FF:10013-101C4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004902 | ||
|accession_numbers=CAGE;DRX008636;DRR009508;DRZ000933;DRZ002318;DRZ012283;DRZ013668 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000002,UBERON:0000995,UBERON:0003134,UBERON:0000479,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010013 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cervix%252c%2520adult%252c%2520pool1.CNhs10618.10013-101C4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cervix%252c%2520adult%252c%2520pool1.CNhs10618.10013-101C4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cervix%252c%2520adult%252c%2520pool1.CNhs10618.10013-101C4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cervix%252c%2520adult%252c%2520pool1.CNhs10618.10013-101C4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cervix%252c%2520adult%252c%2520pool1.CNhs10618.10013-101C4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10013-101C4 | |id=FF:10013-101C4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010013 | ||
|is_obsolete= | |||
|library_id=CNhs10618 | |||
|library_id_phase_based=2:CNhs10618 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10013 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10013 | |||
|name=cervix, adult, pool1 | |name=cervix, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10618,LSID656,release008,COMPLETED | |profile_hcage=CNhs10618,LSID656,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:AM6000 Lot:0910061 -4 | |rna_catalog_number=Cat:AM6000 Lot:0910061 -4 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=mixed | |sample_ethnicity=mixed | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.92140239709362e-233!GO:0005737;cytoplasm;7.10619064620427e-142!GO:0043226;organelle;2.51988490437105e-132!GO:0043229;intracellular organelle;5.98404032823687e-132!GO:0043231;intracellular membrane-bound organelle;3.38848170019144e-116!GO:0043227;membrane-bound organelle;3.38848170019144e-116!GO:0005515;protein binding;1.15298989773564e-105!GO:0044444;cytoplasmic part;6.18348696672126e-77!GO:0044422;organelle part;2.61984527332278e-68!GO:0044446;intracellular organelle part;5.35092688755871e-67!GO:0043170;macromolecule metabolic process;3.34172420445256e-53!GO:0032991;macromolecular complex;8.55420142277885e-53!GO:0005634;nucleus;4.62796472801846e-51!GO:0044238;primary metabolic process;7.89989052564686e-51!GO:0044237;cellular metabolic process;5.0365450927837e-48!GO:0016043;cellular component organization and biogenesis;1.28180938302642e-45!GO:0030529;ribonucleoprotein complex;5.01144556568026e-45!GO:0003723;RNA binding;7.58894749266442e-42!GO:0044428;nuclear part;4.96683865255373e-41!GO:0043233;organelle lumen;4.53837572205685e-39!GO:0031974;membrane-enclosed lumen;4.53837572205685e-39!GO:0033036;macromolecule localization;1.5031361488485e-35!GO:0019538;protein metabolic process;6.93790109087794e-35!GO:0015031;protein transport;2.76096191267322e-34!GO:0008104;protein localization;1.08683598541823e-32!GO:0045184;establishment of protein localization;1.11311951328711e-32!GO:0010467;gene expression;2.0596032006939e-31!GO:0043283;biopolymer metabolic process;5.87557623325603e-30!GO:0044260;cellular macromolecule metabolic process;2.1294923998148e-29!GO:0044267;cellular protein metabolic process;5.53457974705059e-29!GO:0016071;mRNA metabolic process;1.90228163889806e-28!GO:0043234;protein complex;1.75701374364489e-26!GO:0046907;intracellular transport;2.34136861608491e-26!GO:0006396;RNA processing;2.84455349451408e-26!GO:0008380;RNA splicing;3.19152472464957e-26!GO:0005829;cytosol;4.08550775457131e-26!GO:0031981;nuclear lumen;6.0752911771145e-26!GO:0031090;organelle membrane;1.54735169126852e-25!GO:0005840;ribosome;1.18813710661457e-24!GO:0005739;mitochondrion;1.18813710661457e-24!GO:0006886;intracellular protein transport;4.07533069890647e-24!GO:0065003;macromolecular complex assembly;4.72621296465298e-24!GO:0006397;mRNA processing;1.1809158979349e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.67179949038517e-23!GO:0008134;transcription factor binding;8.33136207555712e-23!GO:0006412;translation;8.45455739702068e-23!GO:0022607;cellular component assembly;3.00258519147811e-22!GO:0003735;structural constituent of ribosome;3.77984849214049e-21!GO:0043228;non-membrane-bound organelle;4.45133379618893e-21!GO:0043232;intracellular non-membrane-bound organelle;4.45133379618893e-21!GO:0031967;organelle envelope;1.23833332295179e-19!GO:0031975;envelope;1.27734966711302e-19!GO:0033279;ribosomal subunit;5.74496071187135e-19!GO:0006996;organelle organization and biogenesis;2.27215309664958e-18!GO:0005681;spliceosome;3.50173516979833e-18!GO:0005654;nucleoplasm;1.36905582253157e-17!GO:0048770;pigment granule;1.78438803333049e-17!GO:0042470;melanosome;1.78438803333049e-17!GO:0016070;RNA metabolic process;2.3824399363504e-17!GO:0051641;cellular localization;2.92865878274604e-17!GO:0044429;mitochondrial part;3.09430568220429e-17!GO:0050794;regulation of cellular process;3.22524206318396e-17!GO:0051649;establishment of cellular localization;5.2181156678884e-17!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.64534169000328e-17!GO:0048523;negative regulation of cellular process;1.5578442126165e-16!GO:0044451;nucleoplasm part;1.89247529632875e-15!GO:0050789;regulation of biological process;2.6278866186191e-15!GO:0003676;nucleic acid binding;4.42414638451099e-15!GO:0016192;vesicle-mediated transport;5.19485498744919e-15!GO:0009059;macromolecule biosynthetic process;1.18474715974788e-14!GO:0048519;negative regulation of biological process;1.42946450265117e-14!GO:0003712;transcription cofactor activity;3.9239047967755e-14!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.07486662550378e-14!GO:0005794;Golgi apparatus;1.13606412964765e-13!GO:0044445;cytosolic part;2.23054102676242e-13!GO:0006366;transcription from RNA polymerase II promoter;3.64958885894304e-13!GO:0006119;oxidative phosphorylation;5.48165258492119e-13!GO:0005783;endoplasmic reticulum;5.94971701633298e-13!GO:0048193;Golgi vesicle transport;6.37344937555656e-13!GO:0016564;transcription repressor activity;2.20085960030705e-12!GO:0009058;biosynthetic process;3.13714756757711e-12!GO:0005740;mitochondrial envelope;3.6648433079663e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;3.6648433079663e-12!GO:0019866;organelle inner membrane;4.58877854402135e-12!GO:0006511;ubiquitin-dependent protein catabolic process;5.50602934532241e-12!GO:0031966;mitochondrial membrane;5.50602934532241e-12!GO:0019941;modification-dependent protein catabolic process;7.45831849045738e-12!GO:0043632;modification-dependent macromolecule catabolic process;7.45831849045738e-12!GO:0022618;protein-RNA complex assembly;8.33790061060265e-12!GO:0006457;protein folding;1.03850543366455e-11!GO:0006605;protein targeting;1.10693203319099e-11!GO:0044249;cellular biosynthetic process;1.12375931580915e-11!GO:0044257;cellular protein catabolic process;1.25669542100469e-11!GO:0012505;endomembrane system;3.84980607368461e-11!GO:0005743;mitochondrial inner membrane;6.62338297299891e-11!GO:0000166;nucleotide binding;6.62338297299891e-11!GO:0006512;ubiquitin cycle;9.00810513042145e-11!GO:0016604;nuclear body;1.32195901675931e-10!GO:0065007;biological regulation;1.32612679507457e-10!GO:0006913;nucleocytoplasmic transport;1.72638695855525e-10!GO:0015935;small ribosomal subunit;2.72754112086858e-10!GO:0016462;pyrophosphatase activity;3.26720855812822e-10!GO:0006461;protein complex assembly;3.53576630512593e-10!GO:0017111;nucleoside-triphosphatase activity;3.95759220063635e-10!GO:0012501;programmed cell death;3.95759220063635e-10!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.27366258169085e-10!GO:0051169;nuclear transport;4.93163260570844e-10!GO:0016817;hydrolase activity, acting on acid anhydrides;5.3223049321914e-10!GO:0016607;nuclear speck;5.38130149741192e-10!GO:0044265;cellular macromolecule catabolic process;6.04919715838264e-10!GO:0043285;biopolymer catabolic process;6.30009991115137e-10!GO:0031324;negative regulation of cellular metabolic process;6.46791311742819e-10!GO:0044455;mitochondrial membrane part;6.93850402640437e-10!GO:0016481;negative regulation of transcription;7.22183008628663e-10!GO:0006915;apoptosis;8.86522224096471e-10!GO:0008219;cell death;1.07258199638756e-09!GO:0016265;death;1.07258199638756e-09!GO:0008565;protein transporter activity;1.19175154623402e-09!GO:0043687;post-translational protein modification;1.43752736099975e-09!GO:0015934;large ribosomal subunit;1.54430273960458e-09!GO:0030036;actin cytoskeleton organization and biogenesis;1.54430273960458e-09!GO:0008135;translation factor activity, nucleic acid binding;1.57783527775119e-09!GO:0030163;protein catabolic process;1.58824853892879e-09!GO:0043412;biopolymer modification;1.79025060175486e-09!GO:0005746;mitochondrial respiratory chain;2.82255006260943e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.30486611888956e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.94255400055377e-09!GO:0000502;proteasome complex (sensu Eukaryota);5.08085287370005e-09!GO:0008361;regulation of cell size;6.92270806468201e-09!GO:0006464;protein modification process;7.39249667296697e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.4666200163248e-09!GO:0016874;ligase activity;7.77962981986005e-09!GO:0016049;cell growth;8.50262267799582e-09!GO:0031988;membrane-bound vesicle;1.03851059696536e-08!GO:0009892;negative regulation of metabolic process;1.04856395132177e-08!GO:0006259;DNA metabolic process;1.21118042990245e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;1.2383153078784e-08!GO:0000375;RNA splicing, via transesterification reactions;1.2383153078784e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.2383153078784e-08!GO:0005793;ER-Golgi intermediate compartment;1.24933314389398e-08!GO:0005730;nucleolus;1.2838306496809e-08!GO:0050136;NADH dehydrogenase (quinone) activity;1.33782761290321e-08!GO:0003954;NADH dehydrogenase activity;1.33782761290321e-08!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.33782761290321e-08!GO:0031982;vesicle;1.35266972176399e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.41881277136827e-08!GO:0016023;cytoplasmic membrane-bound vesicle;1.92350106329368e-08!GO:0005635;nuclear envelope;2.84799628071852e-08!GO:0031252;leading edge;2.88863099856634e-08!GO:0031410;cytoplasmic vesicle;2.97224872727934e-08!GO:0006446;regulation of translational initiation;3.64354440617911e-08!GO:0003714;transcription corepressor activity;4.09046040770261e-08!GO:0017038;protein import;4.81574965635431e-08!GO:0051082;unfolded protein binding;5.95322550893511e-08!GO:0044432;endoplasmic reticulum part;6.38316781431685e-08!GO:0008092;cytoskeletal protein binding;6.707228618615e-08!GO:0019222;regulation of metabolic process;6.77958168309079e-08!GO:0003743;translation initiation factor activity;7.80911997442634e-08!GO:0030029;actin filament-based process;8.08756523806822e-08!GO:0009057;macromolecule catabolic process;1.19765835172695e-07!GO:0031965;nuclear membrane;1.63197165901311e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.6690842624651e-07!GO:0045892;negative regulation of transcription, DNA-dependent;1.69306703310084e-07!GO:0007264;small GTPase mediated signal transduction;2.14160295405299e-07!GO:0044248;cellular catabolic process;2.39892535818925e-07!GO:0003713;transcription coactivator activity;2.39892535818925e-07!GO:0001558;regulation of cell growth;2.74007987793329e-07!GO:0006606;protein import into nucleus;3.14255375002959e-07!GO:0016563;transcription activator activity;3.2776077816746e-07!GO:0008639;small protein conjugating enzyme activity;4.34645085260655e-07!GO:0031980;mitochondrial lumen;4.75984200731646e-07!GO:0005759;mitochondrial matrix;4.75984200731646e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;5.08370076084229e-07!GO:0051170;nuclear import;5.11530979998673e-07!GO:0030964;NADH dehydrogenase complex (quinone);5.14532241230806e-07!GO:0045271;respiratory chain complex I;5.14532241230806e-07!GO:0005747;mitochondrial respiratory chain complex I;5.14532241230806e-07!GO:0042775;organelle ATP synthesis coupled electron transport;5.27173793623336e-07!GO:0042773;ATP synthesis coupled electron transport;5.27173793623336e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.33780851519573e-07!GO:0006413;translational initiation;5.39566604950015e-07!GO:0004842;ubiquitin-protein ligase activity;5.59555880222806e-07!GO:0003924;GTPase activity;6.40574164670765e-07!GO:0032553;ribonucleotide binding;9.88582488174519e-07!GO:0032555;purine ribonucleotide binding;9.88582488174519e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.02450437363326e-06!GO:0019787;small conjugating protein ligase activity;1.18958586353314e-06!GO:0019899;enzyme binding;1.25708096948966e-06!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.41233157227582e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.46547740174484e-06!GO:0017076;purine nucleotide binding;1.55615589845257e-06!GO:0005768;endosome;1.82676119816765e-06!GO:0006323;DNA packaging;2.1281604379598e-06!GO:0005525;GTP binding;2.22609928855324e-06!GO:0051246;regulation of protein metabolic process;3.19499370894631e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.55439662382499e-06!GO:0045786;negative regulation of progression through cell cycle;5.31268449041774e-06!GO:0006793;phosphorus metabolic process;1.01864910466139e-05!GO:0006796;phosphate metabolic process;1.01864910466139e-05!GO:0005761;mitochondrial ribosome;1.1662728574026e-05!GO:0000313;organellar ribosome;1.1662728574026e-05!GO:0040008;regulation of growth;1.22895552013872e-05!GO:0043069;negative regulation of programmed cell death;1.43303275279593e-05!GO:0007010;cytoskeleton organization and biogenesis;1.43303275279593e-05!GO:0006916;anti-apoptosis;1.46217247043824e-05!GO:0043566;structure-specific DNA binding;1.4788711860885e-05!GO:0009060;aerobic respiration;1.54167267698442e-05!GO:0048475;coated membrane;1.54258333798205e-05!GO:0030117;membrane coat;1.54258333798205e-05!GO:0031323;regulation of cellular metabolic process;1.56095083473474e-05!GO:0032561;guanyl ribonucleotide binding;1.56095083473474e-05!GO:0019001;guanyl nucleotide binding;1.56095083473474e-05!GO:0016568;chromatin modification;1.56370079568517e-05!GO:0030120;vesicle coat;1.57033998923329e-05!GO:0030662;coated vesicle membrane;1.57033998923329e-05!GO:0045333;cellular respiration;1.57406079022117e-05!GO:0044453;nuclear membrane part;1.90071671115868e-05!GO:0051789;response to protein stimulus;1.90988790329374e-05!GO:0006986;response to unfolded protein;1.90988790329374e-05!GO:0015986;ATP synthesis coupled proton transport;1.92216414166845e-05!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.92216414166845e-05!GO:0009055;electron carrier activity;2.34306275887283e-05!GO:0043066;negative regulation of apoptosis;2.34505317178542e-05!GO:0006350;transcription;2.64208497592967e-05!GO:0048522;positive regulation of cellular process;2.93559150176449e-05!GO:0007243;protein kinase cascade;3.32508511862136e-05!GO:0005788;endoplasmic reticulum lumen;3.63974671895889e-05!GO:0016881;acid-amino acid ligase activity;3.66515636999629e-05!GO:0019829;cation-transporting ATPase activity;3.89447504358408e-05!GO:0016044;membrane organization and biogenesis;4.19336353386231e-05!GO:0016310;phosphorylation;4.2033294998141e-05!GO:0010468;regulation of gene expression;4.2044808999691e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.13050134591737e-05!GO:0006613;cotranslational protein targeting to membrane;5.85872841027922e-05!GO:0003779;actin binding;6.49758836848799e-05!GO:0050657;nucleic acid transport;6.68303709836792e-05!GO:0051236;establishment of RNA localization;6.68303709836792e-05!GO:0050658;RNA transport;6.68303709836792e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.73098932855539e-05!GO:0030027;lamellipodium;6.9940553208688e-05!GO:0006403;RNA localization;6.9940553208688e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.18274429831635e-05!GO:0003702;RNA polymerase II transcription factor activity;7.50766180558263e-05!GO:0005789;endoplasmic reticulum membrane;7.83256113572244e-05!GO:0005770;late endosome;8.2083508818568e-05!GO:0042981;regulation of apoptosis;8.85210441055358e-05!GO:0051276;chromosome organization and biogenesis;9.16871765574477e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.31338303542136e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.42136713840505e-05!GO:0005912;adherens junction;9.86838472474083e-05!GO:0043067;regulation of programmed cell death;9.90804902091798e-05!GO:0005773;vacuole;9.967653893875e-05!GO:0051427;hormone receptor binding;0.000115011172576102!GO:0007265;Ras protein signal transduction;0.000118681476876867!GO:0000245;spliceosome assembly;0.000120455254019816!GO:0005856;cytoskeleton;0.000125014511114192!GO:0044431;Golgi apparatus part;0.000127691293653089!GO:0005643;nuclear pore;0.000133922215909155!GO:0016469;proton-transporting two-sector ATPase complex;0.000133922215909155!GO:0016197;endosome transport;0.000134036493265887!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000147891613721039!GO:0006099;tricarboxylic acid cycle;0.00015478189742149!GO:0046356;acetyl-CoA catabolic process;0.00015478189742149!GO:0051186;cofactor metabolic process;0.000179337502863021!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000187738927555936!GO:0004386;helicase activity;0.000189351921947687!GO:0035257;nuclear hormone receptor binding;0.000215342799607674!GO:0016887;ATPase activity;0.000215343049953311!GO:0000151;ubiquitin ligase complex;0.000219434970696308!GO:0009966;regulation of signal transduction;0.000226695249404287!GO:0048518;positive regulation of biological process;0.000230324170658321!GO:0003697;single-stranded DNA binding;0.000242527568466072!GO:0006333;chromatin assembly or disassembly;0.00024581443639428!GO:0045259;proton-transporting ATP synthase complex;0.000247052486603844!GO:0005798;Golgi-associated vesicle;0.00025425463024664!GO:0000323;lytic vacuole;0.000264516987886316!GO:0005764;lysosome;0.000264516987886316!GO:0048471;perinuclear region of cytoplasm;0.000268975085912534!GO:0008026;ATP-dependent helicase activity;0.000274392921392528!GO:0032774;RNA biosynthetic process;0.000274392921392528!GO:0006351;transcription, DNA-dependent;0.000277398220441492!GO:0030133;transport vesicle;0.000296000814558661!GO:0044440;endosomal part;0.000297780883674036!GO:0010008;endosome membrane;0.000297780883674036!GO:0009142;nucleoside triphosphate biosynthetic process;0.000297780883674036!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000297780883674036!GO:0005791;rough endoplasmic reticulum;0.000307549138022244!GO:0032446;protein modification by small protein conjugation;0.000310416435603096!GO:0051726;regulation of cell cycle;0.000316655906999966!GO:0000074;regulation of progression through cell cycle;0.00032130382172733!GO:0007049;cell cycle;0.000355632077315401!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000397673208454277!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000397673208454277!GO:0045893;positive regulation of transcription, DNA-dependent;0.000402655528483456!GO:0008286;insulin receptor signaling pathway;0.000410510530237351!GO:0007167;enzyme linked receptor protein signaling pathway;0.000446047666117313!GO:0006754;ATP biosynthetic process;0.00045141951177146!GO:0006753;nucleoside phosphate metabolic process;0.00045141951177146!GO:0009109;coenzyme catabolic process;0.00051834748211667!GO:0009199;ribonucleoside triphosphate metabolic process;0.000536207112573401!GO:0016567;protein ubiquitination;0.000536207112573401!GO:0003724;RNA helicase activity;0.000543951069910264!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000573822892983287!GO:0009141;nucleoside triphosphate metabolic process;0.000583935757229355!GO:0005839;proteasome core complex (sensu Eukaryota);0.000589092402947133!GO:0030532;small nuclear ribonucleoprotein complex;0.000614750069676377!GO:0045449;regulation of transcription;0.000637166603979325!GO:0005769;early endosome;0.000641046993374765!GO:0031589;cell-substrate adhesion;0.000641046993374765!GO:0045941;positive regulation of transcription;0.000641872106594149!GO:0042623;ATPase activity, coupled;0.00069118360368728!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000697833958538122!GO:0009144;purine nucleoside triphosphate metabolic process;0.000697833958538122!GO:0006732;coenzyme metabolic process;0.000708830086276057!GO:0001726;ruffle;0.000720498677601129!GO:0009259;ribonucleotide metabolic process;0.000739582455310634!GO:0030867;rough endoplasmic reticulum membrane;0.000764257232451379!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000769258706607034!GO:0000902;cell morphogenesis;0.000781051697596744!GO:0032989;cellular structure morphogenesis;0.000781051697596744!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000801360056916885!GO:0005083;small GTPase regulator activity;0.00081250638196558!GO:0042254;ribosome biogenesis and assembly;0.000843430444681334!GO:0009150;purine ribonucleotide metabolic process;0.000847745664124419!GO:0045792;negative regulation of cell size;0.000868616001972768!GO:0006084;acetyl-CoA metabolic process;0.000868616001972768!GO:0042802;identical protein binding;0.000886320854803885!GO:0051028;mRNA transport;0.000911074586465871!GO:0009056;catabolic process;0.000911074586465871!GO:0003690;double-stranded DNA binding;0.000941412411529265!GO:0007160;cell-matrix adhesion;0.000952744975840265!GO:0005667;transcription factor complex;0.000977959334610623!GO:0015078;hydrogen ion transmembrane transporter activity;0.00101099676034772!GO:0043623;cellular protein complex assembly;0.00101099676034772!GO:0046034;ATP metabolic process;0.00101842577425157!GO:0051187;cofactor catabolic process;0.00103074822423615!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00103074822423615!GO:0005524;ATP binding;0.00107694433778212!GO:0030518;steroid hormone receptor signaling pathway;0.00107964629352784!GO:0009152;purine ribonucleotide biosynthetic process;0.00109547391539952!GO:0006402;mRNA catabolic process;0.00110282384037089!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00110348459375627!GO:0032559;adenyl ribonucleotide binding;0.00116209821868144!GO:0030308;negative regulation of cell growth;0.00119936881277017!GO:0051128;regulation of cellular component organization and biogenesis;0.00121605608232785!GO:0009260;ribonucleotide biosynthetic process;0.00128875125197162!GO:0046930;pore complex;0.00133096551904468!GO:0065004;protein-DNA complex assembly;0.00141315739904059!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00159939259188792!GO:0006163;purine nucleotide metabolic process;0.00160030584376838!GO:0006897;endocytosis;0.00165085935347503!GO:0010324;membrane invagination;0.00165085935347503!GO:0030554;adenyl nucleotide binding;0.00175154990621126!GO:0007242;intracellular signaling cascade;0.00176253876609837!GO:0016859;cis-trans isomerase activity;0.001796417113085!GO:0065002;intracellular protein transport across a membrane;0.00184812528759026!GO:0006950;response to stress;0.00188365263980576!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00188365263980576!GO:0033116;ER-Golgi intermediate compartment membrane;0.00198223411311308!GO:0044420;extracellular matrix part;0.00206974505051005!GO:0006612;protein targeting to membrane;0.00210885251124431!GO:0006355;regulation of transcription, DNA-dependent;0.00211440227194084!GO:0004298;threonine endopeptidase activity;0.00211582681899558!GO:0015980;energy derivation by oxidation of organic compounds;0.00214355320580432!GO:0008250;oligosaccharyl transferase complex;0.00217718704499495!GO:0006164;purine nucleotide biosynthetic process;0.00218204103404607!GO:0008154;actin polymerization and/or depolymerization;0.00226016449012825!GO:0001944;vasculature development;0.00251404667456163!GO:0006891;intra-Golgi vesicle-mediated transport;0.00255934853416519!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00268815293919763!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00270211104047327!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00282326114958557!GO:0030216;keratinocyte differentiation;0.00282754841664435!GO:0033673;negative regulation of kinase activity;0.0028846703670951!GO:0006469;negative regulation of protein kinase activity;0.0028846703670951!GO:0043021;ribonucleoprotein binding;0.00288907573102127!GO:0005885;Arp2/3 protein complex;0.00294494413780034!GO:0048468;cell development;0.00295728093469534!GO:0035258;steroid hormone receptor binding;0.00295873401856383!GO:0001568;blood vessel development;0.00297754925838686!GO:0008287;protein serine/threonine phosphatase complex;0.00316739931187068!GO:0051920;peroxiredoxin activity;0.00316739931187068!GO:0008047;enzyme activator activity;0.0034797349737095!GO:0030041;actin filament polymerization;0.00351221555043003!GO:0051270;regulation of cell motility;0.00351558776958683!GO:0005905;coated pit;0.00351558776958683!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.00356190869784927!GO:0008283;cell proliferation;0.00379639785308874!GO:0006607;NLS-bearing substrate import into nucleus;0.00381119435802493!GO:0045045;secretory pathway;0.00390456455005884!GO:0006974;response to DNA damage stimulus;0.00401022835752532!GO:0007266;Rho protein signal transduction;0.00414321291116944!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00417349807376556!GO:0004667;prostaglandin-D synthase activity;0.00417349807376556!GO:0050802;circadian sleep/wake cycle, sleep;0.00417349807376556!GO:0022410;circadian sleep/wake cycle process;0.00417349807376556!GO:0042749;regulation of circadian sleep/wake cycle;0.00417349807376556!GO:0000139;Golgi membrane;0.00434350188351747!GO:0004576;oligosaccharyl transferase activity;0.00443579383858688!GO:0008186;RNA-dependent ATPase activity;0.00447676570471418!GO:0005813;centrosome;0.00452858450664233!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00471218879893283!GO:0004812;aminoacyl-tRNA ligase activity;0.00471218879893283!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00471218879893283!GO:0030695;GTPase regulator activity;0.00472294925524501!GO:0006892;post-Golgi vesicle-mediated transport;0.00504143037441379!GO:0001533;cornified envelope;0.00507630451556493!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00516526453285527!GO:0019904;protein domain specific binding;0.00529962712669816!GO:0051168;nuclear export;0.00551288630261482!GO:0051087;chaperone binding;0.00551491940065254!GO:0045926;negative regulation of growth;0.00567323723897491!GO:0008654;phospholipid biosynthetic process;0.00569082254646549!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0059243868129777!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0059243868129777!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0059243868129777!GO:0017166;vinculin binding;0.00609348996150493!GO:0005100;Rho GTPase activator activity;0.00631194564172286!GO:0005741;mitochondrial outer membrane;0.00652467297714377!GO:0030134;ER to Golgi transport vesicle;0.00712609382527117!GO:0030522;intracellular receptor-mediated signaling pathway;0.00724890289936517!GO:0030127;COPII vesicle coat;0.0075767018810419!GO:0012507;ER to Golgi transport vesicle membrane;0.0075767018810419!GO:0051348;negative regulation of transferase activity;0.0077152600531144!GO:0016363;nuclear matrix;0.00775136111768321!GO:0051674;localization of cell;0.0080186181788432!GO:0006928;cell motility;0.0080186181788432!GO:0009967;positive regulation of signal transduction;0.00819905249881428!GO:0005815;microtubule organizing center;0.00821260447626727!GO:0030663;COPI coated vesicle membrane;0.00821260447626727!GO:0030126;COPI vesicle coat;0.00821260447626727!GO:0043038;amino acid activation;0.00821260447626727!GO:0006418;tRNA aminoacylation for protein translation;0.00821260447626727!GO:0043039;tRNA aminoacylation;0.00821260447626727!GO:0005048;signal sequence binding;0.00829425381823966!GO:0005096;GTPase activator activity;0.00833988744149136!GO:0003729;mRNA binding;0.00833988744149136!GO:0043488;regulation of mRNA stability;0.00843521019005437!GO:0043487;regulation of RNA stability;0.00843521019005437!GO:0030521;androgen receptor signaling pathway;0.00895754536230448!GO:0048500;signal recognition particle;0.00925275794503716!GO:0005159;insulin-like growth factor receptor binding;0.0093849445025515!GO:0032940;secretion by cell;0.0096566661187295!GO:0051287;NAD binding;0.0096566661187295!GO:0019843;rRNA binding;0.00969850126422827!GO:0000785;chromatin;0.0097802235692703!GO:0031968;organelle outer membrane;0.00995666772300181!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0100284415777777!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0101093391121628!GO:0006401;RNA catabolic process;0.0101554401272308!GO:0051252;regulation of RNA metabolic process;0.0109396758701523!GO:0006979;response to oxidative stress;0.0111192821307985!GO:0051235;maintenance of localization;0.0111600510555234!GO:0004004;ATP-dependent RNA helicase activity;0.0113767334857187!GO:0016584;nucleosome positioning;0.0113767334857187!GO:0007050;cell cycle arrest;0.0116944440086802!GO:0019867;outer membrane;0.012013864853946!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0121646284310619!GO:0005925;focal adhesion;0.0123130183411357!GO:0005938;cell cortex;0.0123834050886445!GO:0001666;response to hypoxia;0.0124954822601853!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0124954822601853!GO:0040011;locomotion;0.0126314266891599!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.0129805091986303!GO:0016072;rRNA metabolic process;0.0133072104933727!GO:0048514;blood vessel morphogenesis;0.0136481137027445!GO:0006364;rRNA processing;0.0137194312129733!GO:0019838;growth factor binding;0.0137194312129733!GO:0040012;regulation of locomotion;0.0139668918353999!GO:0030100;regulation of endocytosis;0.0145405609630949!GO:0015630;microtubule cytoskeleton;0.0145652560231428!GO:0009719;response to endogenous stimulus;0.0145879392031386!GO:0008601;protein phosphatase type 2A regulator activity;0.0147830865569305!GO:0065009;regulation of a molecular function;0.0154538294973312!GO:0005913;cell-cell adherens junction;0.0155506803482902!GO:0007005;mitochondrion organization and biogenesis;0.015611998730563!GO:0043034;costamere;0.0158553495915267!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.016034396207919!GO:0008139;nuclear localization sequence binding;0.0161952360899015!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0165522117499893!GO:0006752;group transfer coenzyme metabolic process;0.0165522117499893!GO:0006414;translational elongation;0.0165562035498584!GO:0030118;clathrin coat;0.0170785154647123!GO:0018196;peptidyl-asparagine modification;0.0172196050871752!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0172196050871752!GO:0005581;collagen;0.0176045223493629!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0177706825846739!GO:0030132;clathrin coat of coated pit;0.0179672608131228!GO:0030137;COPI-coated vesicle;0.018182826650386!GO:0030055;cell-matrix junction;0.0183029262477305!GO:0031901;early endosome membrane;0.0184202253420402!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0188488517414688!GO:0045047;protein targeting to ER;0.0188488517414688!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0188644609179652!GO:0005924;cell-substrate adherens junction;0.0189932751341351!GO:0030658;transport vesicle membrane;0.0202511556096663!GO:0005099;Ras GTPase activator activity;0.0208757407971308!GO:0001525;angiogenesis;0.0214238986643024!GO:0005869;dynactin complex;0.0227553519488912!GO:0000159;protein phosphatase type 2A complex;0.0229398074991165!GO:0008312;7S RNA binding;0.0238027238542372!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0238190265878118!GO:0031072;heat shock protein binding;0.0240236505912292!GO:0006376;mRNA splice site selection;0.0257294416216931!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0257294416216931!GO:0046983;protein dimerization activity;0.0258226297687789!GO:0006334;nucleosome assembly;0.0258634604279962!GO:0004860;protein kinase inhibitor activity;0.0260016104000198!GO:0001725;stress fiber;0.0263070421393602!GO:0032432;actin filament bundle;0.0263070421393602!GO:0031625;ubiquitin protein ligase binding;0.027083048529804!GO:0051101;regulation of DNA binding;0.0275018704026828!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0278821246036453!GO:0033043;regulation of organelle organization and biogenesis;0.0278821246036453!GO:0005762;mitochondrial large ribosomal subunit;0.0280186395737513!GO:0000315;organellar large ribosomal subunit;0.0280186395737513!GO:0035035;histone acetyltransferase binding;0.02817181497858!GO:0000118;histone deacetylase complex;0.0282450777874201!GO:0015629;actin cytoskeleton;0.0287826206858325!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0295556044926025!GO:0001516;prostaglandin biosynthetic process;0.0295556044926025!GO:0046457;prostanoid biosynthetic process;0.0295556044926025!GO:0008147;structural constituent of bone;0.0296847098391105!GO:0000059;protein import into nucleus, docking;0.0298650687964146!GO:0006984;ER-nuclear signaling pathway;0.0302454765544378!GO:0031902;late endosome membrane;0.0302454765544378!GO:0022402;cell cycle process;0.0314375319876241!GO:0001527;microfibril;0.0338568294957778!GO:0047485;protein N-terminus binding;0.0346696118871111!GO:0005586;collagen type III;0.0350394760805776!GO:0004722;protein serine/threonine phosphatase activity;0.0362622734235298!GO:0030659;cytoplasmic vesicle membrane;0.0365520561771692!GO:0030674;protein binding, bridging;0.0365997510104021!GO:0030235;nitric-oxide synthase regulator activity;0.0367488729739182!GO:0012506;vesicle membrane;0.0367815700469978!GO:0030241;muscle thick filament assembly;0.0372926976591393!GO:0031034;myosin filament assembly;0.0372926976591393!GO:0031033;myosin filament assembly or disassembly;0.0372926976591393!GO:0048739;cardiac muscle fiber development;0.0372926976591393!GO:0016853;isomerase activity;0.0375544551412588!GO:0005862;muscle thin filament tropomyosin;0.0377914132582457!GO:0048487;beta-tubulin binding;0.0380725893948599!GO:0043022;ribosome binding;0.0383769450624738!GO:0031529;ruffle organization and biogenesis;0.0385703462604901!GO:0008097;5S rRNA binding;0.0395591778203061!GO:0030162;regulation of proteolysis;0.0401775610473089!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0404618139012738!GO:0051188;cofactor biosynthetic process;0.0405772838007879!GO:0007028;cytoplasm organization and biogenesis;0.040602723166265!GO:0007004;telomere maintenance via telomerase;0.0410403043287792!GO:0030032;lamellipodium biogenesis;0.0412426783051557!GO:0031497;chromatin assembly;0.0417575309309805!GO:0006260;DNA replication;0.0428737315841285!GO:0048660;regulation of smooth muscle cell proliferation;0.0429933677587882!GO:0006650;glycerophospholipid metabolic process;0.0430855346919439!GO:0006693;prostaglandin metabolic process;0.0433543944888494!GO:0006692;prostanoid metabolic process;0.0433543944888494!GO:0000060;protein import into nucleus, translocation;0.0433543944888494!GO:0050811;GABA receptor binding;0.0442005267401974!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0442005267401974!GO:0048659;smooth muscle cell proliferation;0.0459800736593497!GO:0006281;DNA repair;0.0460934973348629!GO:0014706;striated muscle development;0.0460934973348629!GO:0031272;regulation of pseudopodium formation;0.0463183844729488!GO:0031269;pseudopodium formation;0.0463183844729488!GO:0031344;regulation of cell projection organization and biogenesis;0.0463183844729488!GO:0031268;pseudopodium organization and biogenesis;0.0463183844729488!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0463183844729488!GO:0031274;positive regulation of pseudopodium formation;0.0463183844729488!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0471687510802905!GO:0007569;cell aging;0.0473029502195528!GO:0003682;chromatin binding;0.0476723179455718!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0481233144728196!GO:0009117;nucleotide metabolic process;0.0490601229769382 | |||
|sample_id=10013 | |sample_id=10013 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=cervix | |sample_tissue=cervix | ||
|top_motifs=TFAP2{A,C}:2.78841791972;HBP1_HMGB_SSRP1_UBTF:2.66418199955;TBP:2.59701902244;MYBL2:2.56406023213;MZF1:2.44824711218;MAZ:2.37605828308;SRF:2.32687504132;PRDM1:2.0414836141;RBPJ:1.9928431499;GTF2I:1.96508492723;NFATC1..3:1.96456406655;MYFfamily:1.96328329408;PATZ1:1.94656173308;RREB1:1.9301016147;T:1.92369965392;SP1:1.89683222458;SMAD1..7,9:1.87849452569;SPZ1:1.8580446519;ZNF238:1.80054918696;TFCP2:1.78166297792;TFAP4:1.77962060421;MED-1{core}:1.62538099308;FOX{D1,D2}:1.60862112423;HMX1:1.58635573867;TLX1..3_NFIC{dimer}:1.57951442735;IKZF1:1.55299649151;FOXO1,3,4:1.52068051217;XCPE1{core}:1.51087171808;GCM1,2:1.47423587098;ESR1:1.43125832553;ZNF384:1.42820423251;PAX5:1.41840292539;MTE{core}:1.36168130102;EP300:1.34604240096;ZIC1..3:1.32620001478;HIC1:1.31541993312;XBP1:1.31185547712;TAL1_TCF{3,4,12}:1.29909101468;KLF4:1.27090424711;TFAP2B:1.26811036076;GATA4:1.25663396415;GTF2A1,2:1.23667851969;NR1H4:1.19971727229;NKX2-3_NKX2-5:1.19684641426;TLX2:1.19148512594;EGR1..3:1.18740722222;AR:1.16499251617;CDC5L:1.15885426144;ZNF423:1.14814143823;NANOG:1.102724901;MTF1:1.08809810104;TEAD1:1.0827407704;NKX2-1,4:1.07643584323;ZNF148:1.05457788563;NR3C1:1.02602104519;POU5F1:1.02315125256;GLI1..3:1.01750571477;TBX4,5:1.01535101169;MEF2{A,B,C,D}:0.979118720032;FOXM1:0.898384541259;FOX{I1,J2}:0.863745543426;BPTF:0.862516753192;SOX5:0.835227657119;FOXP1:0.817571328841;GFI1B:0.816475566008;POU3F1..4:0.800482083573;BREu{core}:0.783894064376;PAX1,9:0.778452730138;STAT1,3:0.753657593182;POU2F1..3:0.715175035238;RFX2..5_RFXANK_RFXAP:0.678125301967;NHLH1,2:0.668005521573;SNAI1..3:0.666736187373;POU6F1:0.652478700962;TEF:0.630920105518;HSF1,2:0.616181633554;IRF7:0.603749628904;ADNP_IRX_SIX_ZHX:0.58556188689;HOX{A6,A7,B6,B7}:0.578746948857;IKZF2:0.565389133842;RXRA_VDR{dimer}:0.563907864659;HAND1,2:0.559507693427;GZF1:0.542648782378;FOXN1:0.502390953392;TGIF1:0.484000613926;ZFP161:0.458904100421;ALX4:0.456260801489;ZEB1:0.454683447298;FOXL1:0.445481810129;ATF6:0.442143297693;DBP:0.442133411688;SOX2:0.438783351766;TP53:0.438055247062;FOXD3:0.412131472444;ETS1,2:0.383234016538;REST:0.365481302949;EBF1:0.333111864382;LMO2:0.285072211525;VSX1,2:0.282673278109;IRF1,2:0.277881639669;NKX6-1,2:0.239702783208;MAFB:0.23529657948;PITX1..3:0.22593785283;NR5A1,2:0.22415411019;RXR{A,B,G}:0.1635403803;HNF1A:0.136215248753;SPIB:0.130552496904;GFI1:0.125026577515;POU1F1:0.122944798064;NKX3-2:0.0980797644744;STAT2,4,6:0.0820950859654;RFX1:0.0622102722891;ATF2:0.0435852807468;HOX{A4,D4}:0.0401369975699;ALX1:0.0229090773248;SREBF1,2:0.0183122457425;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.00379342179742;UFEwm:-0.00571726424107;CDX1,2,4:-0.0469839426088;FOXQ1:-0.049721280653;PRRX1,2:-0.0592084510019;PAX6:-0.0740725930546;TOPORS:-0.091335341039;ATF4:-0.100509576871;SPI1:-0.116863749423;GATA6:-0.12017256239;ZBTB6:-0.120858799369;PBX1:-0.125873531867;CRX:-0.144929155467;NR6A1:-0.148470871281;ELF1,2,4:-0.15762856181;AHR_ARNT_ARNT2:-0.158113904972;ARID5B:-0.164426393237;ZNF143:-0.169323041345;NFIL3:-0.172336390214;ESRRA:-0.197021208519;HNF4A_NR2F1,2:-0.203567201077;JUN:-0.203684155018;SOX{8,9,10}:-0.229287671114;CUX2:-0.248274958403;LHX3,4:-0.330683785941;NFIX:-0.332947477311;AIRE:-0.335104656767;RUNX1..3:-0.342437679978;SOX17:-0.347001381421;FOS_FOS{B,L1}_JUN{B,D}:-0.356416000848;LEF1_TCF7_TCF7L1,2:-0.36843540368;CEBPA,B_DDIT3:-0.387439622238;FOSL2:-0.39205931299;PAX3,7:-0.392962956347;PDX1:-0.425367502023;FOXA2:-0.429863892409;HLF:-0.439011740808;NRF1:-0.445260206341;CREB1:-0.458354736344;NFKB1_REL_RELA:-0.474565989917;FOX{F1,F2,J1}:-0.508528183042;TFDP1:-0.519999109166;NFE2:-0.524596985268;HES1:-0.54353157358;E2F1..5:-0.545211692512;BACH2:-0.571318134141;FOXP3:-0.58236260042;RORA:-0.582821901417;MYOD1:-0.612343329394;NKX2-2,8:-0.688132881863;NFY{A,B,C}:-0.699054181113;ZBTB16:-0.709909780609;DMAP1_NCOR{1,2}_SMARC:-0.711539698724;PAX4:-0.746353490309;EVI1:-0.761273140894;PPARG:-0.770576967901;YY1:-0.795844346768;ATF5_CREB3:-0.800389556074;NFE2L2:-0.818516053879;HMGA1,2:-0.833907930821;ONECUT1,2:-0.915967365748;NANOG{mouse}:-0.92514125898;bHLH_family:-0.949045969618;PAX2:-0.98496987309;OCT4_SOX2{dimer}:-1.0257076622;EN1,2:-1.04611939704;HOX{A5,B5}:-1.06681190245;NFE2L1:-1.11950628543;HIF1A:-1.26170384115;ELK1,4_GABP{A,B1}:-1.37849715045;NKX3-1:-1.41460366009;MYB:-1.42430972978;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.53655093804;PAX8:-1.95044913739;STAT5{A,B}:-2.0703098399;HOXA9_MEIS1:-2.2025838615 | |top_motifs=TFAP2{A,C}:2.78841791972;HBP1_HMGB_SSRP1_UBTF:2.66418199955;TBP:2.59701902244;MYBL2:2.56406023213;MZF1:2.44824711218;MAZ:2.37605828308;SRF:2.32687504132;PRDM1:2.0414836141;RBPJ:1.9928431499;GTF2I:1.96508492723;NFATC1..3:1.96456406655;MYFfamily:1.96328329408;PATZ1:1.94656173308;RREB1:1.9301016147;T:1.92369965392;SP1:1.89683222458;SMAD1..7,9:1.87849452569;SPZ1:1.8580446519;ZNF238:1.80054918696;TFCP2:1.78166297792;TFAP4:1.77962060421;MED-1{core}:1.62538099308;FOX{D1,D2}:1.60862112423;HMX1:1.58635573867;TLX1..3_NFIC{dimer}:1.57951442735;IKZF1:1.55299649151;FOXO1,3,4:1.52068051217;XCPE1{core}:1.51087171808;GCM1,2:1.47423587098;ESR1:1.43125832553;ZNF384:1.42820423251;PAX5:1.41840292539;MTE{core}:1.36168130102;EP300:1.34604240096;ZIC1..3:1.32620001478;HIC1:1.31541993312;XBP1:1.31185547712;TAL1_TCF{3,4,12}:1.29909101468;KLF4:1.27090424711;TFAP2B:1.26811036076;GATA4:1.25663396415;GTF2A1,2:1.23667851969;NR1H4:1.19971727229;NKX2-3_NKX2-5:1.19684641426;TLX2:1.19148512594;EGR1..3:1.18740722222;AR:1.16499251617;CDC5L:1.15885426144;ZNF423:1.14814143823;NANOG:1.102724901;MTF1:1.08809810104;TEAD1:1.0827407704;NKX2-1,4:1.07643584323;ZNF148:1.05457788563;NR3C1:1.02602104519;POU5F1:1.02315125256;GLI1..3:1.01750571477;TBX4,5:1.01535101169;MEF2{A,B,C,D}:0.979118720032;FOXM1:0.898384541259;FOX{I1,J2}:0.863745543426;BPTF:0.862516753192;SOX5:0.835227657119;FOXP1:0.817571328841;GFI1B:0.816475566008;POU3F1..4:0.800482083573;BREu{core}:0.783894064376;PAX1,9:0.778452730138;STAT1,3:0.753657593182;POU2F1..3:0.715175035238;RFX2..5_RFXANK_RFXAP:0.678125301967;NHLH1,2:0.668005521573;SNAI1..3:0.666736187373;POU6F1:0.652478700962;TEF:0.630920105518;HSF1,2:0.616181633554;IRF7:0.603749628904;ADNP_IRX_SIX_ZHX:0.58556188689;HOX{A6,A7,B6,B7}:0.578746948857;IKZF2:0.565389133842;RXRA_VDR{dimer}:0.563907864659;HAND1,2:0.559507693427;GZF1:0.542648782378;FOXN1:0.502390953392;TGIF1:0.484000613926;ZFP161:0.458904100421;ALX4:0.456260801489;ZEB1:0.454683447298;FOXL1:0.445481810129;ATF6:0.442143297693;DBP:0.442133411688;SOX2:0.438783351766;TP53:0.438055247062;FOXD3:0.412131472444;ETS1,2:0.383234016538;REST:0.365481302949;EBF1:0.333111864382;LMO2:0.285072211525;VSX1,2:0.282673278109;IRF1,2:0.277881639669;NKX6-1,2:0.239702783208;MAFB:0.23529657948;PITX1..3:0.22593785283;NR5A1,2:0.22415411019;RXR{A,B,G}:0.1635403803;HNF1A:0.136215248753;SPIB:0.130552496904;GFI1:0.125026577515;POU1F1:0.122944798064;NKX3-2:0.0980797644744;STAT2,4,6:0.0820950859654;RFX1:0.0622102722891;ATF2:0.0435852807468;HOX{A4,D4}:0.0401369975699;ALX1:0.0229090773248;SREBF1,2:0.0183122457425;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.00379342179742;UFEwm:-0.00571726424107;CDX1,2,4:-0.0469839426088;FOXQ1:-0.049721280653;PRRX1,2:-0.0592084510019;PAX6:-0.0740725930546;TOPORS:-0.091335341039;ATF4:-0.100509576871;SPI1:-0.116863749423;GATA6:-0.12017256239;ZBTB6:-0.120858799369;PBX1:-0.125873531867;CRX:-0.144929155467;NR6A1:-0.148470871281;ELF1,2,4:-0.15762856181;AHR_ARNT_ARNT2:-0.158113904972;ARID5B:-0.164426393237;ZNF143:-0.169323041345;NFIL3:-0.172336390214;ESRRA:-0.197021208519;HNF4A_NR2F1,2:-0.203567201077;JUN:-0.203684155018;SOX{8,9,10}:-0.229287671114;CUX2:-0.248274958403;LHX3,4:-0.330683785941;NFIX:-0.332947477311;AIRE:-0.335104656767;RUNX1..3:-0.342437679978;SOX17:-0.347001381421;FOS_FOS{B,L1}_JUN{B,D}:-0.356416000848;LEF1_TCF7_TCF7L1,2:-0.36843540368;CEBPA,B_DDIT3:-0.387439622238;FOSL2:-0.39205931299;PAX3,7:-0.392962956347;PDX1:-0.425367502023;FOXA2:-0.429863892409;HLF:-0.439011740808;NRF1:-0.445260206341;CREB1:-0.458354736344;NFKB1_REL_RELA:-0.474565989917;FOX{F1,F2,J1}:-0.508528183042;TFDP1:-0.519999109166;NFE2:-0.524596985268;HES1:-0.54353157358;E2F1..5:-0.545211692512;BACH2:-0.571318134141;FOXP3:-0.58236260042;RORA:-0.582821901417;MYOD1:-0.612343329394;NKX2-2,8:-0.688132881863;NFY{A,B,C}:-0.699054181113;ZBTB16:-0.709909780609;DMAP1_NCOR{1,2}_SMARC:-0.711539698724;PAX4:-0.746353490309;EVI1:-0.761273140894;PPARG:-0.770576967901;YY1:-0.795844346768;ATF5_CREB3:-0.800389556074;NFE2L2:-0.818516053879;HMGA1,2:-0.833907930821;ONECUT1,2:-0.915967365748;NANOG{mouse}:-0.92514125898;bHLH_family:-0.949045969618;PAX2:-0.98496987309;OCT4_SOX2{dimer}:-1.0257076622;EN1,2:-1.04611939704;HOX{A5,B5}:-1.06681190245;NFE2L1:-1.11950628543;HIF1A:-1.26170384115;ELK1,4_GABP{A,B1}:-1.37849715045;NKX3-1:-1.41460366009;MYB:-1.42430972978;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.53655093804;PAX8:-1.95044913739;STAT5{A,B}:-2.0703098399;HOXA9_MEIS1:-2.2025838615 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10013-101C4;search_select_hide=table117:FF:10013-101C4 | |||
}} | }} | ||
Latest revision as of 12:13, 3 June 2020
| Name: | cervix, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10618 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10618
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10618
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0123 |
| 10 | 10 | 0.0322 |
| 100 | 100 | 0.0886 |
| 101 | 101 | 0.916 |
| 102 | 102 | 0.382 |
| 103 | 103 | 0.108 |
| 104 | 104 | 0.595 |
| 105 | 105 | 0.804 |
| 106 | 106 | 0.633 |
| 107 | 107 | 0.36 |
| 108 | 108 | 0.979 |
| 109 | 109 | 0.0121 |
| 11 | 11 | 0.0494 |
| 110 | 110 | 0.171 |
| 111 | 111 | 0.00282 |
| 112 | 112 | 0.944 |
| 113 | 113 | 0.143 |
| 114 | 114 | 0.00295 |
| 115 | 115 | 0.436 |
| 116 | 116 | 0.74 |
| 117 | 117 | 0.0189 |
| 118 | 118 | 0.0495 |
| 119 | 119 | 0.291 |
| 12 | 12 | 0.482 |
| 120 | 120 | 0.0828 |
| 121 | 121 | 0.733 |
| 122 | 122 | 0.89 |
| 123 | 123 | 0.0611 |
| 124 | 124 | 0.766 |
| 125 | 125 | 0.178 |
| 126 | 126 | 0.768 |
| 127 | 127 | 0.226 |
| 128 | 128 | 0.949 |
| 129 | 129 | 0.349 |
| 13 | 13 | 0.0532 |
| 130 | 130 | 0.664 |
| 131 | 131 | 0.289 |
| 132 | 132 | 0.0685 |
| 133 | 133 | 0.0049 |
| 134 | 134 | 0.11 |
| 135 | 135 | 0.352 |
| 136 | 136 | 0.347 |
| 137 | 137 | 0.336 |
| 138 | 138 | 0.558 |
| 139 | 139 | 0.311 |
| 14 | 14 | 0.823 |
| 140 | 140 | 0.212 |
| 141 | 141 | 0.765 |
| 142 | 142 | 0.678 |
| 143 | 143 | 0.00809 |
| 144 | 144 | 0.781 |
| 145 | 145 | 0.56 |
| 146 | 146 | 0.92 |
| 147 | 147 | 0.751 |
| 148 | 148 | 0.191 |
| 149 | 149 | 0.302 |
| 15 | 15 | 0.0335 |
| 150 | 150 | 0.383 |
| 151 | 151 | 0.652 |
| 152 | 152 | 0.705 |
| 153 | 153 | 0.338 |
| 154 | 154 | 0.885 |
| 155 | 155 | 0.351 |
| 156 | 156 | 0.949 |
| 157 | 157 | 0.494 |
| 158 | 158 | 0.435 |
| 159 | 159 | 0.423 |
| 16 | 16 | 0.233 |
| 160 | 160 | 0.69 |
| 161 | 161 | 0.425 |
| 162 | 162 | 0.167 |
| 163 | 163 | 0.415 |
| 164 | 164 | 0.0536 |
| 165 | 165 | 0.875 |
| 166 | 166 | 0.242 |
| 167 | 167 | 0.0268 |
| 168 | 168 | 0.603 |
| 169 | 169 | 0.489 |
| 17 | 17 | 0.461 |
| 18 | 18 | 0.0245 |
| 19 | 19 | 0.6 |
| 2 | 2 | 0.149 |
| 20 | 20 | 0.137 |
| 21 | 21 | 0.335 |
| 22 | 22 | 0.977 |
| 23 | 23 | 0.74 |
| 24 | 24 | 0.481 |
| 25 | 25 | 0.304 |
| 26 | 26 | 0.0245 |
| 27 | 27 | 0.98 |
| 28 | 28 | 0.704 |
| 29 | 29 | 0.00863 |
| 3 | 3 | 0.199 |
| 30 | 30 | 0.0439 |
| 31 | 31 | 0.966 |
| 32 | 32 | 0.63 |
| 33 | 33 | 0.138 |
| 34 | 34 | 0.461 |
| 35 | 35 | 0.246 |
| 36 | 36 | 0.0134 |
| 37 | 37 | 0.136 |
| 38 | 38 | 0.486 |
| 39 | 39 | 0.373 |
| 4 | 4 | 0.216 |
| 40 | 40 | 0.0297 |
| 41 | 41 | 0.0452 |
| 42 | 42 | 0.296 |
| 43 | 43 | 0.182 |
| 44 | 44 | 0.354 |
| 45 | 45 | 0.236 |
| 46 | 46 | 0.0935 |
| 47 | 47 | 0.0598 |
| 48 | 48 | 0.181 |
| 49 | 49 | 0.0897 |
| 5 | 5 | 0.511 |
| 50 | 50 | 0.629 |
| 51 | 51 | 0.685 |
| 52 | 52 | 0.356 |
| 53 | 53 | 0.817 |
| 54 | 54 | 0.919 |
| 55 | 55 | 0.932 |
| 56 | 56 | 0.681 |
| 57 | 57 | 0.139 |
| 58 | 58 | 0.565 |
| 59 | 59 | 0.906 |
| 6 | 6 | 0.72 |
| 60 | 60 | 0.86 |
| 61 | 61 | 0.373 |
| 62 | 62 | 0.308 |
| 63 | 63 | 0.521 |
| 64 | 64 | 0.2 |
| 65 | 65 | 0.566 |
| 66 | 66 | 0.0282 |
| 67 | 67 | 0.525 |
| 68 | 68 | 0.75 |
| 69 | 69 | 0.421 |
| 7 | 7 | 0.216 |
| 70 | 70 | 0.0343 |
| 71 | 71 | 0.0366 |
| 72 | 72 | 0.729 |
| 73 | 73 | 0.0593 |
| 74 | 74 | 0.229 |
| 75 | 75 | 0.00913 |
| 76 | 76 | 0.0371 |
| 77 | 77 | 0.41 |
| 78 | 78 | 0.128 |
| 79 | 79 | 0.824 |
| 8 | 8 | 0.178 |
| 80 | 80 | 0.193 |
| 81 | 81 | 0.541 |
| 82 | 82 | 0.854 |
| 83 | 83 | 0.526 |
| 84 | 84 | 0.899 |
| 85 | 85 | 0.765 |
| 86 | 86 | 0.647 |
| 87 | 87 | 0.0412 |
| 88 | 88 | 0.8 |
| 89 | 89 | 0.846 |
| 9 | 9 | 0.596 |
| 90 | 90 | 0.0772 |
| 91 | 91 | 0.712 |
| 92 | 92 | 0.991 |
| 93 | 93 | 0.057 |
| 94 | 94 | 0.0454 |
| 95 | 95 | 0.00543 |
| 96 | 96 | 0.193 |
| 97 | 97 | 0.781 |
| 98 | 98 | 0.102 |
| 99 | 99 | 0.268 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10618
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010013 human cervix - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000002 (uterine cervix)
0000995 (uterus)
0003134 (female reproductive organ)
0000479 (tissue)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010013 (human cervix - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)
