FFCP PHASE1:Hg19::chr20:6103830..6103851,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:6103830..6103851,- to FFCP PHASE1:Hg19::chr20:6103830..6103851,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55612 | |EntrezGene=55612 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15889 | |HGNC=15889 | ||
|TSSclassifier=strong | |||
|UniProt=G3V1L6 | |UniProt=G3V1L6 | ||
|association_with_transcript=-153bp_to_ENST00000536936_5end | |||
|cluster_id=chr20:6103830..6103851,- | |||
|coexpression_cluster_id=C1483 | |||
|description=CAGE_peak_6_at_FERMT1_5end | |||
|id=chr20:6103830..6103851,- | |||
|ontology_enrichment_celltype=CL:0000066!1.14e-13!254;CL:0002076!4.50e-13!43;CL:0000223!3.17e-10!59;CL:0002368!8.38e-10!13;CL:0002321!1.54e-08!248;CL:0000220!4.02e-08!246 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.38e-17;13!CL:0002076;8.01e-16;42!CL:0002159;2.14e-15;14!CL:0000244;5.67e-10;4!CL:0000731;5.67e-10;4!CL:0002202;1.23e-09;9!CL:0002632;1.23e-09;9!CL:0002621;1.41e-08;3!CL:0000307;2.10e-08;3!CL:0002328;3.21e-08;3!CL:0002166;7.85e-08;3!CL:0000622;2.04e-07;5!CL:0000240;7.77e-07;6!CL:0000311;7.77e-07;6!CL:0000079;7.77e-07;6!CL:0000237;7.77e-07;6!CL:0000362;9.65e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.04e-19,42;CL:0002368,1.41e-17,13;CL:0000066,2.43e-16,253;CL:0002159,2.25e-15,14;CL:0000223,5.85e-14,58;CL:0000244,6.77e-10,4;CL:0000731,6.77e-10,4;CL:0002202,1.25e-09,9;CL:0002632,1.25e-09,9;CL:0002621,1.42e-08,3;CL:0000068,2.18e-08,3;CL:0000069,2.18e-08,3;CL:0000307,2.18e-08,3;CL:0000377,2.18e-08,3;CL:0002328,3.19e-08,3;CL:0002321,6.14e-08,250;CL:0002166,8.26e-08,3;CL:0000622,1.79e-07,5;CL:0002077,2.25e-07,34;CL:0000240,7.18e-07,6;CL:0000311,7.18e-07,6;CL:0000079,7.18e-07,6;CL:0000237,7.18e-07,6;CL:0000036,7.18e-07,6;CL:0000357,7.18e-07,6;CL:0000114,7.18e-07,6;CL:0000076,8.02e-07,63;CL:0000362,9.17e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000377;2.10e-08;3!CL:0000223;8.27e-08;58!CL:0000357;7.77e-07;6!CL:0000114;7.77e-07;6 | |||
|ontology_enrichment_disease=DOID:1749!1.56e-07!14;DOID:0050687!8.14e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.33e-08!365;UBERON:0001004!3.25e-08!72;UBERON:0000481!7.84e-08!347;UBERON:0004119!1.22e-07!169;UBERON:0000925!1.22e-07!169;UBERON:0006595!1.22e-07!169;UBERON:0003104!5.72e-07!238;UBERON:0009142!5.72e-07!238;UBERON:0000922!6.72e-07!612;UBERON:0000065!9.23e-07!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;5.25e-12;5!UBERON:0000486;5.26e-12;12!UBERON:0005910;6.39e-10;6!UBERON:0001949;1.41e-08;3!UBERON:0004815;3.21e-08;3!UBERON:0002031;3.21e-08;3!UBERON:0005911;7.50e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,6.48e-12,5;UBERON:0005910,7.60e-10,6;UBERON:0001949,1.42e-08,3;UBERON:0004815,3.19e-08,3;UBERON:0002031,3.19e-08,3;UBERON:0003102,1.11e-07,99 | |||
|phase1_expression=0,0.214100523890983,0.281908808191942,0,0,0,0,0.631719873426831,0,0.245733936501509,0.697801167972428,1.74753097704138,1.31883489114227,0,0,0,1.20538905604795,0,1.46379839637152,0.246242116153576,0.204000691244253,0.313454721478088,0,0.410623275218653,0,0.534893840235659,0.738905305049512,0.865818594450472,0,0,0,6.43594857135249,6.92773613189975,8.8740962440029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.283604451492204,0,0.351339142772504,0.196468613246569,2.18577172975525,3.33705998505986,0,0.348259474598534,0.26591592103773,0,0,0,0,0,0.347140501607594,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0.183201743930407,0,0,5.23312862571041,0,0.12663051166458,0.264818361626438,0.286836620748814,0.709336764396714,0.560677600142307,0,0.49333509683432,0.622422070799533,0,0,0,0,0,0.312160076830321,0.570471821544449,0.448346041655403,0.117434498643765,0,0.140450806702248,0.204154171254893,0,0,0,0,0,0,0,0,0.554128230968366,0,0,0,0.226864366320042,0.358779271377724,0,0,0.300091096084402,0.206105058476878,0.257640540045629,0,0,0,0,0.0920498986422993,0,0,0,0,16.4271725188802,10.0916064618609,10.3249654340041,0.487894824518382,0.530119073285941,0.464775771478074,0.518305275076852,0,0.36497735907583,0,0,0,0,0,0.473227200159376,0.337169380156203,0.964044119533928,0.110293972732394,0.217879444092406,0.71181185733329,0.269662616320329,0.392442930250692,0.38474715694639,0,0,0,0,0,0,0,0,0.368965315629341,0.343135620597051,11.9627811095402,6.74410519545717,20.5079103719727,2.87024179991442,0,0,0,0.34779121492523,0.117408694235822,0,0,0,0,0,0,0,0.148631162288728,5.62403003920662,4.70349958956807,4.25325291727159,14.8667147686728,8.71901815541886,9.20118429996507,0,0,0,0,0,0.126995788584338,0,0,0,0,0,0,0,0.43596006883328,0.2933531432838,0.129271715757778,0,0,0,0,0.257207374262142,0,0.532844358032199,0,0,0,0.65147236858747,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.434343920002738,0,1.25342674267927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,1.81876542867756,0,0,0.248107807818777,0.153461973288062,0,0.128139149255701,0,0.482561763430822,0,1.85051632563187,1.77561725313127,2.54594183642808,1.55776328755086,0.929683027679674,0.604297247958111,6.81721999031168,12.5230144952819,0.114814448164607,0,0.262248829918848,0.451199612907412,0.770153371044148,0.784349769176855,1.46139224653261,0.949964660035881,0,0,0.215915916102139,0,0.812839312631559,0,0.764628819135115,0,0.223874754722178,0,0,0,0,0,0,0.0915694648183434,0,6.89118645595407,3.90036147621913,0,0.386682873168488,0.308097234229289,0.921022048356777,0.964856007391714,0.537101224341368,0.435050081742686,0.681813019328807,0.0890320356467374,7.60310610660499,13.0689245808272,6.63586104971837,4.8555734810664,0.929691098594572,0.94443704049192,0,0,1.59691809095107,0.869932992075073,0.37064843820784,0.286249773483982,0,0,0.190630193923825,0,0,0.95460974377781,0.78494864019923,0,0,0.235624804691373,0.606547444719948,1.58510321173008,1.26377536871694,0,1.21856744815642,2.11300293513511,0.136499911407986,0,1.13008116620243,1.65409603063837,0,0.438450885253763,0,0,0,0,0.281695602532241,0.143411352204052,0.0982490410131212,0,0.354761064070598,0,0.329294892959902,0.379473173765715,0,12.3164304288655,7.37332503089366,7.62236894029258,0,6.45758059006845,5.05414427002877,3.10401107475673,5.51336160496703,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0.324621940274555,0,0.228234679033192,0,0,0,0,0,0,0,0,0.671028323677248,0,0.19538809540204,0,0,0,0,0,0.37428108081644,0.146508179271894,0,0.111443384277478,0.568272293612826,2.3874448473769,0,0.921482106297696,0.994147647766298,0.281338832821026,0.333926115068718,0,2.11125408127993,0,0,0.251932747854276,0,0.246169610922139,0,0.718946809178615,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0.341380344856499,0.254253650292766,0,0,0.291604613383254,0,0.885741385813839,0.723578631752448,0,0,0,0.219385397153973,0,1.25481369850743,0.307801034015188,0,0.23056390438806,0.0897576444097721,0.217294743844016,0.957003479195758,0.274792780205587,1.06606955203727,0,0,0,0,0,0,0,0.158936578980379,0.210998064528027,0,0,0,0,0,0,1.77912677208373,1.60633120630454,2.61054873763638,0.269604531922708,0,0.468528891450678,0,0.391329237864179,0.485560759068186,0,0,0,0.063186579628488,0,0.103688191397247,7.97584647248622,4.96487933813248,4.70899377610838,2.38944859545918,0,0.138674673013139,0,2.54780233277382,5.92002604746737,0.34945333648406,1.54787429224455,0.19351266257817,0.292357268344742,0.164230914106418,0.484945082442097,0.176512253383001,0,0.548167698587004,0,0.443175571691151,0.391102765469606,3.36667045056442,0.426905989478705,0.19980960958213,0,0,0,1.58460277786965,0.248505071130865,0,0.135904206073614,0.418411385249333,0,0.577901179803038,0,0.273810757783986,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0.23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| 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| ||
|short_description=p6@FERMT1 | |||
}} | }} |
Latest revision as of 10:41, 17 September 2015
Short description: | p6@FERMT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_FERMT1_5end |
Coexpression cluster: | C1483_Gingival_Keratinocyte_Mammary_Prostate_Tracheal_Small_embryonic |
Association with transcript: | -153bp_to_ENST00000536936_5end |
EntrezGene: | FERMT1 |
HGNC: | 15889 |
UniProt: | G3V1L6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.04e-19 | 42 |
respiratory epithelial cell | 1.41e-17 | 13 |
epithelial cell | 2.43e-16 | 253 |
general ecto-epithelial cell | 2.25e-15 | 14 |
endodermal cell | 5.85e-14 | 58 |
transitional epithelial cell | 6.77e-10 | 4 |
urothelial cell | 6.77e-10 | 4 |
epithelial cell of tracheobronchial tree | 1.25e-09 | 9 |
epithelial cell of lower respiratory tract | 1.25e-09 | 9 |
gingival epithelial cell | 1.42e-08 | 3 |
duct epithelial cell | 2.18e-08 | 3 |
branched duct epithelial cell | 2.18e-08 | 3 |
tracheal epithelial cell | 2.18e-08 | 3 |
tracheoblast | 2.18e-08 | 3 |
bronchial epithelial cell | 3.19e-08 | 3 |
embryonic cell | 6.14e-08 | 250 |
epithelial cell of Malassez | 8.26e-08 | 3 |
acinar cell | 1.79e-07 | 5 |
ecto-epithelial cell | 2.25e-07 | 34 |
stratified squamous epithelial cell | 7.18e-07 | 6 |
keratin accumulating cell | 7.18e-07 | 6 |
stratified epithelial cell | 7.18e-07 | 6 |
keratinizing barrier epithelial cell | 7.18e-07 | 6 |
epithelial fate stem cell | 7.18e-07 | 6 |
stratified epithelial stem cell | 7.18e-07 | 6 |
surface ectodermal cell | 7.18e-07 | 6 |
squamous epithelial cell | 8.02e-07 | 63 |
epidermal cell | 9.17e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
urothelium | 6.48e-12 | 5 |
transitional epithelium | 7.60e-10 | 6 |
gingival epithelium | 1.42e-08 | 3 |
lower respiratory tract epithelium | 3.19e-08 | 3 |
epithelium of bronchus | 3.19e-08 | 3 |
surface structure | 1.11e-07 | 99 |