FFCP PHASE1:Hg19::chr3:52312636..52312673,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:52312636..52312673,- to FFCP PHASE1:Hg19::chr3:52312636..52312673,-: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=80335 | |EntrezGene=80335 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28826 | |HGNC=28826 | ||
|TSSclassifier=strong | |||
|UniProt=Q6UXN9 | |UniProt=Q6UXN9 | ||
|association_with_transcript=0bp_to_ENST00000296490,NM_025222,uc003ddl.2_5end | |||
|cluster_id=chr3:52312636..52312673,- | |||
|description=CAGE_peak_1_at_WDR82_5end | |||
|id=chr3:52312636..52312673,- | |||
|ontology_enrichment_celltype=CL:0000738!2.52e-19!140;CL:0000037!1.82e-17!172;CL:0000566!1.82e-17!172;CL:0000988!4.93e-17!182;CL:0002032!2.08e-15!165;CL:0000837!2.08e-15!165;CL:0002031!4.49e-14!124;CL:0002087!6.35e-14!119;CL:0002057!7.48e-10!42;CL:0000838!8.35e-10!52;CL:0000791!1.04e-09!18;CL:0000789!1.04e-09!18;CL:0002420!1.04e-09!18;CL:0002419!1.04e-09!18;CL:0000790!1.04e-09!18;CL:0000084!1.11e-09!25;CL:0000827!1.11e-09!25;CL:0000860!4.25e-09!45;CL:0000542!4.92e-09!53;CL:0000051!4.92e-09!53;CL:0000766!2.03e-08!76;CL:0000763!1.63e-07!112;CL:0000049!1.63e-07!112;CL:0000625!3.01e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.74e-11;33!CL:0002057;4.74e-11;33!CL:0000791;1.02e-09;18!CL:0000789;1.02e-09;18!CL:0002419;1.02e-09;18!CL:0000084;1.11e-09;25!CL:0000625;3.01e-07;11!CL:0000473;3.63e-07;39!CL:0000234;3.63e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.32e-20,136;CL:0000037,2.75e-18,168;CL:0000988,3.95e-18,177;CL:0002032,3.52e-16,161;CL:0000837,3.52e-16,161;CL:0002031,5.76e-15,120;CL:0002087,7.76e-15,115;CL:0000860,7.48e-10,42;CL:0002057,7.48e-10,42;CL:0000838,8.35e-10,52;CL:0000791,1.04e-09,18;CL:0000789,1.04e-09,18;CL:0002420,1.04e-09,18;CL:0002419,1.04e-09,18;CL:0000790,1.04e-09,18;CL:0000084,1.11e-09,25;CL:0000827,1.11e-09,25;CL:0000766,2.82e-09,72;CL:0000542,4.92e-09,53;CL:0000051,4.92e-09,53;CL:0000763,4.19e-08,108;CL:0000049,4.19e-08,108;CL:0000473,1.38e-07,48;CL:0000234,1.38e-07,48;CL:0000625,3.01e-07,11;CL:0000557,4.72e-07,67 | |||
|ontology_enrichment_development_v019=CL:0000790;1.02e-09;18!CL:0002057;5.80e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.01e-22!115;UBERON:0001017!1.18e-14!82;UBERON:0005743!2.01e-14!86;UBERON:0000073!8.42e-14!94;UBERON:0001016!8.42e-14!94;UBERON:0001049!9.41e-14!57;UBERON:0005068!9.41e-14!57;UBERON:0006241!9.41e-14!57;UBERON:0007135!9.41e-14!57;UBERON:0000955!5.27e-12!69;UBERON:0006238!5.27e-12!69;UBERON:0003075!7.41e-12!86;UBERON:0007284!7.41e-12!86;UBERON:0002616!8.09e-12!59;UBERON:0001869!1.52e-11!32;UBERON:0001893!1.91e-11!34;UBERON:0003080!2.03e-11!42;UBERON:0002780!3.28e-11!41;UBERON:0001890!3.28e-11!41;UBERON:0006240!3.28e-11!41;UBERON:0002020!3.58e-11!34;UBERON:0003528!3.58e-11!34;UBERON:0002791!4.72e-11!33;UBERON:0002346!7.88e-11!90;UBERON:0003056!3.88e-10!61;UBERON:0000956!4.27e-10!25;UBERON:0000203!4.27e-10!25;UBERON:0002619!1.37e-09!22;UBERON:0001950!2.24e-09!20;UBERON:0002390!6.75e-09!102;UBERON:0003061!6.75e-09!102;UBERON:0004121!7.21e-09!169;UBERON:0000153!2.08e-08!129;UBERON:0007811!2.08e-08!129;UBERON:0002193!2.33e-08!112;UBERON:0000924!2.48e-08!173;UBERON:0006601!2.48e-08!173;UBERON:0000033!2.54e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.92e-10;32!UBERON:0002791;4.02e-10;32!UBERON:0000956;4.25e-10;25!UBERON:0000203;4.25e-10;25!UBERON:0001893;4.57e-10;34!UBERON:0003528;7.94e-10;34!UBERON:0002020;7.94e-10;34!UBERON:0002619;1.39e-09;22!UBERON:0001950;2.21e-09;20!UBERON:0002780;3.32e-08;41!UBERON:0001890;3.32e-08;41!UBERON:0000073;4.69e-08;53!UBERON:0002616;4.69e-08;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.93e-21,114;UBERON:0001017,1.95e-14,81;UBERON:0001016,9.31e-14,89;UBERON:0000073,1.46e-13,53;UBERON:0002616,1.46e-13,53;UBERON:0001049,1.55e-13,56;UBERON:0005068,1.55e-13,56;UBERON:0006241,1.55e-13,56;UBERON:0007135,1.55e-13,56;UBERON:0003075,1.99e-12,82;UBERON:0007284,1.99e-12,82;UBERON:0000955,8.60e-12,68;UBERON:0006238,8.60e-12,68;UBERON:0001869,1.52e-11,32;UBERON:0001893,1.91e-11,34;UBERON:0002346,2.50e-11,86;UBERON:0002780,3.28e-11,41;UBERON:0001890,3.28e-11,41;UBERON:0003080,3.28e-11,41;UBERON:0006240,3.28e-11,41;UBERON:0003528,3.58e-11,34;UBERON:0002020,3.58e-11,34;UBERON:0002791,4.46e-11,32;UBERON:0003056,4.03e-10,61;UBERON:0000956,4.27e-10,25;UBERON:0000203,4.27e-10,25;UBERON:0002390,1.28e-09,98;UBERON:0003061,1.28e-09,98;UBERON:0002619,1.37e-09,22;UBERON:0001950,2.24e-09,20;UBERON:0010371,5.28e-09,104;UBERON:0002193,5.31e-09,108;UBERON:0004121,1.56e-08,171;UBERON:0000924,1.56e-08,171;UBERON:0006601,1.56e-08,171 | |||
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| ||
|short_description=p1@WDR82 | |||
}} | }} |
Latest revision as of 23:14, 18 September 2015
Short description: | p1@WDR82 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_WDR82_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000296490, NM_025222, uc003ddl.2_5end |
EntrezGene: | WDR82 |
HGNC: | 28826 |
UniProt: | Q6UXN9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.32e-20 | 136 |
hematopoietic stem cell | 2.75e-18 | 168 |
hematopoietic cell | 3.95e-18 | 177 |
hematopoietic oligopotent progenitor cell | 3.52e-16 | 161 |
hematopoietic multipotent progenitor cell | 3.52e-16 | 161 |
hematopoietic lineage restricted progenitor cell | 5.76e-15 | 120 |
nongranular leukocyte | 7.76e-15 | 115 |
classical monocyte | 7.48e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.48e-10 | 42 |
lymphoid lineage restricted progenitor cell | 8.35e-10 | 52 |
mature alpha-beta T cell | 1.04e-09 | 18 |
alpha-beta T cell | 1.04e-09 | 18 |
immature T cell | 1.04e-09 | 18 |
mature T cell | 1.04e-09 | 18 |
immature alpha-beta T cell | 1.04e-09 | 18 |
T cell | 1.11e-09 | 25 |
pro-T cell | 1.11e-09 | 25 |
myeloid leukocyte | 2.82e-09 | 72 |
lymphocyte | 4.92e-09 | 53 |
common lymphoid progenitor | 4.92e-09 | 53 |
myeloid cell | 4.19e-08 | 108 |
common myeloid progenitor | 4.19e-08 | 108 |
defensive cell | 1.38e-07 | 48 |
phagocyte | 1.38e-07 | 48 |
CD8-positive, alpha-beta T cell | 3.01e-07 | 11 |
granulocyte monocyte progenitor cell | 4.72e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.93e-21 | 114 |
central nervous system | 1.95e-14 | 81 |
nervous system | 9.31e-14 | 89 |
regional part of nervous system | 1.46e-13 | 53 |
regional part of brain | 1.46e-13 | 53 |
neural tube | 1.55e-13 | 56 |
neural rod | 1.55e-13 | 56 |
future spinal cord | 1.55e-13 | 56 |
neural keel | 1.55e-13 | 56 |
neural plate | 1.99e-12 | 82 |
presumptive neural plate | 1.99e-12 | 82 |
brain | 8.60e-12 | 68 |
future brain | 8.60e-12 | 68 |
cerebral hemisphere | 1.52e-11 | 32 |
telencephalon | 1.91e-11 | 34 |
neurectoderm | 2.50e-11 | 86 |
regional part of forebrain | 3.28e-11 | 41 |
forebrain | 3.28e-11 | 41 |
anterior neural tube | 3.28e-11 | 41 |
future forebrain | 3.28e-11 | 41 |
brain grey matter | 3.58e-11 | 34 |
gray matter | 3.58e-11 | 34 |
regional part of telencephalon | 4.46e-11 | 32 |
pre-chordal neural plate | 4.03e-10 | 61 |
cerebral cortex | 4.27e-10 | 25 |
pallium | 4.27e-10 | 25 |
hematopoietic system | 1.28e-09 | 98 |
blood island | 1.28e-09 | 98 |
regional part of cerebral cortex | 1.37e-09 | 22 |
neocortex | 2.24e-09 | 20 |
ecto-epithelium | 5.28e-09 | 104 |
hemolymphoid system | 5.31e-09 | 108 |
ectoderm-derived structure | 1.56e-08 | 171 |
ectoderm | 1.56e-08 | 171 |
presumptive ectoderm | 1.56e-08 | 171 |