FFCP PHASE1:Hg19::chr4:40631838..40631856,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:40631838..40631856,- to FFCP PHASE1:Hg19::chr4:40631838..40631856,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54502 | |EntrezGene=54502 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30358 | |HGNC=30358 | ||
|TSSclassifier=strong | |||
|UniProt=A0AV96,D6R9D6 | |UniProt=A0AV96,D6R9D6 | ||
|association_with_transcript=24bp_to_ENST00000295971,ENST00000510871_5end | |||
|cluster_id=chr4:40631838..40631856,- | |||
|coexpression_cluster_id=C4411 | |||
|description=CAGE_peak_3_at_RBM47_5end | |||
|id=chr4:40631838..40631856,- | |||
|ontology_enrichment_celltype=CL:0000766!7.74e-28!76;CL:0002009!5.01e-27!65;CL:0002194!6.91e-26!63;CL:0000576!6.91e-26!63;CL:0000040!6.91e-26!63;CL:0000559!6.91e-26!63;CL:0000557!1.63e-25!71;CL:0000839!1.55e-23!70;CL:0000860!6.32e-23!45;CL:0002057!9.87e-23!42;CL:0000763!6.29e-14!112;CL:0000049!6.29e-14!112;CL:0000738!2.38e-10!140;CL:0002031!1.29e-07!124;CL:0002087!1.31e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.87e-26;33!CL:0002057;2.87e-26;33!CL:0000473;5.21e-26;39!CL:0000234;5.21e-26;39!CL:0000576;8.78e-19;48!CL:0000766;1.82e-14;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,1.62e-33,61;CL:0000766,2.09e-33,72;CL:0000473,6.24e-33,48;CL:0000234,6.24e-33,48;CL:0000557,4.46e-32,67;CL:0002194,5.92e-32,59;CL:0000576,5.92e-32,59;CL:0000040,5.92e-32,59;CL:0000559,5.92e-32,59;CL:0000839,9.59e-30,66;CL:0000860,4.81e-28,42;CL:0002057,4.81e-28,42;CL:0000763,1.46e-19,108;CL:0000049,1.46e-19,108;CL:0000738,7.83e-15,136;CL:0002031,2.98e-12,120;CL:0002087,2.15e-11,115;CL:0002032,7.63e-09,161;CL:0000837,7.63e-09,161;CL:0000037,2.48e-08,168;CL:0000988,3.19e-07,177;CL:0000223,9.41e-07,58 | |||
|ontology_enrichment_development_v019=CL:0002057;8.66e-21;42 | |||
|ontology_enrichment_disease=DOID:305!5.44e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.51e-21!102;UBERON:0003061!3.51e-21!102;UBERON:0002371!6.11e-21!80;UBERON:0001474!1.33e-20!86;UBERON:0002193!5.12e-18!112;UBERON:0004765!1.00e-15!101;UBERON:0001434!1.00e-15!101;UBERON:0002405!1.14e-15!115;UBERON:0000062!6.38e-15!511;UBERON:0000922!7.74e-09!612;UBERON:0002050!1.36e-08!605;UBERON:0005423!1.36e-08!605;UBERON:0000467!1.45e-08!625;UBERON:0004119!1.71e-08!169;UBERON:0000925!1.71e-08!169;UBERON:0006595!1.71e-08!169;UBERON:0000468!1.76e-08!659;UBERON:0000926!2.16e-08!448;UBERON:0004120!2.16e-08!448;UBERON:0006603!2.16e-08!448;UBERON:0000480!2.19e-08!626;UBERON:0000923!2.33e-08!604;UBERON:0005291!2.33e-08!604;UBERON:0006598!2.33e-08!604;UBERON:0002532!2.33e-08!604;UBERON:0001007!1.37e-07!155;UBERON:0001555!1.37e-07!155;UBERON:0007026!1.37e-07!155 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,7.41e-27,98;UBERON:0003061,7.41e-27,98;UBERON:0002371,1.44e-25,76;UBERON:0002193,4.09e-24,108;UBERON:0001474,5.29e-23,82;UBERON:0002405,1.49e-22,93;UBERON:0004765,1.05e-19,90;UBERON:0001434,1.22e-15,100;UBERON:0004119,8.17e-10,160;UBERON:0000925,8.17e-10,160;UBERON:0006595,8.17e-10,160;UBERON:0001007,6.39e-09,145;UBERON:0001555,6.39e-09,145;UBERON:0007026,6.39e-09,145;UBERON:0004921,1.74e-08,118 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,1.47440361900905,2.09340350391728,0.436882744260345,1.31883489114227,0,0,0,0.602694528023977,0,0.487932798790507,0.246242116153576,0.408001382488506,0,0,0.136874425072884,0,2.52164238968239,2.05251473624864,1.81034797021462,0.393364276848904,0.767658796194425,1.08371286321253,1.83884244895785,0.90361775633475,1.10926203050036,0,0,0,4.9859586767869,3.20871115952227,5.20826089718044,13.2110129801555,8.74512898251245,11.3333249759042,4.50734540216651,7.55751887377619,6.0646015296954,5.57829688573643,11.5127008646111,9.29119112685311,17.261543539329,14.3449995656296,18.9185783910868,6.20542225325913,9.68227025375739,5.41705946377367,6.21199720490596,6.5497476013883,4.71919317334678,6.73384563215986,8.98601275813062,11.5080682643827,13.5239033076554,16.3560199249738,18.3276642729058,6.38460324982885,7.37600792098482,11.8336227309159,16.5824119069451,15.1230046341858,14.1172749058326,7.26479403160043,7.73383035573886,8.22802207346299,2.32380814943136,2.97646019951061,1.67726916406701,2.02191536063691,2.10247649978109,3.2145117339416,0.570025487482497,0.99458338599545,0.547992461293902,0,0.546138611262131,0,0,0.400395987036012,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0.222820913770347,0,0,0,0.128091319725675,0.390178042679635,0,0.276350017785848,0,0,0.267540828089713,0,0.793165398882963,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0.50133791063589,0,0,0,0.472674085820339,0.443458794925128,0.87834785693126,2.29213382120997,2.5500670180478,3.70784442784429,4.54366351116557,6.26867054277362,5.45127638127347,0,0,0.371457501329565,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,11.6334079244498,1.74437620857014,0,0.12663051166458,0.529636723252875,0,1.06400514659507,0.560677600142307,0,0,0.311211035399766,0.134710672069688,0.653847612453835,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,2.37600571456411,0,0,0,0,0,0,0.438977620880838,0,0.901428353439581,0,0.179389635688862,0.213557388818567,0.211931901159562,1.20036438433761,0,0,0.18611685633159,0.337552664482532,0.194874010322397,0.504867548488229,0.0920498986422993,0,0.710019185033229,0.10075209822764,0,2.51239109112286,3.00020732649918,0.573609190778008,0.243947412259191,0,0.116193942869518,0.621966330092223,0,0,0,0.643240938192885,0,0,0,0.236613600079688,0,0.241011029883482,0.330881918197182,0,0.237270619111097,0.134831308160164,0,0,0,0,0,0,3.80265104465493,4.91413608338813,2.95394953340702,0,1.47586126251736,1.02940686179115,0.658501712451753,1.1240175325762,0.804231779293047,3.05541869023148,0,0,0,0.463721619900307,0.234817388471643,0,0,0,2.37061319387782,3.43394464837949,11.8184162921951,4.44608103764552,9.80965671105606,0.93733833986777,1.17587489739202,0.992425680696705,0,0.290633938513962,0,0,0.088048434013226,2.07328115540772,1.44119953416961,2.77733353538036,0,0,0,0,0.102827492703324,0,0,0,0,0,0.646358578788889,0,0,0,0,0,0,0.532844358032199,0,0.542621605391443,0.823240336780769,0,0.355391948742546,0,4.52159065589379,2.61460037580088,3.29910870900788,3.64871341923571,5.52482800575339,10.5416969741516,0,0,0,0,0.205476322550383,0.179060963239896,0,0.197030760201927,0,0.128343036279748,0.508189248444927,0,0,0.167516265334349,0,7.49007023947182,5.9832291840805,7.87389475528467,0,0.500170521059677,0,0,0,0,0.117141414992713,0,0,0,0,0,0.173767228936166,0,0,0.413536052245775,1.50999940573032,1.06727557803444,0,0,0.30239029332968,0,0.153461973288062,0,0,0,0.160853921143607,0,0.308419387605311,0.177561725313127,0.164254312027618,0,0,0.241718899183244,1.20303882181971,4.32780647998713,0,0,0,1.35359883872224,1.84836809050595,3.92174884588428,2.92278449306521,1.47772280450026,0,0,0.215915916102139,0,0,1.00337954770971,2.54876273045038,0,0.895499018888713,0,0,2.56450125116389,2.62411716559765,0.976135183992909,8.03719890852234,0.183138929636687,0.41254749960294,1.14853107599234,0.650060246036521,0,0,0.154048617114644,0.15350367472613,0,0.322260734604821,0.435050081742686,0.0852266274161009,0,1.65284915360978,0.384380134730212,3.82838137483752,2.32662895967765,0,0,0,0,0,0,0.37064843820784,0,0,0,0.571890581771475,0,0,0,0,0,0.54907405947211,0.117812402345686,0,0,0.421258456238981,0,0.731140468893853,0,0,0.282810863907425,0,0,0.66343897524122,0,0,0,0,0,0,0.143411352204052,0.0982490410131212,0.35667105148125,0,0,0.329294892959902,0.379473173765715,0,2.21310859268678,1.34060455107157,0,7.71979166369589,1.29151611801369,5.05414427002877,1.7737206141467,1.37834040124176,3.55213326462519,2.29391162142713,2.84823593587081,1.42939065274673,2.05681136543097,1.94541993357815,2.70015718619057,3.17250070517708,0.854592569019785,0,2.45040215981032,0.185803175125719,0,0,0,0,0.5745161103971,0,0,0,0,0,0,0,0.802940375518498,0.80719882876419,2.12923118845163,0.687010689511529,0.614481528616916,0.223676107892416,0.333698283423817,0,0,0,0,0,0,7.11134053551235,1.31857361344705,0,0,0,0.23874448473769,0,0.921482106297696,1.9882952955326,0.281338832821026,0.667852230137435,0.824019371133798,0,3.387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| ||
|short_description=p3@RBM47 | |||
}} | }} |
Latest revision as of 18:50, 17 September 2015
Short description: | p3@RBM47 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RBM47_5end |
Coexpression cluster: | C4411_pancreatic_salivary_CD14_parotid_submaxillary_choriocarcinoma_seminal |
Association with transcript: | 24bp_to_ENST00000295971, ENST00000510871_5end |
EntrezGene: | RBM47 |
HGNC: | 30358 |
UniProt: | A0AV96D6R9D6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 1.62e-33 | 61 |
myeloid leukocyte | 2.09e-33 | 72 |
defensive cell | 6.24e-33 | 48 |
phagocyte | 6.24e-33 | 48 |
granulocyte monocyte progenitor cell | 4.46e-32 | 67 |
monopoietic cell | 5.92e-32 | 59 |
monocyte | 5.92e-32 | 59 |
monoblast | 5.92e-32 | 59 |
promonocyte | 5.92e-32 | 59 |
myeloid lineage restricted progenitor cell | 9.59e-30 | 66 |
classical monocyte | 4.81e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.81e-28 | 42 |
myeloid cell | 1.46e-19 | 108 |
common myeloid progenitor | 1.46e-19 | 108 |
leukocyte | 7.83e-15 | 136 |
hematopoietic lineage restricted progenitor cell | 2.98e-12 | 120 |
nongranular leukocyte | 2.15e-11 | 115 |
hematopoietic oligopotent progenitor cell | 7.63e-09 | 161 |
hematopoietic multipotent progenitor cell | 7.63e-09 | 161 |
hematopoietic stem cell | 2.48e-08 | 168 |
hematopoietic cell | 3.19e-07 | 177 |
endodermal cell | 9.41e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 7.41e-27 | 98 |
blood island | 7.41e-27 | 98 |
bone marrow | 1.44e-25 | 76 |
hemolymphoid system | 4.09e-24 | 108 |
bone element | 5.29e-23 | 82 |
immune system | 1.49e-22 | 93 |
skeletal element | 1.05e-19 | 90 |
skeletal system | 1.22e-15 | 100 |
endoderm-derived structure | 8.17e-10 | 160 |
endoderm | 8.17e-10 | 160 |
presumptive endoderm | 8.17e-10 | 160 |
digestive system | 6.39e-09 | 145 |
digestive tract | 6.39e-09 | 145 |
primitive gut | 6.39e-09 | 145 |
subdivision of digestive tract | 1.74e-08 | 118 |