FFCP PHASE1:Hg19::chr2:71680778..71680825,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:71680778..71680825,+ to FFCP PHASE1:Hg19::chr2:71680778..71680825,+: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8291 | |EntrezGene=8291 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3097 | |HGNC=3097 | ||
|TSSclassifier=strong | |||
|UniProt=O75923 | |UniProt=O75923 | ||
|association_with_transcript=25bp_to_NM_001130976,NM_001130977,NM_001130978,NM_001130979,NM_001130980,NM_001130981,NM_003494,uc002sie.2,uc002sig.3,uc010fee.2,uc010fef.2,uc010feg.2,uc010feh.2,uc010fei.2,uc010yqx.1_5end | |||
|cluster_id=chr2:71680778..71680825,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_3_at_DYSF_5end | |||
|id=chr2:71680778..71680825,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.83e-18!42;CL:0000860!1.78e-16!45;CL:0000115!5.43e-16!35;CL:0002139!1.74e-15!24;CL:0000766!1.40e-13!76;CL:0000213!3.52e-12!57;CL:0000215!3.52e-12!57;CL:0002194!4.51e-12!63;CL:0000576!4.51e-12!63;CL:0000040!4.51e-12!63;CL:0000559!4.51e-12!63;CL:0000071!6.85e-12!18;CL:0002546!6.85e-12!18;CL:0002078!3.14e-11!44;CL:0002009!4.63e-11!65;CL:0000839!2.31e-10!70;CL:0000557!1.75e-08!71;CL:0000763!4.38e-07!112;CL:0000049!4.38e-07!112;CL:1000413!6.70e-07!9;CL:0000094!8.13e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.69e-24;33!CL:0002057;2.69e-24;33!CL:0002139;4.46e-20;24!CL:0000473;1.04e-17;39!CL:0000234;1.04e-17;39!CL:0000115;1.34e-17;36!CL:0000071;2.79e-15;18!CL:0000576;4.34e-14;48!CL:0002078;4.52e-10;45!CL:0000766;2.51e-09;69!CL:0000213;3.39e-09;58!CL:0000215;3.39e-09;58!CL:1000413;1.11e-08;9!CL:0000094;1.27e-08;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.08e-23,42;CL:0002057,1.08e-23,42;CL:0000473,8.48e-21,48;CL:0000234,8.48e-21,48;CL:0000115,1.35e-20,36;CL:0000766,3.55e-20,72;CL:0002139,4.07e-20,24;CL:0002194,3.95e-17,59;CL:0000576,3.95e-17,59;CL:0000040,3.95e-17,59;CL:0000559,3.95e-17,59;CL:0002009,4.65e-16,61;CL:0000839,1.50e-15,66;CL:0000071,2.55e-15,18;CL:0002546,2.55e-15,18;CL:0002078,5.81e-15,45;CL:0000213,1.22e-14,58;CL:0000215,1.22e-14,58;CL:0000557,2.83e-13,67;CL:0000763,2.53e-12,108;CL:0000049,2.53e-12,108;CL:1000413,1.11e-08,9;CL:0000094,1.43e-08,8;CL:0000738,4.95e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;9.80e-18;42!CL:0002546;2.79e-15;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.47e-17!216;UBERON:0007023!4.91e-16!115;UBERON:0001009!3.51e-15!113;UBERON:0004535!4.30e-14!110;UBERON:0002193!1.08e-12!112;UBERON:0001986!6.85e-12!18;UBERON:0004638!6.85e-12!18;UBERON:0004852!6.85e-12!18;UBERON:0002390!5.75e-10!102;UBERON:0003061!5.75e-10!102;UBERON:0000487!3.79e-09!22;UBERON:0000467!1.00e-08!625;UBERON:0002049!1.02e-08!79;UBERON:0007798!1.02e-08!79;UBERON:0000480!1.46e-08!626;UBERON:0000468!1.97e-08!659;UBERON:0000055!3.99e-08!69;UBERON:0004872!1.11e-07!84;UBERON:0000922!1.16e-07!612;UBERON:0004111!2.23e-07!241;UBERON:0002405!2.76e-07!115;UBERON:0006914!6.41e-07!25;UBERON:0003915!6.70e-07!9;UBERON:0004700!6.70e-07!9;UBERON:0001917!6.70e-07!9;UBERON:0000178!8.84e-07!15;UBERON:0000179!8.84e-07!15;UBERON:0000463!8.84e-07!15;UBERON:0002050!8.99e-07!605;UBERON:0005423!8.99e-07!605 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.79e-15;18!UBERON:0001986;2.79e-15;18!UBERON:0004852;2.79e-15;18!UBERON:0000487;1.49e-12;22!UBERON:0006914;3.59e-10;25!UBERON:0003915;1.11e-08;9!UBERON:0004700;1.11e-08;9!UBERON:0001917;1.11e-08;9!UBERON:0000178;1.34e-08;15!UBERON:0000179;1.34e-08;15!UBERON:0000463;1.34e-08;15!UBERON:0000490;4.40e-08;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,1.35e-21,203;UBERON:0002193,3.51e-18,108;UBERON:0004638,2.55e-15,18;UBERON:0001986,2.55e-15,18;UBERON:0004852,2.55e-15,18;UBERON:0002390,3.43e-15,98;UBERON:0003061,3.43e-15,98;UBERON:0000926,1.62e-14,315;UBERON:0004120,1.62e-14,315;UBERON:0006603,1.62e-14,315;UBERON:0001009,6.52e-13,112;UBERON:0000487,1.40e-12,22;UBERON:0002405,3.46e-12,93;UBERON:0004535,1.07e-11,109;UBERON:0006914,3.41e-10,25;UBERON:0002371,4.89e-10,76;UBERON:0007023,2.72e-09,114;UBERON:0003915,1.11e-08,9;UBERON:0004700,1.11e-08,9;UBERON:0001917,1.11e-08,9;UBERON:0000178,1.35e-08,15;UBERON:0000179,1.35e-08,15;UBERON:0000463,1.35e-08,15;UBERON:0001474,2.38e-08,82;UBERON:0004765,2.87e-08,90 | |||
|phase1_expression=0,0.214100523890983,0.281908808191942,0,0.446961094427288,0,0,0,0,0,0,14.4171305605914,2.37390280405608,0,0,2.01697543935533,0.602694528023977,2.19093027116212,0.487932798790507,1.10808952269109,0.612002073732759,2.5076377718247,0,0,0.251085279189606,0,0,0,11.0141997517693,9.21190555433311,7.27635779585557,0,0.30120591877825,1.84877005083394,0,0,0.293600439334847,14.9578760303607,10.0272223735071,12.1526087600877,0.895661896959697,2.26725566213286,4.12120908214698,19.1925675189025,3.02300754951048,12.6143711817664,19.9888971738889,6.16751832032739,10.8397229813286,28.4815468398929,10.246428261164,13.2430048737608,29.6481285433492,10.3277549373412,20.3139729891513,20.1419303310587,8.46009065179322,7.86532195557796,22.038040250705,7.70229664982625,9.59005688698562,29.026914416431,7.77908264724364,16.1965405202424,30.7621792946299,10.2129340444405,9.9651559839292,23.8686231993906,9.38669253156363,16.0719745081786,21.1889825921679,11.7848843516021,10.4432587855492,0,0,1.25795187305026,11.569849008089,7.95937532059983,26.6804473917153,0,0.19891667719909,0.182664153764634,0,2.18455444504853,0,4.26730222566507,0,0,3.30522436392431,0,0,0,0,0,1.68152568894461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0.318565414324097,0,0,1.20460095262218,0.127986611154418,1.24930726552346,3.07810427657222,1.64225599384209,0,0,0,0,1.34140171940727,0.12786256184353,0,0,0.144846518960824,0,0,0.283604451492204,0.665188192387692,0.614843499851882,0.654895377488563,0.728590576585084,0.370784442784429,0.97364218096405,2.43781632218974,1.46253756570752,0,0,0,29.0193114755389,14.6239881168041,39.2268766816582,14.1326985481002,15.5214791397665,7.42818713238182,7.9418087283988,18.089173141853,15.2979492955285,18.7443543148215,53.1734698584074,21.2876189601184,54.9139629483381,33.0896772311282,10.5318453224629,6.78677934959006,4.71511682514957,5.85579698513276,7.66583187329416,20.8838445104988,16.6713586976671,220.073297118226,438.191698487608,0.872188104285069,0.496971951695318,0.12663051166458,0.662045904066094,0.286836620748814,0.709336764396714,1.12135520028461,2.1349799145941,5.67335361359468,0.622422070799533,1.34710672069688,1.63461903113459,2.57307626996383,1.15235184896,0,0,2.85235910772225,0,0,0,0,0.408308342509787,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0.340296549480063,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0.10075209822764,0,12.9484771619409,7.9096374971342,2.00763216772303,0.853815942907168,0.795178609928912,0.813357600086629,1.34759371519982,1.26160425437814,0.72995471815166,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,16.9775754563669,14.0241773803446,0,1.47008711385542,7.60530208930985,14.7424082501644,1.77236972004421,0,0.860919069801795,1.71567810298526,0.548751427043128,2.24803506515239,0.201057944823262,0.462942225792648,0,0,2.88662684050547,0,1.29149563659404,18.3345388656564,8.7967247389556,15.6008404832371,0,0,0,0,0.148631162288728,8.43604505880993,8.39910640994298,6.52165447314978,1.52249488594842,0.290633938513962,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,3.1396703616701,1.74384027533312,0.4400297149257,0.775630294546667,0,1.690605505112,0,0,0,0,0,0,0,0,0.65147236858747,0,0,1.80863626235752,6.97226766880235,0.299918973546171,2.43247561282381,1.00451418286425,0,0,0,0,1.73737568001095,0,3.22309733831812,0,0.394061520403854,0,0.641715181398742,0,0,0,0,0,373.005497925697,472.675105542359,934.092567284824,0,0,0,2.07970861530807,0.356857977594324,0.315404830067869,0.35142424497814,0.300946099727719,0,1.03473071292505,0,0,0,0.783204629850962,14.7551672238668,7.23688091430106,11.2171384425681,2.77491650288955,0,1.66435439510497,0.604780586659361,0.248107807818777,0.920771839728375,0,0.896974044789907,0.511707249066704,0,0,0,0,0,0,0,0,14.8374788024431,0.0920809889358963,0.114814448164607,0.182091168006717,0,0,0.231046011313244,1.56869953835371,4.38417673959782,0.527758144464379,19.3346752920524,13.9476838326743,6.90930931526846,1.54227252690289,5.41892875087706,5.51858751240339,0,0,3.58199607555485,4.60445740956463,6.27445082459761,0,0,0,21.9477354809648,0,0,8.03971753194641,1.30012049207304,0,7.34697459020127,0.770243085573222,1.99554777143968,5.51346289938122,0,1.0151168573996,5.53973078204656,13.2657733113639,4.62797763010739,0.192190067365106,0.382838137483752,0.50578890427775,0,0.31481234683064,1.3940745403212,0.924100740528266,0.532306030317022,0,0,0,3.72158369359667,0,0.571890581771475,0,0,0,0.78494864019923,0,0,0,0.808729926293264,1.58510321173008,1.26377536871694,0,0.243713489631284,0,0,0,0,0,0,0,0.578775534266688,0,0.608731130888112,0.30982349809975,0.563391205064483,0,0,0,0,0,0,0,0.349934720244983,1.15466535270614,1.34060455107157,2.17781969722645,21.4647865771056,3.01353760869861,0,1.33029046061003,1.37834040124176,75.1022461663611,71.1112602642409,78.0416646428603,42.4052560314864,66.6406882399635,95.9740500565222,65.3438039058119,70.5881406901901,0,0,1.71528151186722,0,0,0,0,0,0,7.4085753953359,0.649243880549111,0,0.228234679033192,0,0,0,0,0,7.66523227842587,0,0,0,0,1.5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| |phase1_expression=0,0.214100523890983,0.281908808191942,0,0.446961094427288,0,0,0,0,0,0,14.4171305605914,2.37390280405608,0,0,2.01697543935533,0.602694528023977,2.19093027116212,0.487932798790507,1.10808952269109,0.612002073732759,2.5076377718247,0,0,0.251085279189606,0,0,0,11.0141997517693,9.21190555433311,7.27635779585557,0,0.30120591877825,1.84877005083394,0,0,0.293600439334847,14.9578760303607,10.0272223735071,12.1526087600877,0.895661896959697,2.26725566213286,4.12120908214698,19.1925675189025,3.02300754951048,12.6143711817664,19.9888971738889,6.16751832032739,10.8397229813286,28.4815468398929,10.246428261164,13.2430048737608,29.6481285433492,10.3277549373412,20.3139729891513,20.1419303310587,8.46009065179322,7.86532195557796,22.038040250705,7.70229664982625,9.59005688698562,29.026914416431,7.77908264724364,16.1965405202424,30.7621792946299,10.2129340444405,9.9651559839292,23.8686231993906,9.38669253156363,16.0719745081786,21.1889825921679,11.7848843516021,10.4432587855492,0,0,1.25795187305026,11.569849008089,7.95937532059983,26.6804473917153,0,0.19891667719909,0.182664153764634,0,2.18455444504853,0,4.26730222566507,0,0,3.30522436392431,0,0,0,0,0,1.68152568894461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0.318565414324097,0,0,1.20460095262218,0.127986611154418,1.24930726552346,3.07810427657222,1.64225599384209,0,0,0,0,1.34140171940727,0.12786256184353,0,0,0.144846518960824,0,0,0.283604451492204,0.665188192387692,0.614843499851882,0.654895377488563,0.728590576585084,0.370784442784429,0.97364218096405,2.43781632218974,1.46253756570752,0,0,0,29.0193114755389,14.6239881168041,39.2268766816582,14.1326985481002,15.5214791397665,7.42818713238182,7.9418087283988,18.089173141853,15.2979492955285,18.7443543148215,53.1734698584074,21.2876189601184,54.9139629483381,33.0896772311282,10.5318453224629,6.78677934959006,4.71511682514957,5.85579698513276,7.66583187329416,20.8838445104988,16.6713586976671,220.073297118226,438.191698487608,0.872188104285069,0.496971951695318,0.12663051166458,0.662045904066094,0.286836620748814,0.709336764396714,1.12135520028461,2.1349799145941,5.67335361359468,0.622422070799533,1.34710672069688,1.63461903113459,2.57307626996383,1.15235184896,0,0,2.85235910772225,0,0,0,0,0.408308342509787,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0.340296549480063,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0.10075209822764,0,12.9484771619409,7.9096374971342,2.00763216772303,0.853815942907168,0.795178609928912,0.813357600086629,1.34759371519982,1.26160425437814,0.72995471815166,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,16.9775754563669,14.0241773803446,0,1.47008711385542,7.60530208930985,14.7424082501644,1.77236972004421,0,0.860919069801795,1.71567810298526,0.548751427043128,2.24803506515239,0.201057944823262,0.462942225792648,0,0,2.88662684050547,0,1.29149563659404,18.3345388656564,8.7967247389556,15.6008404832371,0,0,0,0,0.148631162288728,8.43604505880993,8.39910640994298,6.52165447314978,1.52249488594842,0.290633938513962,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,3.1396703616701,1.74384027533312,0.4400297149257,0.775630294546667,0,1.690605505112,0,0,0,0,0,0,0,0,0.65147236858747,0,0,1.80863626235752,6.97226766880235,0.299918973546171,2.43247561282381,1.00451418286425,0,0,0,0,1.73737568001095,0,3.22309733831812,0,0.394061520403854,0,0.641715181398742,0,0,0,0,0,373.005497925697,472.675105542359,934.092567284824,0,0,0,2.07970861530807,0.356857977594324,0.315404830067869,0.35142424497814,0.300946099727719,0,1.03473071292505,0,0,0,0.783204629850962,14.7551672238668,7.23688091430106,11.2171384425681,2.77491650288955,0,1.66435439510497,0.604780586659361,0.248107807818777,0.920771839728375,0,0.896974044789907,0.511707249066704,0,0,0,0,0,0,0,0,14.8374788024431,0.0920809889358963,0.114814448164607,0.182091168006717,0,0,0.231046011313244,1.56869953835371,4.38417673959782,0.527758144464379,19.3346752920524,13.9476838326743,6.90930931526846,1.54227252690289,5.41892875087706,5.51858751240339,0,0,3.58199607555485,4.60445740956463,6.27445082459761,0,0,0,21.9477354809648,0,0,8.03971753194641,1.30012049207304,0,7.34697459020127,0.770243085573222,1.99554777143968,5.51346289938122,0,1.0151168573996,5.53973078204656,13.2657733113639,4.62797763010739,0.192190067365106,0.382838137483752,0.50578890427775,0,0.31481234683064,1.3940745403212,0.924100740528266,0.532306030317022,0,0,0,3.72158369359667,0,0.571890581771475,0,0,0,0.78494864019923,0,0,0,0.808729926293264,1.58510321173008,1.26377536871694,0,0.243713489631284,0,0,0,0,0,0,0,0.578775534266688,0,0.608731130888112,0.30982349809975,0.563391205064483,0,0,0,0,0,0,0,0.349934720244983,1.15466535270614,1.34060455107157,2.17781969722645,21.4647865771056,3.01353760869861,0,1.33029046061003,1.37834040124176,75.1022461663611,71.1112602642409,78.0416646428603,42.4052560314864,66.6406882399635,95.9740500565222,65.3438039058119,70.5881406901901,0,0,1.71528151186722,0,0,0,0,0,0,7.4085753953359,0.649243880549111,0,0.228234679033192,0,0,0,0,0,7.66523227842587,0,0,0,0,1.5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| ||
|short_description=p3@DYSF | |||
}} | }} |
Latest revision as of 07:58, 18 September 2015
Short description: | p3@DYSF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_DYSF_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 25bp_to_NM_001130976, NM_001130977, NM_001130978, NM_001130979, NM_001130980, NM_001130981, NM_003494, uc002sie.2, uc002sig.3, uc010fee.2, uc010fef.2, uc010feg.2, uc010feh.2, uc010fei.2, uc010yqx.1_5end |
EntrezGene: | DYSF |
HGNC: | 3097 |
UniProt: | O75923 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.08e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.08e-23 | 42 |
defensive cell | 8.48e-21 | 48 |
phagocyte | 8.48e-21 | 48 |
endothelial cell | 1.35e-20 | 36 |
myeloid leukocyte | 3.55e-20 | 72 |
endothelial cell of vascular tree | 4.07e-20 | 24 |
monopoietic cell | 3.95e-17 | 59 |
monocyte | 3.95e-17 | 59 |
monoblast | 3.95e-17 | 59 |
promonocyte | 3.95e-17 | 59 |
macrophage dendritic cell progenitor | 4.65e-16 | 61 |
myeloid lineage restricted progenitor cell | 1.50e-15 | 66 |
blood vessel endothelial cell | 2.55e-15 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.55e-15 | 18 |
meso-epithelial cell | 5.81e-15 | 45 |
lining cell | 1.22e-14 | 58 |
barrier cell | 1.22e-14 | 58 |
granulocyte monocyte progenitor cell | 2.83e-13 | 67 |
myeloid cell | 2.53e-12 | 108 |
common myeloid progenitor | 2.53e-12 | 108 |
endothelial cell of artery | 1.11e-08 | 9 |
granulocyte | 1.43e-08 | 8 |
leukocyte | 4.95e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 1.35e-21 | 203 |
hemolymphoid system | 3.51e-18 | 108 |
blood vessel endothelium | 2.55e-15 | 18 |
endothelium | 2.55e-15 | 18 |
cardiovascular system endothelium | 2.55e-15 | 18 |
hematopoietic system | 3.43e-15 | 98 |
blood island | 3.43e-15 | 98 |
mesoderm | 1.62e-14 | 315 |
mesoderm-derived structure | 1.62e-14 | 315 |
presumptive mesoderm | 1.62e-14 | 315 |
circulatory system | 6.52e-13 | 112 |
simple squamous epithelium | 1.40e-12 | 22 |
immune system | 3.46e-12 | 93 |
cardiovascular system | 1.07e-11 | 109 |
squamous epithelium | 3.41e-10 | 25 |
bone marrow | 4.89e-10 | 76 |
adult organism | 2.72e-09 | 114 |
endothelial tube | 1.11e-08 | 9 |
arterial system endothelium | 1.11e-08 | 9 |
endothelium of artery | 1.11e-08 | 9 |
blood | 1.35e-08 | 15 |
haemolymphatic fluid | 1.35e-08 | 15 |
organism substance | 1.35e-08 | 15 |
bone element | 2.38e-08 | 82 |
skeletal element | 2.87e-08 | 90 |