FFCP PHASE1:Hg19::chr6:169628238..169628278,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:169628238..169628278,+ to FFCP PHASE1:Hg19::chr6:169628238..169628278,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr6:169628238..169628278,+ | |||
|coexpression_cluster_id=C1974 | |||
|description=CAGE_peak_at_chr6:169628238..169628278,+ | |||
|id=chr6:169628238..169628278,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.01e-23!180;CL:0000057!2.35e-20!75;CL:0002334!1.92e-09!12;CL:0000680!7.90e-07!57;CL:0000056!7.90e-07!57;CL:0000355!7.90e-07!57;CL:0000723!8.70e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0002334;8.35e-16;12!CL:0000135;4.21e-09;3!CL:0000388;4.21e-09;3!CL:0002582;5.71e-08;3!CL:0000197;8.24e-08;6!CL:0000098;8.24e-08;6!CL:0002167;8.24e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,8.89e-16,12;CL:0000057,1.24e-13,76;CL:0000723,7.94e-10,433;CL:0000034,2.32e-09,441;CL:0000135,4.70e-09,3;CL:0000388,4.70e-09,3;CL:0000048,5.81e-09,427;CL:0002582,6.87e-08,3;CL:0000197,8.78e-08,6;CL:0000098,8.78e-08,6;CL:0002167,8.78e-08,6;CL:0002320,4.08e-07,361;CL:0000134,5.22e-07,354 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!5.78e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.66e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.07e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002199!1.44e-08!45;UBERON:0002416!1.44e-08!45;UBERON:0003102!2.83e-08!95;UBERON:0000475!1.37e-07!365;UBERON:0002385!6.69e-07!63;UBERON:0001015!6.69e-07!63;UBERON:0000383!6.69e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;5.29e-10;9!UBERON:0000042;5.29e-10;9!UBERON:0007846;4.21e-09;3!UBERON:0000043;4.21e-09;3!UBERON:0007845;4.21e-09;3!UBERON:0003688;2.37e-07;6!UBERON:0002358;2.37e-07;6!UBERON:0003684;2.37e-07;6!UBERON:0001178;2.37e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,4.70e-09,3;UBERON:0000043,4.70e-09,3;UBERON:0007845,4.70e-09,3;UBERON:0002384,1.21e-07,371;UBERON:0003688,2.42e-07,6;UBERON:0002358,2.42e-07,6;UBERON:0003684,2.42e-07,6;UBERON:0001178,2.42e-07,6;UBERON:0004457,2.84e-07,12;UBERON:0000042,2.84e-07,12 | |||
|phase1_expression=1.45342703416445,1.49870366723688,0.563817616383885,3.00219895059391,4.46961094427288,4.36169262050184,2.53299878168311,0.631719873426831,0.783556884599516,0,0,0,0,0.247532705920093,0,1.34465029290355,0,3.65155045193687,0.975865597581014,0,0,0,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.34732710268003,1.0843174571537,0,0.724232594804119,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97577561356255,1.01304409331664,1.58891016975863,5.16305917347865,0.709336764396714,0,0,1.72667283892012,0,0.404132016209064,0.653847612453835,0.151357427644931,1.72852777344,0.70296429550139,0.624320153660641,0,1.04614076386261,0,0,0,0.204154171254893,0,0.103325781175765,2.37600571456411,3.70900393917835,0,2.87447256726495,0.168336113954066,0,0,0,0.919463387397059,2.40380894250555,0.567160915800105,0.89694817844431,0.85422955527427,0.847727604638247,0.900273288253207,0,0.515281080091258,0.744467425326359,0.337552664482532,0.194874010322397,0.252433774244115,0.644349290496095,0.323292113637624,2.4850671476163,0.10075209822764,0.339121184620975,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,1.92972281457866,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0.686271241194102,3.84125998930189,0,2.01057944823262,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0.901029173531752,0,0,0,0.07333828582095,1.42198887333556,0,1.690605505112,1.59562869950922,3.12022310734098,0,0,0.532844358032199,2.57360388584666,0,0,0.65147236858747,0.710783897485092,0,0,0,0.099972991182057,0,0,0,0.479249710983165,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0.858840442033979,1.50051156317903,0.271265023699736,19.7572318454267,15.3448930365559,17.0318608236649,4.33423235473039,0.300946099727719,0,0,4.64957918974806,0.368738337083406,1.65078867489357,0.195801157462741,0,0,0,0,0,0,0,0.496215615637554,2.76231551918512,4.77122160536225,2.56278298511402,0.511707249066704,12.2248980069142,0,2.00472601943452,4.43904313282818,1.56041596426237,2.07701771673448,3.37010097533882,0,0.40101294060657,0.184161977871793,0.459257792658427,0.364182336013434,0.524497659837696,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0.183138929636687,0.165018999841176,0,0.650060246036521,0,1.25671933779759,0.308097234229289,0.460511024178389,0.413509717453592,0.429680979473094,0.145016693914229,0.255679882248303,3.82837753280971,0.165284915360978,0.192190067365106,0,0.10115778085555,0.464845549297286,4.40737285562896,0,0,0,0,0,0,0,0.316379424718726,1.71567174531442,0,0,0,0.78494864019923,0.359744915166629,0.54907405947211,0.589062011728432,0,0,0.421258456238981,0,10.4796800541452,0,0.545999645631943,0.848432591722276,0,0,2.65375590096488,0,0.578775534266688,0,0,0,0.281695602532241,0.430234056612155,1.76848273823618,0,1.06428319221179,1.47775344708365,11.5253212535966,0,0,0,0,0,0.282431402330337,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13654458722565,0,0,0,0,0,0.222617410045812,0,0,1.79323189425963,0,0,0,0,0.311039587661807,0,0,0,0.690503839458535,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0.569710279235006,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0.802577647298789,0.234264445725339,0,0,0,0,1.20990716048664,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0.225980740780532,0.411125773940253,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0.407712618220842,0.523014231561666,0,0.577901179803038,0,0.136905378891993,0,0,0,0.279282401272254,0,0,0,0,0,0.134366944973453,4.68389848605125,0,0,0,0,0,0,0,0.136203406111576,0.160753148465019,0,0,0,0,0,0,0,0.157363764404994,0,0,0,0,0.662091970365432,0,0.542999601753713,1.72844298240254,0,0,0,2.3854323049959,0,0,0,0.258565912723101,0.13223260174269,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.110929051536852,0.248385611765534,0,0,0.909894705249887,0,0,0,0,1.79105763464249,2.33713309847224,1.66441758450784,0.378806010550178,0.754703705257725,0.889811221596536,0.915360273587694,1.96600200892211,2.33155800874171,0.73927574994817,1.59296767163702,0,0.465788870628778,2.48823724704513,3.19010057469594,1.04349012362347,2.70463696194993,3.04644169735036,0.406870733204662,1.27294061441792,0.859284456339908,0.464033759878494,0.796191777397232,0,0.686791410365586,0.673498977531838,0,0,0.214441591374926,0.521988583930423,0,2.54674721756217,0,0.895444205407437,0,2.85069264452319,1.06013487567529,2.89371057406372,0.168942440653073,0,0,1.21543982470953,0.138258436151731,0,0,0,0.327609848846413,0,0,0,0,0,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,1.90802610392051,0,0,3.87943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| 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| ||
|short_description=p@chr6:169628238..169628278,+ | |||
}} | }} |
Latest revision as of 22:16, 30 July 2015
Short description: | p@chr6:169628238..169628278, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:169628238..169628278, + |
Coexpression cluster: | C1974_Olfactory_Preadipocyte_Fibroblast_Synoviocyte_Smooth_Adipocyte_tenocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 8.89e-16 | 12 |
fibroblast | 1.24e-13 | 76 |
somatic stem cell | 7.94e-10 | 433 |
stem cell | 2.32e-09 | 441 |
fibrocyte | 4.70e-09 | 3 |
tendon cell | 4.70e-09 | 3 |
multi fate stem cell | 5.81e-09 | 427 |
visceral preadipocyte | 6.87e-08 | 3 |
receptor cell | 8.78e-08 | 6 |
sensory epithelial cell | 8.78e-08 | 6 |
olfactory epithelial cell | 8.78e-08 | 6 |
connective tissue cell | 4.08e-07 | 361 |
mesenchymal cell | 5.22e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 4.70e-09 | 3 |
tendon | 4.70e-09 | 3 |
regular connective tissue | 4.70e-09 | 3 |
connective tissue | 1.21e-07 | 371 |
omentum | 2.42e-07 | 6 |
peritoneum | 2.42e-07 | 6 |
abdominal cavity | 2.42e-07 | 6 |
visceral peritoneum | 2.42e-07 | 6 |
cavity lining | 2.84e-07 | 12 |
serous membrane | 2.84e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.07e-07 | 14 |