,0.841980283299221,0.768834895534206,1.02341449813341,2.2519548960105,0,0.154209693802656,1.24293207719189,0.328508624055237,0.519254429183621,0.116210378459959,2.41718899183244,1.00253235151642,0.644566922551274,1.37777337797528,2.00300284807389,1.57349297951309,5.86559496779635,1.07821471946181,5.49044838423799,5.84556898613043,1.16106791782163,2.27466768141793,2.55140557914773,3.23873874153209,6.16909010761157,10.5669110642103,13.0439341202262,2.54876273045038,4.98645605357235,2.46262230194396,0,0,0.256450125116389,5.576248976895,1.62689197332152,1.1334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| ||
|short_description=p2@PVRL2 | |||
}} | }} |
Latest revision as of 14:27, 18 September 2015
Short description: | p2@PVRL2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PVRL2_5end |
Coexpression cluster: | NA |
Association with transcript: | 237bp_to_ENST00000252483, ENST00000252485, NM_001042724, NM_002856, uc002ozv.2, uc002ozw.1_5end |
EntrezGene: | PVRL2 |
HGNC: | 9707 |
UniProt: | Q92692 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.50e-24 | 121 |
meso-epithelial cell | 6.34e-15 | 45 |
endothelial cell | 4.30e-14 | 36 |
vascular associated smooth muscle cell | 4.35e-14 | 32 |
epithelial cell of nephron | 8.88e-14 | 15 |
smooth muscle cell | 5.65e-13 | 43 |
smooth muscle myoblast | 5.65e-13 | 43 |
embryonic cell | 3.67e-12 | 250 |
lining cell | 5.15e-12 | 58 |
barrier cell | 5.15e-12 | 58 |
muscle cell | 5.45e-12 | 55 |
kidney cortical cell | 1.37e-11 | 12 |
renal cortical epithelial cell | 1.37e-11 | 12 |
kidney cell | 1.69e-11 | 17 |
kidney epithelial cell | 1.69e-11 | 17 |
electrically responsive cell | 3.61e-11 | 61 |
electrically active cell | 3.61e-11 | 61 |
endothelial cell of vascular tree | 5.04e-11 | 24 |
muscle precursor cell | 8.79e-11 | 58 |
myoblast | 8.79e-11 | 58 |
multi-potent skeletal muscle stem cell | 8.79e-11 | 58 |
blood vessel endothelial cell | 1.00e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.00e-09 | 18 |
kidney tubule cell | 1.78e-09 | 10 |
nephron tubule epithelial cell | 1.78e-09 | 10 |
glomerular cell | 4.43e-08 | 7 |
kidney corpuscule cell | 4.43e-08 | 7 |
endothelial cell of artery | 5.47e-07 | 9 |