FFCP PHASE1:Hg19::chr3:159481950..159481971,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:159481950..159481971,+ to FFCP PHASE1:Hg19::chr3:159481950..159481971,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=29970 | |EntrezGene=29970 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15678 | |HGNC=15678 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=20bp_to_uc010hvz.1_5end | |||
|cluster_id=chr3:159481950..159481971,+ | |||
|description=CAGE_peak_3_at_SCHIP1_5end | |||
|id=chr3:159481950..159481971,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.95e-16!254;CL:0000076!6.08e-16!62;CL:0000220!9.51e-15!246;CL:0002321!2.02e-14!248;CL:0000222!1.74e-13!119;CL:0000213!7.62e-12!57;CL:0000215!7.62e-12!57;CL:0000077!1.91e-08!19;CL:0002139!2.16e-08!24;CL:0000071!3.28e-07!18;CL:0002546!3.28e-07!18;CL:0002078!3.79e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:0000077;4.27e-09;19!CL:0002139;5.75e-09;24!CL:0000076;1.95e-08;63!CL:0000071;4.61e-08;18!CL:0000213;1.63e-07;58!CL:0000215;1.63e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000076,5.01e-16,63;CL:0000066,7.29e-15,253;CL:0000213,6.93e-13,58;CL:0000215,6.93e-13,58;CL:0000222,6.65e-12,121;CL:0002321,8.75e-12,250;CL:0000077,4.30e-09,19;CL:0002139,1.11e-08,24;CL:0002078,9.26e-08,45;CL:0000071,9.61e-08,18;CL:0002546,9.61e-08,18;CL:0000115,7.23e-07,36 | |||
|ontology_enrichment_development_v019=CL:0002546;4.61e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000477!9.58e-15!286;UBERON:0000119!4.29e-14!312;UBERON:0000467!1.54e-13!625;UBERON:0000483!1.64e-13!309;UBERON:0000480!2.92e-13!626;UBERON:0000468!5.00e-13!659;UBERON:0000481!7.42e-13!347;UBERON:0000475!4.51e-12!365;UBERON:0004111!5.01e-12!241;UBERON:0000064!2.54e-11!219;UBERON:0002049!4.22e-11!79;UBERON:0007798!4.22e-11!79;UBERON:0000025!1.83e-10!194;UBERON:0004872!3.96e-10!84;UBERON:0000055!5.10e-09!69;UBERON:0003914!5.93e-09!118;UBERON:0002050!1.05e-08!605;UBERON:0005423!1.05e-08!605;UBERON:0001981!1.09e-08!60;UBERON:0007500!1.09e-08!60;UBERON:0004537!1.09e-08!60;UBERON:0006965!1.09e-08!60;UBERON:0000923!1.24e-08!604;UBERON:0005291!1.24e-08!604;UBERON:0006598!1.24e-08!604;UBERON:0002532!1.24e-08!604;UBERON:0000487!2.89e-08!22;UBERON:0000922!2.99e-08!612;UBERON:0000062!8.37e-08!511;UBERON:0003104!1.06e-07!238;UBERON:0009142!1.06e-07!238;UBERON:0002100!2.07e-07!216;UBERON:0006914!2.22e-07!25;UBERON:0000490!2.70e-07!138;UBERON:0001986!3.28e-07!18;UBERON:0004638!3.28e-07!18;UBERON:0004852!3.28e-07!18;UBERON:0004535!4.67e-07!110;UBERON:0001009!4.81e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0000490;1.41e-09;33!UBERON:0000487;7.20e-09;22!UBERON:0004638;4.61e-08;18!UBERON:0001986;4.61e-08;18!UBERON:0004852;4.61e-08;18!UBERON:0006914;1.78e-07;25!UBERON:0000489;4.81e-07;29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,5.02e-12,309;UBERON:0000483,1.84e-11,306;UBERON:0004111,2.13e-10,240;UBERON:0000025,1.49e-09,192;UBERON:0002049,4.66e-09,78;UBERON:0007798,4.66e-09,78;UBERON:0004872,1.52e-08,83;UBERON:0000487,1.71e-08,22;UBERON:0003914,5.36e-08,117;UBERON:0004638,9.61e-08,18;UBERON:0001986,9.61e-08,18;UBERON:0004852,9.61e-08,18;UBERON:0007500,2.82e-07,59;UBERON:0001981,2.82e-07,59;UBERON:0004537,2.82e-07,59;UBERON:0006965,2.82e-07,59;UBERON:0006914,3.04e-07,25;UBERON:0000055,3.31e-07,68;UBERON:0010314,5.71e-07,132;UBERON:0000489,5.79e-07,31 | |||
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| ||
|short_description=p3@SCHIP1 | |||
}} | }} |
Latest revision as of 09:30, 16 September 2015
Short description: | p3@SCHIP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SCHIP1_5end |
Coexpression cluster: | NA |
Association with transcript: | 20bp_to_uc010hvz.1_5end |
EntrezGene: | SCHIP1 |
HGNC: | 15678 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
squamous epithelial cell | 5.01e-16 | 63 |
epithelial cell | 7.29e-15 | 253 |
lining cell | 6.93e-13 | 58 |
barrier cell | 6.93e-13 | 58 |
mesodermal cell | 6.65e-12 | 121 |
embryonic cell | 8.75e-12 | 250 |
mesothelial cell | 4.30e-09 | 19 |
endothelial cell of vascular tree | 1.11e-08 | 24 |
meso-epithelial cell | 9.26e-08 | 45 |
blood vessel endothelial cell | 9.61e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 9.61e-08 | 18 |
endothelial cell | 7.23e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
cell layer | 5.02e-12 | 309 |
epithelium | 1.84e-11 | 306 |
anatomical conduit | 2.13e-10 | 240 |
tube | 1.49e-09 | 192 |
vasculature | 4.66e-09 | 78 |
vascular system | 4.66e-09 | 78 |
splanchnic layer of lateral plate mesoderm | 1.52e-08 | 83 |
simple squamous epithelium | 1.71e-08 | 22 |
epithelial tube | 5.36e-08 | 117 |
blood vessel endothelium | 9.61e-08 | 18 |
endothelium | 9.61e-08 | 18 |
cardiovascular system endothelium | 9.61e-08 | 18 |
epithelial tube open at both ends | 2.82e-07 | 59 |
blood vessel | 2.82e-07 | 59 |
blood vasculature | 2.82e-07 | 59 |
vascular cord | 2.82e-07 | 59 |
squamous epithelium | 3.04e-07 | 25 |
vessel | 3.31e-07 | 68 |
structure with developmental contribution from neural crest | 5.71e-07 | 132 |
cavitated compound organ | 5.79e-07 | 31 |