FFCP PHASE1:Mm9::chr12:47919736..47919775,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=664883 | |EntrezGene=664883 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=87 | |||
|TSSclassifier=NA | |||
|UniProt=Q9JKN6 | |UniProt=Q9JKN6 | ||
|association_with_transcript=0bp_to_ENSMUST00000021438,NM_021361,uc007nmd.2,uc007nme.2_5end | |association_with_transcript=0bp_to_ENSMUST00000021438,NM_021361,uc007nmd.2,uc007nme.2_5end | ||
|cluster_id=chr12:47919736..47919775,- | |||
|description=CAGE_peak_3_at_Nova1_5end | |description=CAGE_peak_3_at_Nova1_5end | ||
|id=chr12:47919736..47919775,- | |id=chr12:47919736..47919775,- | ||
|ontology_enrichment_celltype=CL:0000540!4.54e-13!33;CL:0000047!4.54e-13!33;CL:0000031!4.54e-13!33;CL:0000404!4.54e-13!33;CL:0000117!4.94e-13!23;CL:0000337!4.94e-13!23;CL:0002319!8.84e-12!43;CL:0000221!9.37e-12!44;CL:0000133!9.37e-12!44;CL:0000393!1.63e-08!39;CL:0000211!1.63e-08!39;CL:0000055!1.32e-07!50 | |ontology_enrichment_celltype=CL:0000540!4.54e-13!33;CL:0000047!4.54e-13!33;CL:0000031!4.54e-13!33;CL:0000404!4.54e-13!33;CL:0000117!4.94e-13!23;CL:0000337!4.94e-13!23;CL:0002319!8.84e-12!43;CL:0000221!9.37e-12!44;CL:0000133!9.37e-12!44;CL:0000393!1.63e-08!39;CL:0000211!1.63e-08!39;CL:0000055!1.32e-07!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.88e-15,23;CL:0000337,2.88e-15,23;CL:0000540,1.84e-12,33;CL:0000047,1.84e-12,33;CL:0000031,1.84e-12,33;CL:0000404,1.84e-12,33;CL:0000393,4.02e-09,39;CL:0000211,4.02e-09,39;CL:0002319,6.19e-09,43;CL:0000221,1.60e-08,44;CL:0000133,1.60e-08,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.96e-28!102;UBERON:0000924!3.96e-28!102;UBERON:0006601!3.96e-28!102;UBERON:0001017!8.53e-28!73;UBERON:0005743!8.53e-28!73;UBERON:0000073!6.43e-27!75;UBERON:0001016!6.43e-27!75;UBERON:0002346!8.34e-23!71;UBERON:0003075!8.34e-23!71;UBERON:0007284!8.34e-23!71;UBERON:0001049!1.07e-21!52;UBERON:0005068!1.07e-21!52;UBERON:0006241!1.07e-21!52;UBERON:0007135!1.07e-21!52;UBERON:0000033!1.42e-21!63;UBERON:0000955!7.67e-20!50;UBERON:0006238!7.67e-20!50;UBERON:0002616!2.64e-19!49;UBERON:0003056!1.07e-18!49;UBERON:0002020!6.10e-18!34;UBERON:0003080!2.79e-16!40;UBERON:0002780!1.34e-15!39;UBERON:0001890!1.34e-15!39;UBERON:0006240!1.34e-15!39;UBERON:0002791!2.01e-14!29;UBERON:0003528!2.01e-14!29;UBERON:0001893!2.01e-14!29;UBERON:0000153!9.19e-10!94;UBERON:0000956!2.44e-09!21;UBERON:0001869!2.44e-09!21;UBERON:0000203!2.44e-09!21;UBERON:0007811!3.59e-09!86;UBERON:0002619!7.45e-09!17;UBERON:0000468!3.64e-07!333;UBERON:0002021!3.72e-07!10;UBERON:0000411!3.72e-07!10;UBERON:0001950!3.72e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.35e-27,95;UBERON:0000924,1.35e-27,95;UBERON:0006601,1.35e-27,95;UBERON:0001017,2.63e-25,73;UBERON:0001016,4.61e-24,75;UBERON:0002346,5.49e-24,64;UBERON:0003075,5.49e-24,64;UBERON:0007284,5.49e-24,64;UBERON:0010371,1.76e-23,73;UBERON:0000073,4.75e-23,54;UBERON:0001049,1.67e-21,52;UBERON:0005068,1.67e-21,52;UBERON:0006241,1.67e-21,52;UBERON:0007135,1.67e-21,52;UBERON:0002020,6.67e-20,34;UBERON:0003056,4.71e-18,49;UBERON:0000955,5.20e-17,47;UBERON:0006238,5.20e-17,47;UBERON:0002616,2.33e-16,46;UBERON:0003528,2.48e-15,29;UBERON:0002791,2.48e-15,29;UBERON:0001893,2.48e-15,29;UBERON:0003080,8.90e-15,40;UBERON:0002780,5.90e-14,39;UBERON:0001890,5.90e-14,39;UBERON:0006240,5.90e-14,39;UBERON:0010314,2.85e-12,92;UBERON:0002619,1.48e-09,17;UBERON:0002021,3.54e-09,10;UBERON:0000411,3.54e-09,10;UBERON:0001950,3.54e-09,10;UBERON:0000956,7.39e-09,21;UBERON:0001869,7.39e-09,21;UBERON:0000203,7.39e-09,21;UBERON:0002420,2.29e-08,8;UBERON:0007245,2.29e-08,8;UBERON:0010009,2.29e-08,8;UBERON:0010011,2.29e-08,8;UBERON:0000454,2.29e-08,8;UBERON:0003076,1.41e-07,12;UBERON:0003057,1.41e-07,12;UBERON:0002240,7.12e-07,6;UBERON:0005174,7.12e-07,6;UBERON:0001137,7.12e-07,6 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19060606211498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0.878744730937887,0.972149495371417,0.839918529752175,2.87505128729943,0,0,0,0,0,0,30.5497855897993,33.8554226734101,29.7900759647904,0,0.889294796111139,0,0,0,0.299600110518405,2.30530983192933,0.622137673850866,1.08004750665353,0.841299845405528,11.9973413449598,11.2642955885323,3.06226998037385,3.64212789869298,1.83843757322004,5.50579404996943,7.2781782708557,10.9060638611933,23.3438729282443,23.6038120494217,19.2737947106001,9.49222196604695,9.56696437053856,5.95913166329559,18.2669722993674,14.5219114415085,20.5039390407831,0.151452386666368,0.151143120213571,0,0,0,0,0,0,0.280888840263504,0,0,0,0.563373679106722,0,0,0,0,0,0.505524445014783,0.45673551887624,0.517875767294343,0.593768556259299,0.173485326766136,0,0.230615497256059,0.452167921657868,1.29347577849275,0.376999773989026,0,0.86759614151947,0,0.970601099684455,0.220841518460394,0.484875253135222,0,7.90508151931177,4.60782754989601,0,0,0,0,12.5824137100051,11.8950156732843,10.178002521142,10.6032835317289,7.16003280524926,10.8049783170971,8.27430441645564,1.2220723662038,1.36847667671102,0,1.05220927943237,2.21204753036596,2.75882525320168,2.88099407688559,1.80845781402858,3.19771546011241,2.3060469651273,1.78033276663485,2.84573707812917,0.431135985865684,0.756424320671277,0.879755620819744,0.219195732427575,2.78047249225598,0.348252166522167,1.4404749548556,0.59710280045548,0,0,0,0,0,0.180062061461015,0.23674473558521,0,0.308534225774757,0,0.268273401399619,0,0.329119699826961,0,0.405344047729279,0.146199987425332,0.878200461164203,0.134206418760372,3.99550902271842,4.83651678182637,0,0,0,1.39342003116263,0.38660238396628,0.201683524623343,0,0,0,0.164698954724011,0.251335208800269,0.397912944082302,0.19496408711912,0,0,0.199141273254367,0.189667900953082,0.456994050438915,0,0.203651327845314,0.193952487167626,0.140271639780637,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.482443521363367,0.369506380333209,0.189491411770485,0.162964976442026,0.169745085775188,0.469380496577004,0,0,0.390267295715598,0.315270288212382,0.664394068946325,0.318909537314974,0.81931657357869,0.345369963731791,0.433947175744535,0,0,0,1.37968373152366,9.47248480927973,10.7834751664827,0,3.02965112645248,0.631016438832513,1.95219372148319,0.861693590931196,1.19484398976276,0.445597348164788,3.11384183867716,2.42886421004937,1.16902343164525,0.395287777946524,4.81981974632711,0.567760340833074,0.178065603667255,0.81443479676788,1.64970122972535,0,0.242780636154981,0,0.377210159511796,0,0.307435147943927,1.03371317267288,0.727067458955011,1.42598951353889,1.26414703174326,0,0,2.04263763452273,2.52085531643834,0.388076051348264,0.857348140126369,0.709360934569094,0.535106452806212,1.31639216481697,0.608929898229199,0.23467170806371,0,0,2.96795255294664,3.55221738730992,1.68876189798836,0.477489376012546,1.64140899745061,0,8.90041449650446,0,0.619160603889667,0.185194527369712,0,0,0,0,0,0,0,0.632671987162271,0.406638934253697,0.108005340821801,0.209088296014469,0.436725127492355,0.809186078308924,0.41326727862668,0.523511883968059,0.129614973291793,0,0,0.747582730219894,0.496375471371293,0.388902376688095,0.516639293910924,0.337912250981556,0.704143431874524,0,0.524296722128554,0.241584120826006,0,0,0.405450430580328,0.102710957164827,0,0.179026695667481,0,0.120195449519969,0,0,0,0,0,0,0,1.58711268530648,0,0.0897138566094757,0,0.19318959403219,0.375364950902364,1.64836461840539,1.07184189539533,0,11.8597886949584,8.74617949363636,5.72895513439397,5.84300819968538,7.53590771747707,6.7985450765073,6.75022500231806,13.5096360967266,8.60970577069989,12.4262474820437,3.73634451303036,6.78342284781753,3.58540572083682,3.16038732188782,3.14419743941973,2.94149613520023,3.11145418922261,3.5025959730612,4.49286893428541,3.28506375292937,3.04175159868288,2.64076877940507,2.71560371662659,3.07320731543373,2.52716063404698,3.81034953026459,2.31768651889711,3.08654752741928,0.824171801606613,3.23837624295674,3.08582327146874,2.66213709239006,3.09967046931517,2.76158191601424,2.82328141245992,3.46919892355874,2.19513567447327,3.41990624869196,3.12349461845482,3.36685362994643,2.60997039873183,2.06859412988683,2.04615521584845,4.02835787083512,2.12197272079256,5.9954538705107,3.04111090979031,2.36358159453128,2.86932498103265,1.54413993383661,1.39120701372253 | |phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19060606211498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0.878744730937887,0.972149495371417,0.839918529752175,2.87505128729943,0,0,0,0,0,0,30.5497855897993,33.8554226734101,29.7900759647904,0,0.889294796111139,0,0,0,0.299600110518405,2.30530983192933,0.622137673850866,1.08004750665353,0.841299845405528,11.9973413449598,11.2642955885323,3.06226998037385,3.64212789869298,1.83843757322004,5.50579404996943,7.2781782708557,10.9060638611933,23.3438729282443,23.6038120494217,19.2737947106001,9.49222196604695,9.56696437053856,5.95913166329559,18.2669722993674,14.5219114415085,20.5039390407831,0.151452386666368,0.151143120213571,0,0,0,0,0,0,0.280888840263504,0,0,0,0.563373679106722,0,0,0,0,0,0.505524445014783,0.45673551887624,0.517875767294343,0.593768556259299,0.173485326766136,0,0.230615497256059,0.452167921657868,1.29347577849275,0.376999773989026,0,0.86759614151947,0,0.970601099684455,0.220841518460394,0.484875253135222,0,7.90508151931177,4.60782754989601,0,0,0,0,12.5824137100051,11.8950156732843,10.178002521142,10.6032835317289,7.16003280524926,10.8049783170971,8.27430441645564,1.2220723662038,1.36847667671102,0,1.05220927943237,2.21204753036596,2.75882525320168,2.88099407688559,1.80845781402858,3.19771546011241,2.3060469651273,1.78033276663485,2.84573707812917,0.431135985865684,0.756424320671277,0.879755620819744,0.219195732427575,2.78047249225598,0.348252166522167,1.4404749548556,0.59710280045548,0,0,0,0,0,0.180062061461015,0.23674473558521,0,0.308534225774757,0,0.268273401399619,0,0.329119699826961,0,0.405344047729279,0.146199987425332,0.878200461164203,0.134206418760372,3.99550902271842,4.83651678182637,0,0,0,1.39342003116263,0.38660238396628,0.201683524623343,0,0,0,0.164698954724011,0.251335208800269,0.397912944082302,0.19496408711912,0,0,0.199141273254367,0.189667900953082,0.456994050438915,0,0.203651327845314,0.193952487167626,0.140271639780637,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.482443521363367,0.369506380333209,0.189491411770485,0.162964976442026,0.169745085775188,0.469380496577004,0,0,0.390267295715598,0.315270288212382,0.664394068946325,0.318909537314974,0.81931657357869,0.345369963731791,0.433947175744535,0,0,0,1.37968373152366,9.47248480927973,10.7834751664827,0,3.02965112645248,0.631016438832513,1.95219372148319,0.861693590931196,1.19484398976276,0.445597348164788,3.11384183867716,2.42886421004937,1.16902343164525,0.395287777946524,4.81981974632711,0.567760340833074,0.178065603667255,0.81443479676788,1.64970122972535,0,0.242780636154981,0,0.377210159511796,0,0.307435147943927,1.03371317267288,0.727067458955011,1.42598951353889,1.26414703174326,0,0,2.04263763452273,2.52085531643834,0.388076051348264,0.857348140126369,0.709360934569094,0.535106452806212,1.31639216481697,0.608929898229199,0.23467170806371,0,0,2.96795255294664,3.55221738730992,1.68876189798836,0.477489376012546,1.64140899745061,0,8.90041449650446,0,0.619160603889667,0.185194527369712,0,0,0,0,0,0,0,0.632671987162271,0.406638934253697,0.108005340821801,0.209088296014469,0.436725127492355,0.809186078308924,0.41326727862668,0.523511883968059,0.129614973291793,0,0,0.747582730219894,0.496375471371293,0.388902376688095,0.516639293910924,0.337912250981556,0.704143431874524,0,0.524296722128554,0.241584120826006,0,0,0.405450430580328,0.102710957164827,0,0.179026695667481,0,0.120195449519969,0,0,0,0,0,0,0,1.58711268530648,0,0.0897138566094757,0,0.19318959403219,0.375364950902364,1.64836461840539,1.07184189539533,0,11.8597886949584,8.74617949363636,5.72895513439397,5.84300819968538,7.53590771747707,6.7985450765073,6.75022500231806,13.5096360967266,8.60970577069989,12.4262474820437,3.73634451303036,6.78342284781753,3.58540572083682,3.16038732188782,3.14419743941973,2.94149613520023,3.11145418922261,3.5025959730612,4.49286893428541,3.28506375292937,3.04175159868288,2.64076877940507,2.71560371662659,3.07320731543373,2.52716063404698,3.81034953026459,2.31768651889711,3.08654752741928,0.824171801606613,3.23837624295674,3.08582327146874,2.66213709239006,3.09967046931517,2.76158191601424,2.82328141245992,3.46919892355874,2.19513567447327,3.41990624869196,3.12349461845482,3.36685362994643,2.60997039873183,2.06859412988683,2.04615521584845,4.02835787083512,2.12197272079256,5.9954538705107,3.04111090979031,2.36358159453128,2.86932498103265,1.54413993383661,1.39120701372253 | ||
|short_description=p3@Nova1 | |short_description=p3@Nova1 | ||
}} | }} |
Latest revision as of 15:23, 26 September 2015
Short description: | p3@Nova1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Nova1_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | 0bp_to_ENSMUST00000021438, NM_021361, uc007nmd.2, uc007nme.2_5end |
EntrezGene: | Nova1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.88e-15 | 23 |
neuroblast (sensu Vertebrata) | 2.88e-15 | 23 |
neuron | 1.84e-12 | 33 |
neuronal stem cell | 1.84e-12 | 33 |
neuroblast | 1.84e-12 | 33 |
electrically signaling cell | 1.84e-12 | 33 |
electrically responsive cell | 4.02e-09 | 39 |
electrically active cell | 4.02e-09 | 39 |
neural cell | 6.19e-09 | 43 |
ectodermal cell | 1.60e-08 | 44 |
neurectodermal cell | 1.60e-08 | 44 |