FF:11548-120B9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005913 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005913 | ||
|accession_numbers=CAGE;DRX008345;DRR009217;DRZ000642;DRZ002027;DRZ011992;DRZ013377 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037094;DRR041460;DRZ007102 | |||
|ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569,CL:0002568 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000094,FF:0000001,FF:0000095 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11548-120B9 | |id=FF:11548-120B9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000095 | ||
|is_obsolete= | |||
|library_id=CNhs11057 | |||
|library_id_phase_based=2:CNhs11057 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11548 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.CAGATC.11548 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11548 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.CAGATC.11548 | |||
|name=Mesenchymal Stem Cells - Wharton's Jelly, donor1 | |name=Mesenchymal Stem Cells - Wharton's Jelly, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11057,LSID722,release008,COMPLETED | |profile_hcage=CNhs11057,LSID722,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10007,,, | |profile_srnaseq=SRhi10007,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0179864068101138,0,0.00130959344856518,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0109913870721553,0,0,0.0263992253719047,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0293208169516983,0,0,0,0,0,0,0,0,0.0521183079406668,0,0,0,0.0527984507438095,0,0,0.0527984507438095,-0.0969923612426051,0,0,0.119180803802374,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0527984507438095,0,0,0,0,0.0263992253719047,0,0,0,0,0,-0.0501435105206645,0.0499341036815964,0,0,-0.0317277083937073,0.00291312008424077,0,0.468210777451425,0.0263992253719047,0.0998682073631928,-0.045236900493897,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0464394902408646,0,0,0,0.000466075074992744,0.0941849383494658,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0.0527984507438095,0,-0.045236900493897,0,0.0998682073631928,0.0998682073631928,0,0.0527984507438095,0,0.0998682073631928,0,0.468210777451425,0,0,0.113171605750597,0,-0.293075771086506,-0.0436469351602791,0,0,-0.116325704736779,0,0,0,0.0499341036815964,0,0,0,0.0527984507438095,0,0.393918690029826,0,-0.0504125515893149,0,0.0998682073631928,0.0527984507438095,0,0.222774797097719,0.0029158096491399,0,0.118132371256403,0.0315239462858246,0,0,0,0,0.304040811636168,0,0.0214521394825317,0.059611454952855,0.36316927670902,0.0769357733495345,-0.055712496781182,0,0,0,0.0636076448072354,-0.0333476179290144,0,0,0.0703062200752455,0.0327609042194504,0,0,0.611079133479631,0,0.0409486950054991,0.0757425621762108,0,-0.0374459656746384,0,0,0,0,0,0,0,0,0,0,0,0.0136723448166995,0.10123244888125,0,0,0,0,-0.094069516400453,0,0,-0.320487705212757,0.090718504551301,-0.0365637283084682,-0.0989018063265152,0,-0.302389727009913,-0.00102385938420191,-0.0279305103804355,0.161496339864187,-0.0475336420079457,0.089890920578005,0,-0.193675388271764,-0.0145143153378258,-0.0105276933359832,-0.0501435105206645,0,0.352464722112851,-0.161471525911699,0,0,0.0339627685530264,0.122593277443085,0,-0.0321934164888307,-0.0414386848693084,0.0169216185356894,0.150976853741639,-0.256146574279037,0.0286194078354839,-0.165611275078279,0.0316332831814656,-0.00876042328912957,-0.0373901227091121,0.739516092722425,0,0.0998682073631928,-0.0240632085085258,0.00800122693498099,0.0638616398085102,-0.147615395727255,0,0.070564308862543,0.0315239462858246,0.0263992253719047,0.179314786691598,-0.18903316691471,0,0.142331623276272,0.0978139423865129,0,0,0,0,0,-0.182336782233327,-0.155319999375927,-0.0905239382792725,0,-0.122039023939241,0.0235630172536538,-0.0939086702116875,0,-0.179339544759228,0.0511868310426464,-0.147729834443309,0.0915383390580031,0,-0.0364047208002604,0.0456318991365534,0.0475463187228247,0.00582624016848154,-0.0584468268118252,-0.00899383190975611,-0.123599786938499,-0.0317277083937073,-0.162415459831632,-0.0592285019767862,1.45752329014028,0.0485704806113363,0.218011742411005,-0.344352184069808,-0.0448656674985183,-0.0618194518258517,0.0998682073631928,0.210703503419577,0,-0.125223515010759,0.0263992253719047,-0.215361002027972,0.0141080192002836,-0.386490923836877,-0.11815944276068,0,0.0431473865884582,0.858331848275382,0,-0.0618873138245695,0,0,0.0661573476808317,-0.175657409530192,-0.0499793923937018,0.0192068625101374,0,0.212043556641609,0,0,0.200086146188652,-0.182677587020579,0,0.0812803380981477,0.122807720277463,-0.0194351763834683,-0.0161028660717412,0,0,0.393869310608162,0,0,0.309957829035876,0.181010447665502,-0.0811891577559207,0.130845802167483,0,0.0424526889383701,0.00946292821249982,0,-0.0776595586019828,0,0.148699542947076,0,0,0.215256169360057,0.0363578370560874,0,0.0263992253719047,0.0527984507438095,0,0.16428019057096,0,0,0,0,0,0,0.0173211945995504,-0.212501706940176,0,0.0592903997896443,0,0,0,0.0527984507438095,0,0,0,0.486904536501347,0.797637177505902,0.052857612736591,0.126335130365022,0.071165811638136,0,0,0,0.212497643006744,-0.103368354731531,0.0527984507438095,0.0846617245178393,0.0998682073631928,0,0,0,-0.0333425390454019,0,0.0998682073631928,0.0499341036815964,0,0.0421377503095288,0.0052282322518955,0,0,0,-0.27695440160179,0,0,0.0527984507438095,0,-0.171966117271655,0,0.0527984507438095,0.154844533705054,0,-0.130961298530723,-0.0815818795468414,0,-0.0103021200163555,0.320447483056537,0.380219352473688,0,0,-0.0803366841243852,0,0.0998682073631928,0.127620442281459,0,0,0.00257393127079627,0,0,0,0,0,0.0527984507438095,0.0655581277280967,0.0763333290535012,0,0,0,0,0,0,0,0,0,0,0.130085579110985,0.088786391006992,0.0527984507438095,0,0,0,0,0,0.0527984507438095,0.00229320229300162,-0.0614155159482078,0,0,0.0263992253719047,0,0,0,0,0,-0.19155329953539,0,0,0,0,0,-0.0969923612426051,0,0.0527984507438095,0,0,-0.564807121153884,0,0,0.0577838153582024,0,0,0,0,0,0,0.015273690316456,0,0,0,0,0,0,0.0576913616300546,0.00130959344856518,0,0,0,0,0,0,0,-0.132501674929818,0,0,0,0,-0.0140161663457844,0,0,0,0.23034956276256,0,-0.0179864068101138,0,0,0,0,0,0.00390879998960596,0.0263992253719047,0,0,0,0,0,0,0,0,0,0,0.108262215507736,0,0,0,0.250304929420734,0.165007109487131,0.0527984507438095,-0.0335266154300968,0,0,0.143541167847032,0,0,0,0,0,0,-0.00494119865662233,0,0,0,0,0,0,0,0,0.0263992253719047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0097978841532213,0,0,0,0,0.699614296144284,0,0,-0.0979578962680575,0.0527984507438095,0,-0.02086699816239,0,0,0,0,0,0,-0.107383595011031,0.458324554428675,-0.00235167398439373,0,0,0,0.0431794645275859,0.0527984507438095,0,0,0.0527984507438095,0.14974704359657,0,0,0,0,0,0,0,0,0,0,0,0.0975650370100407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0109913870721553,0,0,0,0,0,0,0,0,0,0,0,0,0.071165811638136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0527984507438095,0,0,0,0.0998682073631928,0,0,0,0.0159227404061799,0.142331623276272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.50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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 82: | ||
|rna_tube_id=120B9 | |rna_tube_id=120B9 | ||
|rna_weight_ug=6.9 | |rna_weight_ug=6.9 | ||
|rnaseq_library_id=SRhi10007.CAGATC | |||
|sample_age=? | |sample_age=? | ||
|sample_category=primary cells | |||
|sample_cell_catalog=HMSC.WJ-500 | |sample_cell_catalog=HMSC.WJ-500 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.9593461002212e-210!GO:0005737;cytoplasm;2.88749394222872e-182!GO:0043231;intracellular membrane-bound organelle;8.10466844074739e-155!GO:0043227;membrane-bound organelle;1.36061362096104e-154!GO:0043226;organelle;2.91471894463269e-154!GO:0043229;intracellular organelle;6.39324821006528e-154!GO:0044444;cytoplasmic part;2.72804383410536e-136!GO:0044422;organelle part;7.62624130465169e-113!GO:0044446;intracellular organelle part;2.19145772477578e-111!GO:0044238;primary metabolic process;2.27575452527769e-77!GO:0044237;cellular metabolic process;1.56638148118249e-75!GO:0032991;macromolecular complex;3.10503135692384e-75!GO:0005515;protein binding;3.84677611777061e-75!GO:0030529;ribonucleoprotein complex;2.77963734255658e-74!GO:0043170;macromolecule metabolic process;4.39721722154098e-69!GO:0043233;organelle lumen;1.72005864503909e-63!GO:0031974;membrane-enclosed lumen;1.72005864503909e-63!GO:0003723;RNA binding;2.35662453250986e-57!GO:0044428;nuclear part;2.42855065549667e-56!GO:0005739;mitochondrion;2.82325093051399e-56!GO:0031090;organelle membrane;1.94944776250984e-54!GO:0019538;protein metabolic process;1.02611676077356e-50!GO:0005634;nucleus;5.88956716506804e-46!GO:0044260;cellular macromolecule metabolic process;9.89541949523812e-46!GO:0005840;ribosome;1.64762325011502e-45!GO:0033036;macromolecule localization;3.80132366364328e-45!GO:0015031;protein transport;3.80132366364328e-45!GO:0044267;cellular protein metabolic process;5.05083145183749e-45!GO:0006412;translation;7.90332372728089e-44!GO:0009058;biosynthetic process;9.14153528737809e-43!GO:0045184;establishment of protein localization;1.78545637547752e-42!GO:0008104;protein localization;3.19954782730336e-42!GO:0006396;RNA processing;1.25241998554092e-40!GO:0003735;structural constituent of ribosome;5.24164425220179e-40!GO:0016043;cellular component organization and biogenesis;1.26398197279409e-38!GO:0044429;mitochondrial part;3.15036040433378e-38!GO:0009059;macromolecule biosynthetic process;5.46549131468032e-38!GO:0044249;cellular biosynthetic process;2.30748593088153e-36!GO:0031981;nuclear lumen;1.69382496611942e-35!GO:0043234;protein complex;1.71269916689062e-35!GO:0031967;organelle envelope;4.49619993610136e-35!GO:0033279;ribosomal subunit;4.93409503300324e-35!GO:0005829;cytosol;6.04727138106985e-35!GO:0031975;envelope;7.57222003313887e-35!GO:0043283;biopolymer metabolic process;9.12010710583115e-35!GO:0010467;gene expression;1.34699005552262e-33!GO:0046907;intracellular transport;5.54956627439784e-33!GO:0016071;mRNA metabolic process;5.91229322340538e-32!GO:0008380;RNA splicing;1.47321267917699e-30!GO:0006886;intracellular protein transport;9.37914134907905e-30!GO:0006397;mRNA processing;3.96000129584078e-28!GO:0005783;endoplasmic reticulum;2.92671747571326e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.16755694260843e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.77683578894787e-25!GO:0005740;mitochondrial envelope;5.60458335926065e-25!GO:0012505;endomembrane system;6.92881567384435e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.43960224154901e-25!GO:0031966;mitochondrial membrane;1.18539711848887e-23!GO:0019866;organelle inner membrane;1.267309816497e-23!GO:0005743;mitochondrial inner membrane;2.00975907035218e-22!GO:0065003;macromolecular complex assembly;4.54525706959839e-22!GO:0005654;nucleoplasm;4.60794792484027e-22!GO:0006119;oxidative phosphorylation;1.38078771862514e-21!GO:0005681;spliceosome;1.94874110482751e-21!GO:0006457;protein folding;5.985563527275e-21!GO:0051641;cellular localization;1.01492099752436e-20!GO:0044445;cytosolic part;1.06280115810397e-20!GO:0051649;establishment of cellular localization;1.42108144358198e-20!GO:0005794;Golgi apparatus;2.06789103983764e-20!GO:0048770;pigment granule;5.07878859561755e-20!GO:0042470;melanosome;5.07878859561755e-20!GO:0044432;endoplasmic reticulum part;8.7644018890617e-20!GO:0022607;cellular component assembly;2.86495065803921e-19!GO:0006996;organelle organization and biogenesis;4.65710344342969e-19!GO:0044455;mitochondrial membrane part;9.13227223295204e-19!GO:0044451;nucleoplasm part;1.80269504187546e-18!GO:0015934;large ribosomal subunit;2.09933465710798e-18!GO:0015935;small ribosomal subunit;1.75596041208202e-17!GO:0008134;transcription factor binding;1.78652784134891e-17!GO:0016874;ligase activity;2.03869306542113e-17!GO:0000166;nucleotide binding;3.84053155011458e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.97856296639525e-16!GO:0016462;pyrophosphatase activity;3.00989858302519e-16!GO:0043228;non-membrane-bound organelle;3.74866615776313e-16!GO:0043232;intracellular non-membrane-bound organelle;3.74866615776313e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;4.38593677378085e-16!GO:0031980;mitochondrial lumen;6.67159438205684e-16!GO:0005759;mitochondrial matrix;6.67159438205684e-16!GO:0048193;Golgi vesicle transport;8.0676304668744e-16!GO:0017111;nucleoside-triphosphatase activity;9.1651121289641e-16!GO:0022618;protein-RNA complex assembly;1.23644879765329e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.46304393403375e-15!GO:0005746;mitochondrial respiratory chain;4.28447511802358e-15!GO:0006512;ubiquitin cycle;5.32850247576348e-15!GO:0016192;vesicle-mediated transport;1.10584824389764e-14!GO:0006605;protein targeting;1.10584824389764e-14!GO:0051186;cofactor metabolic process;1.25079540689025e-14!GO:0005730;nucleolus;1.9617282262416e-14!GO:0000502;proteasome complex (sensu Eukaryota);3.87587241458002e-14!GO:0043412;biopolymer modification;5.24235034136195e-14!GO:0044265;cellular macromolecule catabolic process;6.06808727961856e-14!GO:0050136;NADH dehydrogenase (quinone) activity;6.13375403611423e-14!GO:0003954;NADH dehydrogenase activity;6.13375403611423e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.13375403611423e-14!GO:0051082;unfolded protein binding;7.65466598766828e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;9.6252747166295e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.01187264397723e-13!GO:0008135;translation factor activity, nucleic acid binding;1.10432690183498e-13!GO:0043285;biopolymer catabolic process;1.25572120613954e-13!GO:0016070;RNA metabolic process;1.65219239518531e-13!GO:0044257;cellular protein catabolic process;1.71373829552816e-13!GO:0019941;modification-dependent protein catabolic process;1.73934070832405e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.73934070832405e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.51228818523308e-13!GO:0003676;nucleic acid binding;2.56398967124114e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.56398967124114e-13!GO:0005789;endoplasmic reticulum membrane;4.22343108820249e-13!GO:0005761;mitochondrial ribosome;4.33921394490697e-13!GO:0000313;organellar ribosome;4.33921394490697e-13!GO:0006464;protein modification process;8.27110430254194e-13!GO:0009057;macromolecule catabolic process;1.02276150734859e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.02477052863434e-12!GO:0030163;protein catabolic process;1.17421032534249e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.30288348121214e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.47028854511921e-12!GO:0042773;ATP synthesis coupled electron transport;3.47028854511921e-12!GO:0030964;NADH dehydrogenase complex (quinone);4.01688020550471e-12!GO:0045271;respiratory chain complex I;4.01688020550471e-12!GO:0005747;mitochondrial respiratory chain complex I;4.01688020550471e-12!GO:0044248;cellular catabolic process;4.24004261790967e-12!GO:0003712;transcription cofactor activity;5.17889083598677e-12!GO:0005793;ER-Golgi intermediate compartment;5.62850998581507e-12!GO:0032553;ribonucleotide binding;7.18069843623312e-12!GO:0032555;purine ribonucleotide binding;7.18069843623312e-12!GO:0006732;coenzyme metabolic process;7.7706413571959e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.07396433987711e-11!GO:0017076;purine nucleotide binding;1.4137140830454e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;5.93295078100158e-11!GO:0000375;RNA splicing, via transesterification reactions;5.93295078100158e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.93295078100158e-11!GO:0048523;negative regulation of cellular process;5.9667384215127e-11!GO:0031965;nuclear membrane;8.46527707234756e-11!GO:0012501;programmed cell death;9.97823971067532e-11!GO:0003743;translation initiation factor activity;1.12226609301984e-10!GO:0005635;nuclear envelope;1.1551044030847e-10!GO:0009055;electron carrier activity;1.16810028764787e-10!GO:0009259;ribonucleotide metabolic process;1.366783149247e-10!GO:0006915;apoptosis;2.80258287331201e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.90898768822074e-10!GO:0006259;DNA metabolic process;2.9955833183633e-10!GO:0006163;purine nucleotide metabolic process;3.76511051032051e-10!GO:0009150;purine ribonucleotide metabolic process;4.30646027952396e-10!GO:0042254;ribosome biogenesis and assembly;4.74320757084403e-10!GO:0043687;post-translational protein modification;8.33932289958011e-10!GO:0008565;protein transporter activity;9.18007612331623e-10!GO:0006413;translational initiation;1.0349072984461e-09!GO:0044431;Golgi apparatus part;1.10640524964905e-09!GO:0008219;cell death;1.31320781748039e-09!GO:0016265;death;1.31320781748039e-09!GO:0005788;endoplasmic reticulum lumen;1.51698190048706e-09!GO:0008639;small protein conjugating enzyme activity;1.56175704058501e-09!GO:0006164;purine nucleotide biosynthetic process;2.17705728778049e-09!GO:0016604;nuclear body;2.25509705808957e-09!GO:0019787;small conjugating protein ligase activity;2.29338607842089e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.37420243112195e-09!GO:0004842;ubiquitin-protein ligase activity;2.69489413629775e-09!GO:0006888;ER to Golgi vesicle-mediated transport;3.27459984371798e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.27459984371798e-09!GO:0009260;ribonucleotide biosynthetic process;3.38090662871801e-09!GO:0006446;regulation of translational initiation;3.5694106387355e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.64614955227728e-09!GO:0048519;negative regulation of biological process;4.11114164778132e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.12506725991971e-09!GO:0044453;nuclear membrane part;5.81522525765685e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.84222452005451e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.84222452005451e-09!GO:0009141;nucleoside triphosphate metabolic process;6.53719711695143e-09!GO:0006913;nucleocytoplasmic transport;6.82876349692533e-09!GO:0005524;ATP binding;9.73130325881265e-09!GO:0015986;ATP synthesis coupled proton transport;1.02185645263707e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.02185645263707e-08!GO:0030120;vesicle coat;1.12642218926598e-08!GO:0030662;coated vesicle membrane;1.12642218926598e-08!GO:0051169;nuclear transport;1.40499452994796e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.59803136739791e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.59803136739791e-08!GO:0005768;endosome;1.61843389940476e-08!GO:0016881;acid-amino acid ligase activity;1.94246117731744e-08!GO:0032559;adenyl ribonucleotide binding;1.95375844935971e-08!GO:0048475;coated membrane;2.57045129278342e-08!GO:0030117;membrane coat;2.57045129278342e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.58798484604937e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.58798484604937e-08!GO:0009060;aerobic respiration;2.58798484604937e-08!GO:0006399;tRNA metabolic process;3.1934402081601e-08!GO:0016607;nuclear speck;3.33372189537171e-08!GO:0050794;regulation of cellular process;3.54802639692345e-08!GO:0019829;cation-transporting ATPase activity;3.63079621736312e-08!GO:0030554;adenyl nucleotide binding;4.3507245384166e-08!GO:0046034;ATP metabolic process;4.99682151405804e-08!GO:0006366;transcription from RNA polymerase II promoter;5.45324735358765e-08!GO:0043069;negative regulation of programmed cell death;5.7554070257646e-08!GO:0045333;cellular respiration;6.96949404237353e-08!GO:0051188;cofactor biosynthetic process;8.25169860667779e-08!GO:0006461;protein complex assembly;8.51494756813901e-08!GO:0031988;membrane-bound vesicle;8.85845944726967e-08!GO:0017038;protein import;9.4548770649281e-08!GO:0016023;cytoplasmic membrane-bound vesicle;9.99453384661566e-08!GO:0003924;GTPase activity;1.49791475811559e-07!GO:0043067;regulation of programmed cell death;1.60066749261672e-07!GO:0051246;regulation of protein metabolic process;1.61322280084267e-07!GO:0003714;transcription corepressor activity;1.65010904848451e-07!GO:0043066;negative regulation of apoptosis;1.65173894083522e-07!GO:0016887;ATPase activity;1.69965276681817e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.87395096785591e-07!GO:0006754;ATP biosynthetic process;1.91215395857921e-07!GO:0006753;nucleoside phosphate metabolic process;1.91215395857921e-07!GO:0042623;ATPase activity, coupled;1.98828052979784e-07!GO:0007005;mitochondrion organization and biogenesis;2.16632832806945e-07!GO:0065002;intracellular protein transport across a membrane;2.64113710120202e-07!GO:0042981;regulation of apoptosis;2.72407468202782e-07!GO:0000139;Golgi membrane;2.76433675422144e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.58058864600288e-07!GO:0006974;response to DNA damage stimulus;3.66612942708442e-07!GO:0005773;vacuole;4.04157816053473e-07!GO:0009056;catabolic process;4.04157816053473e-07!GO:0006916;anti-apoptosis;4.43092024316447e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.69477597883531e-07!GO:0005643;nuclear pore;5.74036327082626e-07!GO:0005798;Golgi-associated vesicle;5.74036327082626e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.86878690483564e-07!GO:0004812;aminoacyl-tRNA ligase activity;5.86878690483564e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.86878690483564e-07!GO:0007049;cell cycle;6.94412711693402e-07!GO:0006099;tricarboxylic acid cycle;7.19968247434718e-07!GO:0046356;acetyl-CoA catabolic process;7.19968247434718e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.66132093493896e-07!GO:0043038;amino acid activation;8.20026333322512e-07!GO:0006418;tRNA aminoacylation for protein translation;8.20026333322512e-07!GO:0043039;tRNA aminoacylation;8.20026333322512e-07!GO:0004386;helicase activity;1.0634117487323e-06!GO:0051187;cofactor catabolic process;1.22487698192141e-06!GO:0008026;ATP-dependent helicase activity;1.25360818622326e-06!GO:0031982;vesicle;1.30879375059035e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.51226309460371e-06!GO:0009109;coenzyme catabolic process;1.54163841024906e-06!GO:0016564;transcription repressor activity;1.60304554923527e-06!GO:0031410;cytoplasmic vesicle;1.63745403022299e-06!GO:0044440;endosomal part;1.65662471193365e-06!GO:0010008;endosome membrane;1.65662471193365e-06!GO:0008654;phospholipid biosynthetic process;1.93326228125986e-06!GO:0005667;transcription factor complex;1.93815513809458e-06!GO:0016740;transferase activity;1.95545323739238e-06!GO:0005770;late endosome;2.12439279867896e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.13820912909167e-06!GO:0006084;acetyl-CoA metabolic process;2.59812723543901e-06!GO:0031252;leading edge;2.67086977225652e-06!GO:0016491;oxidoreductase activity;2.71282336320969e-06!GO:0009108;coenzyme biosynthetic process;2.81553809331e-06!GO:0000323;lytic vacuole;3.15251852403344e-06!GO:0005764;lysosome;3.15251852403344e-06!GO:0006364;rRNA processing;3.2857487093742e-06!GO:0030532;small nuclear ribonucleoprotein complex;3.49149885563374e-06!GO:0009117;nucleotide metabolic process;3.98212907354604e-06!GO:0016563;transcription activator activity;4.3371859506987e-06!GO:0016853;isomerase activity;4.34689482572967e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.41897859054561e-06!GO:0006752;group transfer coenzyme metabolic process;4.4237106841054e-06!GO:0016072;rRNA metabolic process;4.98298345994172e-06!GO:0046930;pore complex;5.83556506515965e-06!GO:0003713;transcription coactivator activity;6.22018320977432e-06!GO:0005525;GTP binding;6.22623101557279e-06!GO:0006403;RNA localization;7.3791768692532e-06!GO:0050789;regulation of biological process;7.86848163811618e-06!GO:0006613;cotranslational protein targeting to membrane;8.11283987788529e-06!GO:0050657;nucleic acid transport;9.42464004765825e-06!GO:0051236;establishment of RNA localization;9.42464004765825e-06!GO:0050658;RNA transport;9.42464004765825e-06!GO:0016787;hydrolase activity;9.63349095819624e-06!GO:0032446;protein modification by small protein conjugation;9.80064465871802e-06!GO:0045259;proton-transporting ATP synthase complex;1.0212990360187e-05!GO:0006281;DNA repair;1.02620541534875e-05!GO:0006793;phosphorus metabolic process;1.19816888651274e-05!GO:0006796;phosphate metabolic process;1.19816888651274e-05!GO:0016567;protein ubiquitination;1.26909331102313e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.31082425305251e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.31501242346963e-05!GO:0000245;spliceosome assembly;1.40163850502447e-05!GO:0045786;negative regulation of progression through cell cycle;1.4726610352279e-05!GO:0000151;ubiquitin ligase complex;1.88611922032033e-05!GO:0051170;nuclear import;1.90482916989503e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.32869279048273e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.32869279048273e-05!GO:0045454;cell redox homeostasis;2.48833147344139e-05!GO:0051726;regulation of cell cycle;2.48833147344139e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.52233553264883e-05!GO:0009719;response to endogenous stimulus;2.61299334401954e-05!GO:0006606;protein import into nucleus;2.68433877138982e-05!GO:0000074;regulation of progression through cell cycle;2.77062160114599e-05!GO:0016859;cis-trans isomerase activity;3.48919213616759e-05!GO:0051789;response to protein stimulus;3.48919213616759e-05!GO:0006986;response to unfolded protein;3.48919213616759e-05!GO:0030867;rough endoplasmic reticulum membrane;3.53222074312078e-05!GO:0016310;phosphorylation;3.68084240363089e-05!GO:0030133;transport vesicle;3.72965346764666e-05!GO:0032561;guanyl ribonucleotide binding;4.02882741559677e-05!GO:0019001;guanyl nucleotide binding;4.02882741559677e-05!GO:0005762;mitochondrial large ribosomal subunit;4.80677456236117e-05!GO:0000315;organellar large ribosomal subunit;4.80677456236117e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.90331768663197e-05!GO:0008361;regulation of cell size;5.15846603272077e-05!GO:0031324;negative regulation of cellular metabolic process;5.613032679663e-05!GO:0004298;threonine endopeptidase activity;6.21484053919171e-05!GO:0033116;ER-Golgi intermediate compartment membrane;6.73510247625647e-05!GO:0003724;RNA helicase activity;7.43826800420327e-05!GO:0005791;rough endoplasmic reticulum;8.37891152885839e-05!GO:0048522;positive regulation of cellular process;9.11146946992432e-05!GO:0043566;structure-specific DNA binding;9.23564504313823e-05!GO:0006612;protein targeting to membrane;9.58125007664219e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.76658367657573e-05!GO:0016049;cell growth;0.000113389868779358!GO:0005769;early endosome;0.000121229509191938!GO:0043021;ribonucleoprotein binding;0.000122090837332733!GO:0044262;cellular carbohydrate metabolic process;0.000122416666760084!GO:0006091;generation of precursor metabolites and energy;0.000125880363309246!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000139362028144463!GO:0007243;protein kinase cascade;0.000146581769754644!GO:0005905;coated pit;0.000146581769754644!GO:0030029;actin filament-based process;0.000147208367659783!GO:0016568;chromatin modification;0.00017351281605397!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000177151597871269!GO:0022402;cell cycle process;0.000183548434834709!GO:0030659;cytoplasmic vesicle membrane;0.000186136921683964!GO:0009892;negative regulation of metabolic process;0.000197189017765686!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000200513836885492!GO:0046474;glycerophospholipid biosynthetic process;0.000204266899263312!GO:0051028;mRNA transport;0.000214345733063465!GO:0008250;oligosaccharyl transferase complex;0.000251002857950175!GO:0043623;cellular protein complex assembly;0.000255872611587452!GO:0001558;regulation of cell growth;0.000273920451255593!GO:0005048;signal sequence binding;0.00029311030975327!GO:0004576;oligosaccharyl transferase activity;0.000293431982149332!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000339846006486814!GO:0030663;COPI coated vesicle membrane;0.000359336427919214!GO:0030126;COPI vesicle coat;0.000359336427919214!GO:0006891;intra-Golgi vesicle-mediated transport;0.000359336427919214!GO:0044433;cytoplasmic vesicle part;0.000378837075847576!GO:0016779;nucleotidyltransferase activity;0.000386290050064488!GO:0019867;outer membrane;0.000390633881981699!GO:0006323;DNA packaging;0.00041436355866062!GO:0005885;Arp2/3 protein complex;0.000419235876136075!GO:0051427;hormone receptor binding;0.000424905410362547!GO:0031968;organelle outer membrane;0.000453183329712107!GO:0046489;phosphoinositide biosynthetic process;0.000497926699807882!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000507961847732832!GO:0000314;organellar small ribosomal subunit;0.000524616288653704!GO:0005763;mitochondrial small ribosomal subunit;0.000524616288653704!GO:0030137;COPI-coated vesicle;0.000547627944515966!GO:0018196;peptidyl-asparagine modification;0.000555995721044271!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000555995721044271!GO:0003697;single-stranded DNA binding;0.000662323274993334!GO:0016044;membrane organization and biogenesis;0.000709060986770721!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000709479979135837!GO:0007264;small GTPase mediated signal transduction;0.000741082438628583!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000750558095046387!GO:0015399;primary active transmembrane transporter activity;0.000750558095046387!GO:0035257;nuclear hormone receptor binding;0.00075753335240858!GO:0012506;vesicle membrane;0.00075753335240858!GO:0046467;membrane lipid biosynthetic process;0.000817872852143049!GO:0051920;peroxiredoxin activity;0.000865283521950778!GO:0030658;transport vesicle membrane;0.000897949036180143!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000924973458460963!GO:0006839;mitochondrial transport;0.000968635332818372!GO:0043284;biopolymer biosynthetic process;0.00104737281456442!GO:0008186;RNA-dependent ATPase activity;0.00109144421707431!GO:0030176;integral to endoplasmic reticulum membrane;0.00110283033603873!GO:0006414;translational elongation;0.0011046216581969!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00126233247958329!GO:0007050;cell cycle arrest;0.0013257289315434!GO:0007040;lysosome organization and biogenesis;0.00132810850076019!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00136900606873066!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00137905826523613!GO:0006626;protein targeting to mitochondrion;0.00140386149256031!GO:0043681;protein import into mitochondrion;0.00142971287055485!GO:0006650;glycerophospholipid metabolic process;0.00150315764461959!GO:0016481;negative regulation of transcription;0.00152620838640869!GO:0008610;lipid biosynthetic process;0.00156374155691131!GO:0030027;lamellipodium;0.00163257239315222!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00177244636623487!GO:0009165;nucleotide biosynthetic process;0.00180253650888688!GO:0007033;vacuole organization and biogenesis;0.0018218429837816!GO:0016126;sterol biosynthetic process;0.00183151313101894!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00183885818091317!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0018948358489262!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0018948358489262!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0018948358489262!GO:0031072;heat shock protein binding;0.00191121648411334!GO:0019222;regulation of metabolic process;0.00191784831199172!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00193816722254777!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00193816722254777!GO:0008092;cytoskeletal protein binding;0.00217704144114441!GO:0003899;DNA-directed RNA polymerase activity;0.00217704144114441!GO:0019899;enzyme binding;0.00217704144114441!GO:0048500;signal recognition particle;0.00226232882222124!GO:0030118;clathrin coat;0.00226235235998103!GO:0045045;secretory pathway;0.00232925061699814!GO:0030134;ER to Golgi transport vesicle;0.00233003665918443!GO:0030660;Golgi-associated vesicle membrane;0.00238093808705688!GO:0003729;mRNA binding;0.00240237290554703!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00246430726267878!GO:0030132;clathrin coat of coated pit;0.00255652262035653!GO:0048471;perinuclear region of cytoplasm;0.00261610694514381!GO:0065007;biological regulation;0.00272095905623225!GO:0005741;mitochondrial outer membrane;0.00275236333496123!GO:0030127;COPII vesicle coat;0.00275426556524553!GO:0012507;ER to Golgi transport vesicle membrane;0.00275426556524553!GO:0019843;rRNA binding;0.00278241575045756!GO:0004004;ATP-dependent RNA helicase activity;0.00282719496254087!GO:0006818;hydrogen transport;0.00302483507268519!GO:0051276;chromosome organization and biogenesis;0.00302640215119!GO:0015992;proton transport;0.00320069177287941!GO:0001726;ruffle;0.00329972717384687!GO:0016363;nuclear matrix;0.00330599370281373!GO:0008047;enzyme activator activity;0.00335724627360072!GO:0006497;protein amino acid lipidation;0.0034796943327264!GO:0005813;centrosome;0.00356629639114356!GO:0007006;mitochondrial membrane organization and biogenesis;0.00382476799312549!GO:0003690;double-stranded DNA binding;0.00382636592497544!GO:0030384;phosphoinositide metabolic process;0.0040578778718836!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0040578778718836!GO:0045047;protein targeting to ER;0.0040578778718836!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00428445464459658!GO:0045893;positive regulation of transcription, DNA-dependent;0.00445635452288742!GO:0006509;membrane protein ectodomain proteolysis;0.00448702813554736!GO:0033619;membrane protein proteolysis;0.00448702813554736!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00451811021669!GO:0042802;identical protein binding;0.00464673032874069!GO:0046519;sphingoid metabolic process;0.0046506160905291!GO:0030521;androgen receptor signaling pathway;0.00472467625466597!GO:0065004;protein-DNA complex assembly;0.00474004164705741!GO:0022890;inorganic cation transmembrane transporter activity;0.00478020637990817!GO:0048518;positive regulation of biological process;0.00483348052358243!GO:0051168;nuclear export;0.00492813747237316!GO:0031901;early endosome membrane;0.00522514452929459!GO:0051087;chaperone binding;0.00548247340355952!GO:0004177;aminopeptidase activity;0.00588044881215457!GO:0016197;endosome transport;0.00601594240680802!GO:0008312;7S RNA binding;0.00605708479863822!GO:0006383;transcription from RNA polymerase III promoter;0.00611130304874277!GO:0005774;vacuolar membrane;0.00650754685703162!GO:0043492;ATPase activity, coupled to movement of substances;0.00655475609721351!GO:0035258;steroid hormone receptor binding;0.00657187514534764!GO:0008139;nuclear localization sequence binding;0.00673733173944095!GO:0007030;Golgi organization and biogenesis;0.00681750118118496!GO:0040008;regulation of growth;0.00685732134337217!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00685771501067767!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00693695927078557!GO:0006672;ceramide metabolic process;0.00695545964762325!GO:0042158;lipoprotein biosynthetic process;0.00698611788468495!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00700363181184621!GO:0033673;negative regulation of kinase activity;0.00724371886573625!GO:0006469;negative regulation of protein kinase activity;0.00724371886573625!GO:0044452;nucleolar part;0.00724371886573625!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00733772789441819!GO:0051252;regulation of RNA metabolic process;0.0076183731406433!GO:0006643;membrane lipid metabolic process;0.00773875938085031!GO:0048468;cell development;0.00779296563741035!GO:0030880;RNA polymerase complex;0.00794350843534611!GO:0000278;mitotic cell cycle;0.00800886439749538!GO:0005815;microtubule organizing center;0.00808228680151978!GO:0045941;positive regulation of transcription;0.00808228680151978!GO:0003746;translation elongation factor activity;0.00811453715711004!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00812153531671086!GO:0051348;negative regulation of transferase activity;0.0083367738875544!GO:0046483;heterocycle metabolic process;0.00862918574125337!GO:0007034;vacuolar transport;0.00877662911096364!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00895680236449871!GO:0006352;transcription initiation;0.00907217526117631!GO:0016251;general RNA polymerase II transcription factor activity;0.0091730126231897!GO:0008033;tRNA processing;0.00923992546124467!GO:0006695;cholesterol biosynthetic process;0.00923992546124467!GO:0006260;DNA replication;0.00951676429856399!GO:0006506;GPI anchor biosynthetic process;0.00959398543784876!GO:0009967;positive regulation of signal transduction;0.00959398543784876!GO:0030119;AP-type membrane coat adaptor complex;0.00987933439344324!GO:0007010;cytoskeleton organization and biogenesis;0.00987933439344324!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00992433910007495!GO:0000059;protein import into nucleus, docking;0.00994145388829445!GO:0031902;late endosome membrane;0.00994145388829445!GO:0051128;regulation of cellular component organization and biogenesis;0.00997222945056238!GO:0032940;secretion by cell;0.0101162494522326!GO:0017166;vinculin binding;0.0106668117275918!GO:0019752;carboxylic acid metabolic process;0.0106715854365048!GO:0006082;organic acid metabolic process;0.0106989382068521!GO:0065009;regulation of a molecular function;0.0108519002618348!GO:0043022;ribosome binding;0.0108519002618348!GO:0006892;post-Golgi vesicle-mediated transport;0.011914810556268!GO:0005869;dynactin complex;0.0121337886101739!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0121337886101739!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0121337886101739!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0121574861559304!GO:0031543;peptidyl-proline dioxygenase activity;0.0123559352307547!GO:0000049;tRNA binding;0.0123559352307547!GO:0003711;transcription elongation regulator activity;0.0124128275732845!GO:0006505;GPI anchor metabolic process;0.0124730146560009!GO:0000339;RNA cap binding;0.0124926656271326!GO:0015630;microtubule cytoskeleton;0.0125933921218649!GO:0000096;sulfur amino acid metabolic process;0.0127869309768748!GO:0006595;polyamine metabolic process;0.0129909470225974!GO:0030125;clathrin vesicle coat;0.0129909470225974!GO:0030665;clathrin coated vesicle membrane;0.0129909470225974!GO:0050681;androgen receptor binding;0.0129909470225974!GO:0048144;fibroblast proliferation;0.0129909470225974!GO:0048145;regulation of fibroblast proliferation;0.0129909470225974!GO:0048487;beta-tubulin binding;0.0132505710945763!GO:0019798;procollagen-proline dioxygenase activity;0.0135815566946593!GO:0030145;manganese ion binding;0.013618268443261!GO:0031625;ubiquitin protein ligase binding;0.0136397873417863!GO:0007569;cell aging;0.014352878114023!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.014352878114023!GO:0000428;DNA-directed RNA polymerase complex;0.014352878114023!GO:0031418;L-ascorbic acid binding;0.0144329435915113!GO:0030131;clathrin adaptor complex;0.0147130890497497!GO:0016408;C-acyltransferase activity;0.0148545645299455!GO:0000209;protein polyubiquitination;0.0148766765245322!GO:0003756;protein disulfide isomerase activity;0.0149436250468903!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0149436250468903!GO:0005862;muscle thin filament tropomyosin;0.0153921740072192!GO:0044437;vacuolar part;0.0157664802374374!GO:0051329;interphase of mitotic cell cycle;0.01744161795584!GO:0005586;collagen type III;0.0180388964155625!GO:0016272;prefoldin complex;0.0182018245503706!GO:0005581;collagen;0.0182294887990394!GO:0006402;mRNA catabolic process;0.0182585562523529!GO:0008154;actin polymerization and/or depolymerization;0.0190081362259465!GO:0045892;negative regulation of transcription, DNA-dependent;0.0192203565009884!GO:0005765;lysosomal membrane;0.0194036106220267!GO:0006520;amino acid metabolic process;0.0201631438148691!GO:0051540;metal cluster binding;0.0205160028646046!GO:0051536;iron-sulfur cluster binding;0.0205160028646046!GO:0005832;chaperonin-containing T-complex;0.0207149536157846!GO:0008180;signalosome;0.0207959075129043!GO:0051101;regulation of DNA binding;0.0212688285723125!GO:0006607;NLS-bearing substrate import into nucleus;0.0213272040131758!GO:0007265;Ras protein signal transduction;0.0213688538529985!GO:0048146;positive regulation of fibroblast proliferation;0.0219904677223098!GO:0035035;histone acetyltransferase binding;0.0224436584807849!GO:0051539;4 iron, 4 sulfur cluster binding;0.0224553475788134!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0226141395836812!GO:0006740;NADPH regeneration;0.0226141395836812!GO:0006098;pentose-phosphate shunt;0.0226141395836812!GO:0006807;nitrogen compound metabolic process;0.0226141395836812!GO:0022408;negative regulation of cell-cell adhesion;0.0226541277182716!GO:0005096;GTPase activator activity;0.0227509973761923!GO:0001952;regulation of cell-matrix adhesion;0.0227509973761923!GO:0043488;regulation of mRNA stability;0.0227509973761923!GO:0043487;regulation of RNA stability;0.0227509973761923!GO:0005801;cis-Golgi network;0.023057346869866!GO:0030518;steroid hormone receptor signaling pathway;0.0232516077215989!GO:0006289;nucleotide-excision repair;0.0233895946365649!GO:0043433;negative regulation of transcription factor activity;0.0235845622661073!GO:0006790;sulfur metabolic process;0.0237824416718064!GO:0031529;ruffle organization and biogenesis;0.0244622650526305!GO:0005684;U2-dependent spliceosome;0.0248829090146352!GO:0051098;regulation of binding;0.0255543572458831!GO:0006333;chromatin assembly or disassembly;0.0256151704675976!GO:0051287;NAD binding;0.0264591464097973!GO:0030149;sphingolipid catabolic process;0.026472404636435!GO:0030032;lamellipodium biogenesis;0.026612105686252!GO:0015036;disulfide oxidoreductase activity;0.0271810241597399!GO:0030041;actin filament polymerization;0.0271810241597399!GO:0003684;damaged DNA binding;0.0274112916477971!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0274112916477971!GO:0006644;phospholipid metabolic process;0.0274112916477971!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0274112916477971!GO:0015002;heme-copper terminal oxidase activity;0.0274112916477971!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0274112916477971!GO:0004129;cytochrome-c oxidase activity;0.0274112916477971!GO:0006417;regulation of translation;0.0274112916477971!GO:0007021;tubulin folding;0.0275028958125012!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0278092110889183!GO:0033043;regulation of organelle organization and biogenesis;0.0278092110889183!GO:0015631;tubulin binding;0.0280191319196599!GO:0031301;integral to organelle membrane;0.0282388605845582!GO:0006984;ER-nuclear signaling pathway;0.0283313911017993!GO:0007041;lysosomal transport;0.0284617860992381!GO:0006897;endocytosis;0.0287117094960928!GO:0010324;membrane invagination;0.0287117094960928!GO:0008147;structural constituent of bone;0.0288553342644948!GO:0006778;porphyrin metabolic process;0.0292423007104211!GO:0033013;tetrapyrrole metabolic process;0.0292423007104211!GO:0033559;unsaturated fatty acid metabolic process;0.0292496071498277!GO:0006636;unsaturated fatty acid biosynthetic process;0.0292496071498277!GO:0050811;GABA receptor binding;0.0293167706599016!GO:0006354;RNA elongation;0.029625498953251!GO:0006979;response to oxidative stress;0.0300317337014886!GO:0008632;apoptotic program;0.0303045669709888!GO:0008022;protein C-terminus binding;0.0314104838368611!GO:0030833;regulation of actin filament polymerization;0.0315463438238492!GO:0009308;amine metabolic process;0.0315734371993464!GO:0006007;glucose catabolic process;0.0316232158887159!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0316531024125251!GO:0008484;sulfuric ester hydrolase activity;0.0321103471685384!GO:0045936;negative regulation of phosphate metabolic process;0.0327406496377491!GO:0003702;RNA polymerase II transcription factor activity;0.0333190231569036!GO:0004287;prolyl oligopeptidase activity;0.0334194819806276!GO:0015923;mannosidase activity;0.0335599150768508!GO:0006376;mRNA splice site selection;0.0344645754268222!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0344645754268222!GO:0030508;thiol-disulfide exchange intermediate activity;0.0361565196255825!GO:0030433;ER-associated protein catabolic process;0.0362010468812465!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0362010468812465!GO:0008652;amino acid biosynthetic process;0.0365307321013339!GO:0005669;transcription factor TFIID complex;0.0371338178342458!GO:0016860;intramolecular oxidoreductase activity;0.0378111650464518!GO:0005938;cell cortex;0.0378161303004745!GO:0008097;5S rRNA binding;0.0387931051760617!GO:0000287;magnesium ion binding;0.0404543288401861!GO:0001953;negative regulation of cell-matrix adhesion;0.0405726941984319!GO:0031124;mRNA 3'-end processing;0.04071167278108!GO:0045792;negative regulation of cell size;0.0421485164741775!GO:0004674;protein serine/threonine kinase activity;0.0425587385013731!GO:0051325;interphase;0.0428465245997539!GO:0032906;transforming growth factor-beta2 production;0.0433407899529352!GO:0032909;regulation of transforming growth factor-beta2 production;0.0433407899529352!GO:0005975;carbohydrate metabolic process;0.0437195961161419!GO:0003923;GPI-anchor transamidase activity;0.0441763657067646!GO:0016255;attachment of GPI anchor to protein;0.0441763657067646!GO:0042765;GPI-anchor transamidase complex;0.0441763657067646!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0443569902615015!GO:0004656;procollagen-proline 4-dioxygenase activity;0.044445256230118!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.044445256230118!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0454191204150878!GO:0005637;nuclear inner membrane;0.0457332294001928!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0458191391076731!GO:0030984;kininogen binding;0.046287363198763!GO:0004213;cathepsin B activity;0.046287363198763!GO:0050662;coenzyme binding;0.0467281091467707!GO:0031970;organelle envelope lumen;0.0468378570378823!GO:0042168;heme metabolic process;0.0473926513676446!GO:0006950;response to stress;0.0487989943685355!GO:0005850;eukaryotic translation initiation factor 2 complex;0.049028742988425!GO:0043087;regulation of GTPase activity;0.0498225391124901 | |||
|sample_id=11548 | |sample_id=11548 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=umbilical cord | |sample_tissue=umbilical cord | ||
|top_motifs=HMGA1,2:2.29216472407;TAL1_TCF{3,4,12}:2.0204594457;TEF:1.85728715334;HSF1,2:1.69812906134;FOX{I1,J2}:1.4529556827;HOX{A5,B5}:1.40103884162;XBP1:1.26876873795;MAFB:1.23517160472;EN1,2:1.17308846165;NKX3-1:1.14418499768;MYBL2:1.13917059116;TEAD1:1.10039896141;ADNP_IRX_SIX_ZHX:0.967619985156;DBP:0.960569050586;IKZF1:0.911749326026;GLI1..3:0.905582125293;NFATC1..3:0.900060339785;ATF6:0.898163282506;ESR1:0.897931872659;EVI1:0.880715140483;SPZ1:0.829424506229;NFE2L1:0.792804038643;PAX4:0.775515638656;bHLH_family:0.768800025662;SMAD1..7,9:0.764923461088;HMX1:0.73797132952;SRF:0.719021071063;HES1:0.71884721935;ALX4:0.701231292711;ONECUT1,2:0.694543068727;TP53:0.693326814832;GTF2A1,2:0.682823423602;NFE2L2:0.670057980809;SOX17:0.648102125451;HIF1A:0.640972786585;ZNF238:0.634386731542;MTE{core}:0.607233588865;TFAP2{A,C}:0.601726590568;UFEwm:0.585804799751;NFIX:0.584877791304;STAT5{A,B}:0.579733752661;SREBF1,2:0.571647241752;SOX2:0.56822196076;POU3F1..4:0.535069926608;PAX8:0.504590375834;CRX:0.490791129062;TFCP2:0.487518270967;NR6A1:0.466129668599;RXR{A,B,G}:0.460425482773;LHX3,4:0.460243926718;PRDM1:0.456895554161;GZF1:0.454310066567;TFAP2B:0.437212426958;NHLH1,2:0.422471919594;ALX1:0.418721789681;GFI1B:0.409374126964;NANOG{mouse}:0.395446303535;CDC5L:0.389428452998;TLX2:0.385065206676;MAZ:0.379326711044;ZNF384:0.372864437296;ARID5B:0.371263385758;FOXD3:0.369090253147;HIC1:0.360840006901;KLF4:0.347150855444;GTF2I:0.345661787306;HBP1_HMGB_SSRP1_UBTF:0.339613577386;NR3C1:0.339244099614;ZBTB6:0.336200722117;AHR_ARNT_ARNT2:0.332920517045;EBF1:0.332898755331;XCPE1{core}:0.305517964861;HOX{A4,D4}:0.303634320862;TLX1..3_NFIC{dimer}:0.299806145705;TOPORS:0.296133068716;FOXQ1:0.292720783044;HLF:0.287266239395;PAX6:0.286881153911;POU5F1:0.285347417759;TBX4,5:0.271761777471;SOX5:0.260724403703;ELK1,4_GABP{A,B1}:0.25220307435;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.217023382403;ZFP161:0.208246239231;NKX2-1,4:0.20612571837;AIRE:0.19875837661;NKX6-1,2:0.194456662118;MZF1:0.18224288093;GATA4:0.181475655764;HOXA9_MEIS1:0.179472465719;FOS_FOS{B,L1}_JUN{B,D}:0.176330152217;LEF1_TCF7_TCF7L1,2:0.17057655815;HOX{A6,A7,B6,B7}:0.167785865969;FOSL2:0.158284787418;RFX1:0.15662707353;MYFfamily:0.153831933488;BACH2:0.147566781541;FOXP1:0.131978252641;REST:0.124887801707;RUNX1..3:0.118327024168;HAND1,2:0.104918062105;PRRX1,2:0.104693079304;NKX2-3_NKX2-5:0.1003693126;FOX{D1,D2}:0.0809991232699;PPARG:0.0721905159639;RXRA_VDR{dimer}:0.069336134669;DMAP1_NCOR{1,2}_SMARC:0.0631850621919;HNF1A:0.0543140438589;PAX2:0.0491691894629;EGR1..3:0.0480681453357;PATZ1:0.0273186116852;ZNF148:0.0214130792466;ATF2:0.0171432498656;TFAP4:0.0134214106546;TBP:-0.000181842590188;NKX2-2,8:-0.00469982642849;GATA6:-0.030438481471;ZBTB16:-0.0348144942748;ZNF143:-0.0642820655608;NFE2:-0.0671409694338;SP1:-0.0754693365261;TFDP1:-0.0781241149974;STAT2,4,6:-0.0787933807035;ZIC1..3:-0.0804235204801;MED-1{core}:-0.0809116322284;CEBPA,B_DDIT3:-0.0829149172525;FOXM1:-0.0915252278105;MTF1:-0.115205089188;FOXA2:-0.12347932298;NFIL3:-0.135205083086;PAX5:-0.139480706924;NRF1:-0.142283341646;NFKB1_REL_RELA:-0.143108393872;ELF1,2,4:-0.152579354342;NR1H4:-0.157128683522;POU6F1:-0.162863387156;FOXL1:-0.17450354519;PAX1,9:-0.189183769799;JUN:-0.200640741601;MEF2{A,B,C,D}:-0.204405828018;FOXN1:-0.276781407131;FOXO1,3,4:-0.29089092138;ZNF423:-0.299511529892;IRF1,2:-0.308055678427;AR:-0.334676496489;HNF4A_NR2F1,2:-0.350137673132;ESRRA:-0.35704572899;STAT1,3:-0.376485160165;OCT4_SOX2{dimer}:-0.376500226738;GCM1,2:-0.384480333108;FOX{F1,F2,J1}:-0.384691128898;CREB1:-0.397973801948;ETS1,2:-0.413655973472;FOXP3:-0.420511137828;PDX1:-0.424175349949;CDX1,2,4:-0.426321373831;IRF7:-0.428589406573;RORA:-0.436161065049;YY1:-0.438095526188;ATF5_CREB3:-0.447833874161;SPI1:-0.454436298802;PAX3,7:-0.462579312899;PITX1..3:-0.465233564071;RREB1:-0.487049970052;CUX2:-0.48789096596;NKX3-2:-0.49590732286;SNAI1..3:-0.507185924611;NR5A1,2:-0.517464282623;TGIF1:-0.526733545689;PBX1:-0.532386094532;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.544020957247;NANOG:-0.547496593384;SPIB:-0.550820619615;VSX1,2:-0.563467820079;GFI1:-0.566643245149;ATF4:-0.614072908898;ZEB1:-0.614319461783;BPTF:-0.6343493613;POU1F1:-0.641135560708;LMO2:-0.650076079073;MYOD1:-0.657682569981;MYB:-0.75754904766;SOX{8,9,10}:-0.771808882863;RFX2..5_RFXANK_RFXAP:-0.79442307688;BREu{core}:-0.845194993329;IKZF2:-0.8561231265;EP300:-0.887580466888;NFY{A,B,C}:-1.0369226644;E2F1..5:-1.04134256904;T:-1.25368331026;POU2F1..3:-1.25383787458;RBPJ:-1.37992420216 | |top_motifs=HMGA1,2:2.29216472407;TAL1_TCF{3,4,12}:2.0204594457;TEF:1.85728715334;HSF1,2:1.69812906134;FOX{I1,J2}:1.4529556827;HOX{A5,B5}:1.40103884162;XBP1:1.26876873795;MAFB:1.23517160472;EN1,2:1.17308846165;NKX3-1:1.14418499768;MYBL2:1.13917059116;TEAD1:1.10039896141;ADNP_IRX_SIX_ZHX:0.967619985156;DBP:0.960569050586;IKZF1:0.911749326026;GLI1..3:0.905582125293;NFATC1..3:0.900060339785;ATF6:0.898163282506;ESR1:0.897931872659;EVI1:0.880715140483;SPZ1:0.829424506229;NFE2L1:0.792804038643;PAX4:0.775515638656;bHLH_family:0.768800025662;SMAD1..7,9:0.764923461088;HMX1:0.73797132952;SRF:0.719021071063;HES1:0.71884721935;ALX4:0.701231292711;ONECUT1,2:0.694543068727;TP53:0.693326814832;GTF2A1,2:0.682823423602;NFE2L2:0.670057980809;SOX17:0.648102125451;HIF1A:0.640972786585;ZNF238:0.634386731542;MTE{core}:0.607233588865;TFAP2{A,C}:0.601726590568;UFEwm:0.585804799751;NFIX:0.584877791304;STAT5{A,B}:0.579733752661;SREBF1,2:0.571647241752;SOX2:0.56822196076;POU3F1..4:0.535069926608;PAX8:0.504590375834;CRX:0.490791129062;TFCP2:0.487518270967;NR6A1:0.466129668599;RXR{A,B,G}:0.460425482773;LHX3,4:0.460243926718;PRDM1:0.456895554161;GZF1:0.454310066567;TFAP2B:0.437212426958;NHLH1,2:0.422471919594;ALX1:0.418721789681;GFI1B:0.409374126964;NANOG{mouse}:0.395446303535;CDC5L:0.389428452998;TLX2:0.385065206676;MAZ:0.379326711044;ZNF384:0.372864437296;ARID5B:0.371263385758;FOXD3:0.369090253147;HIC1:0.360840006901;KLF4:0.347150855444;GTF2I:0.345661787306;HBP1_HMGB_SSRP1_UBTF:0.339613577386;NR3C1:0.339244099614;ZBTB6:0.336200722117;AHR_ARNT_ARNT2:0.332920517045;EBF1:0.332898755331;XCPE1{core}:0.305517964861;HOX{A4,D4}:0.303634320862;TLX1..3_NFIC{dimer}:0.299806145705;TOPORS:0.296133068716;FOXQ1:0.292720783044;HLF:0.287266239395;PAX6:0.286881153911;POU5F1:0.285347417759;TBX4,5:0.271761777471;SOX5:0.260724403703;ELK1,4_GABP{A,B1}:0.25220307435;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.217023382403;ZFP161:0.208246239231;NKX2-1,4:0.20612571837;AIRE:0.19875837661;NKX6-1,2:0.194456662118;MZF1:0.18224288093;GATA4:0.181475655764;HOXA9_MEIS1:0.179472465719;FOS_FOS{B,L1}_JUN{B,D}:0.176330152217;LEF1_TCF7_TCF7L1,2:0.17057655815;HOX{A6,A7,B6,B7}:0.167785865969;FOSL2:0.158284787418;RFX1:0.15662707353;MYFfamily:0.153831933488;BACH2:0.147566781541;FOXP1:0.131978252641;REST:0.124887801707;RUNX1..3:0.118327024168;HAND1,2:0.104918062105;PRRX1,2:0.104693079304;NKX2-3_NKX2-5:0.1003693126;FOX{D1,D2}:0.0809991232699;PPARG:0.0721905159639;RXRA_VDR{dimer}:0.069336134669;DMAP1_NCOR{1,2}_SMARC:0.0631850621919;HNF1A:0.0543140438589;PAX2:0.0491691894629;EGR1..3:0.0480681453357;PATZ1:0.0273186116852;ZNF148:0.0214130792466;ATF2:0.0171432498656;TFAP4:0.0134214106546;TBP:-0.000181842590188;NKX2-2,8:-0.00469982642849;GATA6:-0.030438481471;ZBTB16:-0.0348144942748;ZNF143:-0.0642820655608;NFE2:-0.0671409694338;SP1:-0.0754693365261;TFDP1:-0.0781241149974;STAT2,4,6:-0.0787933807035;ZIC1..3:-0.0804235204801;MED-1{core}:-0.0809116322284;CEBPA,B_DDIT3:-0.0829149172525;FOXM1:-0.0915252278105;MTF1:-0.115205089188;FOXA2:-0.12347932298;NFIL3:-0.135205083086;PAX5:-0.139480706924;NRF1:-0.142283341646;NFKB1_REL_RELA:-0.143108393872;ELF1,2,4:-0.152579354342;NR1H4:-0.157128683522;POU6F1:-0.162863387156;FOXL1:-0.17450354519;PAX1,9:-0.189183769799;JUN:-0.200640741601;MEF2{A,B,C,D}:-0.204405828018;FOXN1:-0.276781407131;FOXO1,3,4:-0.29089092138;ZNF423:-0.299511529892;IRF1,2:-0.308055678427;AR:-0.334676496489;HNF4A_NR2F1,2:-0.350137673132;ESRRA:-0.35704572899;STAT1,3:-0.376485160165;OCT4_SOX2{dimer}:-0.376500226738;GCM1,2:-0.384480333108;FOX{F1,F2,J1}:-0.384691128898;CREB1:-0.397973801948;ETS1,2:-0.413655973472;FOXP3:-0.420511137828;PDX1:-0.424175349949;CDX1,2,4:-0.426321373831;IRF7:-0.428589406573;RORA:-0.436161065049;YY1:-0.438095526188;ATF5_CREB3:-0.447833874161;SPI1:-0.454436298802;PAX3,7:-0.462579312899;PITX1..3:-0.465233564071;RREB1:-0.487049970052;CUX2:-0.48789096596;NKX3-2:-0.49590732286;SNAI1..3:-0.507185924611;NR5A1,2:-0.517464282623;TGIF1:-0.526733545689;PBX1:-0.532386094532;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.544020957247;NANOG:-0.547496593384;SPIB:-0.550820619615;VSX1,2:-0.563467820079;GFI1:-0.566643245149;ATF4:-0.614072908898;ZEB1:-0.614319461783;BPTF:-0.6343493613;POU1F1:-0.641135560708;LMO2:-0.650076079073;MYOD1:-0.657682569981;MYB:-0.75754904766;SOX{8,9,10}:-0.771808882863;RFX2..5_RFXANK_RFXAP:-0.79442307688;BREu{core}:-0.845194993329;IKZF2:-0.8561231265;EP300:-0.887580466888;NFY{A,B,C}:-1.0369226644;E2F1..5:-1.04134256904;T:-1.25368331026;POU2F1..3:-1.25383787458;RBPJ:-1.37992420216 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11548-120B9;search_select_hide=table117:FF:11548-120B9 | |||
}} | }} | ||
Latest revision as of 18:08, 4 June 2020
| Name: | Mesenchymal Stem Cells - Wharton's Jelly, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11057 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11057
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11057
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.414 |
| 10 | 10 | 0.552 |
| 100 | 100 | 0.927 |
| 101 | 101 | 0.645 |
| 102 | 102 | 0.183 |
| 103 | 103 | 0.463 |
| 104 | 104 | 0.915 |
| 105 | 105 | 0.139 |
| 106 | 106 | 0.129 |
| 107 | 107 | 0.305 |
| 108 | 108 | 0.48 |
| 109 | 109 | 0.364 |
| 11 | 11 | 0.264 |
| 110 | 110 | 0.679 |
| 111 | 111 | 0.182 |
| 112 | 112 | 0.89 |
| 113 | 113 | 0.00128 |
| 114 | 114 | 0.956 |
| 115 | 115 | 0.22 |
| 116 | 116 | 0.227 |
| 117 | 117 | 0.277 |
| 118 | 118 | 0.271 |
| 119 | 119 | 0.943 |
| 12 | 12 | 0.174 |
| 120 | 120 | 0.971 |
| 121 | 121 | 0.684 |
| 122 | 122 | 0.18 |
| 123 | 123 | 0.0805 |
| 124 | 124 | 0.51 |
| 125 | 125 | 0.468 |
| 126 | 126 | 0.29 |
| 127 | 127 | 0.946 |
| 128 | 128 | 0.565 |
| 129 | 129 | 0.188 |
| 13 | 13 | 0.497 |
| 130 | 130 | 0.769 |
| 131 | 131 | 0.0515 |
| 132 | 132 | 0.643 |
| 133 | 133 | 0.355 |
| 134 | 134 | 0.317 |
| 135 | 135 | 0.619 |
| 136 | 136 | 0.631 |
| 137 | 137 | 0.253 |
| 138 | 138 | 0.982 |
| 139 | 139 | 0.0286 |
| 14 | 14 | 0.0842 |
| 140 | 140 | 0.464 |
| 141 | 141 | 0.0433 |
| 142 | 142 | 0.736 |
| 143 | 143 | 0.756 |
| 144 | 144 | 0.4 |
| 145 | 145 | 0.886 |
| 146 | 146 | 0.685 |
| 147 | 147 | 0.326 |
| 148 | 148 | 0.295 |
| 149 | 149 | 0.0412 |
| 15 | 15 | 0.948 |
| 150 | 150 | 0.228 |
| 151 | 151 | 0.984 |
| 152 | 152 | 0.0238 |
| 153 | 153 | 0.189 |
| 154 | 154 | 0.674 |
| 155 | 155 | 1.78201e-4 |
| 156 | 156 | 0.34 |
| 157 | 157 | 0.681 |
| 158 | 158 | 0.0077 |
| 159 | 159 | 0.288 |
| 16 | 16 | 0.164 |
| 160 | 160 | 0.233 |
| 161 | 161 | 0.704 |
| 162 | 162 | 0.388 |
| 163 | 163 | 0.511 |
| 164 | 164 | 0.129 |
| 165 | 165 | 0.872 |
| 166 | 166 | 0.0515 |
| 167 | 167 | 0.454 |
| 168 | 168 | 0.18 |
| 169 | 169 | 0.75 |
| 17 | 17 | 0.991 |
| 18 | 18 | 0.219 |
| 19 | 19 | 0.715 |
| 2 | 2 | 0.779 |
| 20 | 20 | 0.563 |
| 21 | 21 | 0.843 |
| 22 | 22 | 0.844 |
| 23 | 23 | 0.429 |
| 24 | 24 | 0.843 |
| 25 | 25 | 0.0745 |
| 26 | 26 | 0.256 |
| 27 | 27 | 0.593 |
| 28 | 28 | 0.383 |
| 29 | 29 | 0.718 |
| 3 | 3 | 0.807 |
| 30 | 30 | 0.677 |
| 31 | 31 | 0.986 |
| 32 | 32 | 3.16451e-8 |
| 33 | 33 | 0.643 |
| 34 | 34 | 0.804 |
| 35 | 35 | 0.677 |
| 36 | 36 | 0.377 |
| 37 | 37 | 0.289 |
| 38 | 38 | 0.0534 |
| 39 | 39 | 0.319 |
| 4 | 4 | 0.297 |
| 40 | 40 | 0.198 |
| 41 | 41 | 0.333 |
| 42 | 42 | 0.14 |
| 43 | 43 | 0.404 |
| 44 | 44 | 0.802 |
| 45 | 45 | 0.666 |
| 46 | 46 | 0.516 |
| 47 | 47 | 0.129 |
| 48 | 48 | 0.479 |
| 49 | 49 | 0.0813 |
| 5 | 5 | 0.613 |
| 50 | 50 | 0.936 |
| 51 | 51 | 0.596 |
| 52 | 52 | 0.931 |
| 53 | 53 | 0.333 |
| 54 | 54 | 0.869 |
| 55 | 55 | 0.048 |
| 56 | 56 | 0.566 |
| 57 | 57 | 0.941 |
| 58 | 58 | 0.0209 |
| 59 | 59 | 0.279 |
| 6 | 6 | 0.453 |
| 60 | 60 | 0.322 |
| 61 | 61 | 0.299 |
| 62 | 62 | 0.0795 |
| 63 | 63 | 0.88 |
| 64 | 64 | 0.442 |
| 65 | 65 | 0.243 |
| 66 | 66 | 0.247 |
| 67 | 67 | 0.333 |
| 68 | 68 | 0.351 |
| 69 | 69 | 0.956 |
| 7 | 7 | 0.0582 |
| 70 | 70 | 0.676 |
| 71 | 71 | 0.887 |
| 72 | 72 | 0.542 |
| 73 | 73 | 0.0877 |
| 74 | 74 | 0.336 |
| 75 | 75 | 0.53 |
| 76 | 76 | 0.903 |
| 77 | 77 | 0.88 |
| 78 | 78 | 0.0898 |
| 79 | 79 | 0.0185 |
| 8 | 8 | 0.997 |
| 80 | 80 | 0.614 |
| 81 | 81 | 0.675 |
| 82 | 82 | 0.452 |
| 83 | 83 | 0.898 |
| 84 | 84 | 0.457 |
| 85 | 85 | 0.714 |
| 86 | 86 | 0.953 |
| 87 | 87 | 0.325 |
| 88 | 88 | 0.821 |
| 89 | 89 | 0.349 |
| 9 | 9 | 0.854 |
| 90 | 90 | 0.92 |
| 91 | 91 | 0.89 |
| 92 | 92 | 0.44 |
| 93 | 93 | 0.434 |
| 94 | 94 | 0.816 |
| 95 | 95 | 0.644 |
| 96 | 96 | 0.609 |
| 97 | 97 | 0.138 |
| 98 | 98 | 0.00417 |
| 99 | 99 | 0.046 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11057
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000095 human mesenchymal stem cell of Wharton's jelly sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002569 (mesenchymal stem cell of umbilical cord)
0002568 (mesenchymal stem cell of Wharton's jelly)
UBERON: Anatomy
0002331 (umbilical cord)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0003104 (mesenchyme)
0010317 (germ layer / neural crest derived structure)
0003422 (mesenchyme of umbilical cord)
0009142 (entire embryonic mesenchyme)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000094 (human mesenchymal stem cell of umbilical cord-Sciencell sample)
0000001 (sample)
0000095 (human mesenchymal stem cell of Wharton's jelly sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
